Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 108.68339 * 2 1 4 4 C 1.45825 * 108.72229 * 241.81587 * 2 1 3 5 5 S 1.82215 * 112.65671 * 173.89281 * 4 2 1 6 6 C 1.79945 * 103.24155 * 73.95563 * 5 4 2 7 7 C 1.53829 * 111.13613 * 276.00379 * 6 5 4 8 8 N 1.46396 * 114.95155 * 43.04806 * 7 6 5 9 9 C 1.34780 * 119.72370 * 222.54391 * 8 7 6 10 10 O 1.21349 * 119.99819 * 174.94366 * 9 8 7 11 11 C 1.49449 * 119.99784 * 354.94646 * 9 8 7 12 12 O 1.21348 * 120.00521 * 85.48763 * 11 9 8 13 13 N 1.34785 * 119.99746 * 265.47901 * 11 9 8 14 14 C 1.46924 * 120.62828 * 4.78691 * 13 11 9 15 15 C 1.53623 * 108.54089 * 126.36803 * 14 13 11 16 16 C 1.53040 * 109.24414 * 54.85666 * 15 14 13 17 17 C 1.53044 * 109.53438 * 298.50874 * 16 15 14 18 18 H 1.08999 * 109.50272 * 301.41390 * 17 16 15 19 19 C 1.50706 * 109.52473 * 181.32996 * 17 16 15 20 20 H 1.08004 * 119.99590 * 0.14673 * 19 17 16 21 21 C 1.37872 * 119.99930 * 180.14780 * 19 17 16 22 22 N 1.31509 * 120.00500 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99671 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47211 * 59.99971 * 23 21 19 25 25 H 1.48505 * 109.46833 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46845 * 299.99824 * 23 21 19 27 27 C 1.46924 * 120.62844 * 185.06387 * 13 11 9 28 28 C 1.44679 * 120.54872 * 42.52100 * 8 7 6 29 29 H 1.09000 * 109.47159 * 178.18300 * 1 2 3 30 30 H 1.09003 * 109.47243 * 298.18353 * 1 2 3 31 31 H 1.08998 * 109.47240 * 58.18670 * 1 2 3 32 32 H 1.09003 * 108.84310 * 294.71503 * 4 2 1 33 33 H 1.09004 * 108.84323 * 53.17432 * 4 2 1 34 34 H 1.09005 * 109.14989 * 36.42770 * 6 5 4 35 35 H 1.08994 * 109.14750 * 155.57755 * 6 5 4 36 36 H 1.09002 * 108.38353 * 164.46519 * 7 6 5 37 37 H 1.08999 * 108.38335 * 281.63031 * 7 6 5 38 38 H 1.09001 * 109.58583 * 246.19673 * 14 13 11 39 39 H 1.08998 * 109.58654 * 6.63072 * 14 13 11 40 40 H 1.09006 * 109.63549 * 294.86437 * 15 14 13 41 41 H 1.09001 * 109.45814 * 174.73886 * 15 14 13 42 42 H 1.08994 * 109.46202 * 178.49474 * 16 15 14 43 43 H 1.09000 * 109.44763 * 58.52177 * 16 15 14 44 44 H 0.97004 * 120.00393 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.58834 * 353.38200 * 27 13 11 46 46 H 1.09008 * 109.58018 * 113.65805 * 27 13 11 47 47 H 1.09001 * 109.47123 * 141.51429 * 28 8 7 48 48 H 1.08992 * 109.47492 * 21.49500 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8791 1.0326 0.0000 4 6 1.9980 -0.6523 -1.2173 5 16 3.8068 -0.5551 -1.4147 6 6 4.4178 -1.7359 -0.2021 7 6 4.5166 -1.0967 1.1936 8 7 3.3769 -0.2591 1.5714 9 6 3.5897 0.9199 2.1888 10 8 2.6566 1.6598 2.4217 11 6 4.9748 1.3158 2.5865 12 8 5.7012 1.8685 1.7868 13 7 5.4172 1.0591 3.8335 14 6 4.5894 0.2989 4.7798 15 6 5.4171 -0.8790 5.3159 16 6 6.7237 -0.3483 5.9102 17 6 7.5352 0.3524 4.8180 18 1 7.7393 -0.3495 4.0095 19 6 8.8364 0.8464 5.3959 20 1 9.0639 0.6756 6.4378 21 6 9.7364 1.5163 4.5945 22 7 9.4592 1.7247 3.3260 23 14 11.3496 2.1279 5.3108 24 1 12.1257 0.9765 5.8371 25 1 12.1341 2.8114 4.2511 26 1 11.0711 3.0828 6.4136 27 6 6.7339 1.5395 4.2744 28 6 2.0242 -0.6862 1.2870 29 1 -0.3633 -1.0271 -0.0326 30 1 -0.3634 0.4854 0.9058 31 1 -0.3633 0.5417 -0.8733 32 1 1.7025 -1.7012 -1.1907 33 1 1.5254 -0.1757 -2.0762 34 1 3.7384 -2.5872 -0.1581 35 1 5.4050 -2.0830 -0.5070 36 1 4.6168 -1.8938 1.9304 37 1 5.4188 -0.4861 1.2290 38 1 4.2911 0.9451 5.6053 39 1 3.7032 -0.0779 4.2691 40 1 5.6412 -1.5694 4.5027 41 1 4.8507 -1.3988 6.0887 42 1 7.3019 -1.1785 6.3158 43 1 6.4985 0.3609 6.7067 44 1 10.0922 2.1963 2.7623 45 1 7.2629 1.9817 3.4302 46 1 6.6066 2.2868 5.0578 47 1 1.3743 -0.4117 2.1178 48 1 2.0053 -1.7677 1.1525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118456513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -89.967814 kcal Electronic energy + Delta-G solvation = -29481.615463 eV Core-core repulsion = 25661.671684 eV Total energy + Delta-G solvation = -3819.943779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.18134 -40.26777 -38.50880 -38.15859 -36.13137 -35.32242 -33.54027 -32.05549 -31.64080 -28.90722 -28.25530 -27.13436 -26.56008 -24.87292 -23.60562 -23.40711 -21.80830 -20.94968 -19.79698 -18.99822 -18.32074 -18.10616 -17.68058 -17.46457 -16.86764 -16.57015 -16.11146 -15.83123 -15.64835 -15.32310 -15.24938 -14.93139 -14.66534 -14.53998 -14.39138 -14.34848 -13.99063 -13.85550 -13.57700 -13.53303 -12.87422 -12.86223 -12.78788 -12.78027 -12.60646 -12.36090 -12.31465 -12.27600 -12.10378 -11.86025 -11.78010 -11.65711 -11.10190 -10.96566 -10.71516 -10.58115 -10.49907 -9.96093 -9.62792 -8.75476 -8.10610 -6.27097 0.69307 0.94802 1.09654 1.42375 1.43662 1.47709 1.51661 1.60904 2.30617 2.43477 3.08212 3.18883 3.44918 3.62382 3.78080 3.90024 3.91963 4.06638 4.13952 4.27205 4.33735 4.40592 4.42819 4.50446 4.51970 4.59400 4.62297 4.66753 4.74363 4.74592 4.77776 4.80930 5.05260 5.07590 5.17592 5.19043 5.23605 5.27780 5.31190 5.42445 5.44517 5.59352 5.82851 5.87114 5.95535 6.29670 6.33295 6.61114 6.82115 6.90151 7.43312 8.92306 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.003420 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.703281 B = 8184.177728 C = 8813.640946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 H 0.042 0.958 4 C -0.054 4.054 5 S -0.323 6.323 6 C -0.081 4.081 7 C 0.098 3.902 8 N -0.573 5.573 9 C 0.532 3.468 10 O -0.538 6.538 11 C 0.496 3.504 12 O -0.560 6.560 13 N -0.586 5.586 14 C 0.103 3.897 15 C -0.119 4.119 16 C -0.106 4.106 17 C 0.044 3.956 18 H -0.003 1.003 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.013 3.987 22 N -0.913 5.913 23 Si 0.954 3.046 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.270 1.270 27 C 0.122 3.878 28 C 0.110 3.890 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.259 0.741 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.358 -13.487 -3.764 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 H 0.061 0.939 4 C -0.202 4.202 5 S -0.094 6.094 6 C -0.229 4.229 7 C -0.027 4.027 8 N -0.305 5.305 9 C 0.315 3.685 10 O -0.414 6.414 11 C 0.279 3.721 12 O -0.438 6.438 13 N -0.319 5.319 14 C -0.019 4.019 15 C -0.157 4.157 16 C -0.144 4.144 17 C 0.024 3.976 18 H 0.015 0.985 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.187 4.187 22 N -0.552 5.552 23 Si 0.780 3.220 24 H -0.191 1.191 25 H -0.217 1.217 26 H -0.195 1.195 27 C 0.000 4.000 28 C -0.011 4.011 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.773 -12.136 -4.940 22.893 hybrid contribution 0.967 0.536 0.705 1.312 sum -17.806 -11.599 -4.234 21.668 Atomic orbital electron populations 1.21794 0.91301 1.03670 1.02512 1.20588 0.98571 0.99818 0.94388 0.93919 1.22304 0.90465 1.06056 1.01328 1.87419 1.10072 1.60791 1.51082 1.23720 1.07385 0.99104 0.92737 1.21958 0.87474 0.95606 0.97697 1.47404 1.08751 1.17981 1.56357 1.20015 0.88041 0.82005 0.78454 1.90733 1.42903 1.50858 1.56949 1.20684 0.87531 0.80550 0.83322 1.90815 1.56462 1.44660 1.51901 1.48598 1.19290 1.52425 1.11557 1.22115 0.93087 0.93977 0.92697 1.21960 0.96147 0.96192 1.01365 1.21535 0.95525 0.99536 0.97798 1.18873 0.92696 0.92182 0.93810 0.98453 1.21483 1.02472 1.36832 0.96587 0.91804 1.25845 1.01672 0.96170 0.95029 1.70052 1.36971 1.41813 1.06342 0.85673 0.79746 0.78736 0.77894 1.19138 1.21728 1.19470 1.21955 0.79915 0.98403 0.99688 1.21866 0.80635 1.01041 0.97575 0.89661 0.92530 0.91940 0.86715 0.87105 0.85385 0.85749 0.87307 0.93074 0.90137 0.89407 0.91795 0.87416 0.92104 0.92606 0.93160 0.90214 0.94160 0.89061 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.94 71.98 0.64 -0.96 16 2 C -0.11 -2.02 2.30 -12.66 -0.03 -2.05 16 3 H 0.04 1.19 7.51 -2.39 -0.02 1.17 16 4 C -0.05 -0.85 5.00 69.78 0.35 -0.50 16 5 S -0.32 -7.84 21.62 -56.49 -1.22 -9.07 16 6 C -0.08 -1.46 5.90 72.26 0.43 -1.04 16 7 C 0.10 2.29 5.85 86.68 0.51 2.80 16 8 N -0.57 -14.50 2.40 -824.59 -1.98 -16.48 16 9 C 0.53 18.82 5.15 87.27 0.45 19.27 16 10 O -0.54 -20.86 16.45 -3.24 -0.05 -20.91 16 11 C 0.50 21.63 5.64 87.27 0.49 22.12 16 12 O -0.56 -30.08 16.13 -3.24 -0.05 -30.14 16 13 N -0.59 -23.94 2.97 -819.64 -2.43 -26.37 16 14 C 0.10 3.04 6.35 86.51 0.55 3.59 16 15 C -0.12 -3.17 6.10 30.82 0.19 -2.99 16 16 C -0.11 -3.80 5.11 30.62 0.16 -3.64 16 17 C 0.04 2.09 2.25 -11.46 -0.03 2.07 16 18 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 19 C -0.54 -28.50 8.57 25.60 0.22 -28.28 16 20 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 21 C 0.01 0.69 5.30 84.65 0.45 1.14 16 22 N -0.91 -54.58 11.39 21.44 0.24 -54.34 16 23 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C 0.12 6.02 5.41 86.36 0.47 6.48 16 28 C 0.11 1.89 4.59 87.06 0.40 2.29 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.80 8.03 -2.39 -0.02 0.78 16 31 H 0.06 0.73 8.11 -2.39 -0.02 0.71 16 32 H 0.11 1.03 8.11 -2.39 -0.02 1.02 16 33 H 0.11 1.62 8.04 -2.39 -0.02 1.60 16 34 H 0.13 1.28 7.91 -2.47 -0.02 1.26 16 35 H 0.12 2.21 8.14 -2.47 -0.02 2.19 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.73 6.11 -2.39 -0.01 1.71 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.09 2.21 6.37 -2.39 -0.02 2.19 16 40 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.08 4.73 5.11 -2.39 -0.01 4.72 16 46 H 0.04 1.99 8.14 -2.38 -0.02 1.98 16 47 H 0.09 1.59 7.44 -2.39 -0.02 1.57 16 48 H 0.12 1.11 7.52 -2.39 -0.02 1.10 16 Total: -1.00 -77.21 382.02 2.71 -74.50 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.94 Total: 16.85 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 5.24 Total: 20.32 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -4.17 Total: -97.19 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.11 Total: -51.05 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.22 Total: -9.07 kcal Total: -77.21 2.71 -74.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118456513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.468 kcal (2) G-P(sol) polarization free energy of solvation -77.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds