Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99931 * 2 1 4 4 C 1.50697 * 109.47371 * 179.97438 * 3 2 1 5 5 C 1.33808 * 122.45312 * 269.97933 * 4 3 2 6 6 S 1.70614 * 110.95693 * 179.74210 * 5 4 3 7 7 C 1.75832 * 91.56394 * 0.35693 * 6 5 4 8 8 C 1.46579 * 125.45820 * 179.91510 * 7 6 5 9 9 O 1.21703 * 119.99810 * 179.69089 * 8 7 6 10 10 N 1.34777 * 120.00170 * 359.69169 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27960 * 10 8 7 12 12 H 1.09004 * 109.47372 * 34.71852 * 11 10 8 13 13 C 1.52997 * 109.47036 * 274.72131 * 11 10 8 14 14 C 1.52999 * 109.46963 * 154.72290 * 11 10 8 15 15 C 1.52997 * 109.47080 * 294.99494 * 14 11 10 16 16 C 1.53003 * 109.47411 * 180.02562 * 15 14 11 17 17 C 1.52997 * 109.47411 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.46938 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99721 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00287 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00196 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99660 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00438 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46757 * 89.99429 * 23 21 19 25 25 H 1.48497 * 109.47059 * 209.99496 * 23 21 19 26 26 H 1.48499 * 109.46945 * 329.99854 * 23 21 19 27 27 C 1.36650 * 109.07922 * 359.64469 * 7 6 5 28 28 H 1.08998 * 109.47468 * 300.00070 * 1 2 3 29 29 H 1.08999 * 109.47210 * 60.00356 * 1 2 3 30 30 H 1.09008 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47150 * 60.00015 * 3 2 1 32 32 H 1.09002 * 109.46932 * 299.99725 * 3 2 1 33 33 H 1.08004 * 124.52130 * 0.05811 * 5 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47293 * 60.00168 * 13 11 10 36 36 H 1.09003 * 109.47189 * 180.02562 * 13 11 10 37 37 H 1.09009 * 109.47238 * 300.00198 * 13 11 10 38 38 H 1.08997 * 109.47492 * 54.99915 * 14 11 10 39 39 H 1.09007 * 109.47243 * 174.99697 * 14 11 10 40 40 H 1.09002 * 109.47641 * 299.99883 * 15 14 11 41 41 H 1.08998 * 109.46968 * 60.00255 * 15 14 11 42 42 H 1.09002 * 109.46933 * 300.00830 * 16 15 14 43 43 H 1.09007 * 109.47158 * 60.00052 * 16 15 14 44 44 H 1.08997 * 109.47193 * 299.99893 * 17 16 15 45 45 H 1.08998 * 109.46968 * 60.00156 * 17 16 15 46 46 H 0.96995 * 119.99983 * 0.02562 * 18 17 16 47 47 H 0.97003 * 120.00102 * 180.02562 * 22 21 19 48 48 H 1.08000 * 123.34874 * 180.28406 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2278 1.1305 1.1301 6 16 5.8940 0.9913 0.7907 7 6 5.5930 1.0222 -0.9414 8 6 6.6197 0.9408 -1.9844 9 8 6.2981 0.9658 -3.1579 10 7 7.9197 0.8383 -1.6439 11 6 8.9462 0.7632 -2.6865 12 1 8.6470 1.3773 -3.5359 13 6 9.1080 -0.6893 -3.1391 14 6 10.2763 1.2753 -2.1303 15 6 10.1496 2.7623 -1.7935 16 6 11.4800 3.2746 -1.2379 17 6 11.3535 4.7619 -0.9018 18 7 12.6272 5.2522 -0.3692 19 6 12.7538 6.5635 0.0041 20 1 11.9148 7.2365 -0.0945 21 6 13.9607 7.0283 0.5082 22 7 14.9833 6.2084 0.6278 23 14 14.1337 8.8174 1.0168 24 1 13.7644 8.9630 2.4478 25 1 15.5396 9.2538 0.8214 26 1 13.2344 9.6574 0.1856 27 6 4.2482 1.1281 -1.1592 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8062 1.1635 2.1239 34 1 8.1759 0.8188 -0.7086 35 1 8.1604 -1.0541 -3.5353 36 1 9.8720 -0.7453 -3.9145 37 1 9.4071 -1.3034 -2.2896 38 1 10.5314 0.7189 -1.2284 39 1 11.0593 1.1370 -2.8760 40 1 9.8947 3.3188 -2.6955 41 1 9.3668 2.9006 -1.0479 42 1 11.7355 2.7182 -0.3361 43 1 12.2627 3.1365 -1.9840 44 1 11.0984 5.3178 -1.8039 45 1 10.5708 4.9005 -0.1560 46 1 13.3808 4.6479 -0.2811 47 1 15.8267 6.5330 0.9804 48 1 3.8072 1.1622 -2.1445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171683394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -58.805584 kcal Electronic energy + Delta-G solvation = -25926.690926 eV Core-core repulsion = 22108.098442 eV Total energy + Delta-G solvation = -3818.592484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17674 -39.10112 -37.43963 -36.78070 -35.24337 -33.28857 -31.92227 -30.74602 -30.06879 -28.21322 -27.44052 -26.25099 -24.97733 -24.05486 -22.18931 -21.18584 -20.81867 -20.64665 -19.40001 -18.80029 -17.01150 -16.88675 -16.77146 -16.52659 -15.84566 -15.63751 -15.27960 -15.05615 -14.69041 -14.38465 -13.96067 -13.78287 -13.58446 -13.42918 -13.23964 -13.14339 -12.94717 -12.82021 -12.55025 -12.48361 -12.25845 -11.82373 -11.76274 -11.46656 -11.30302 -11.25200 -10.99507 -10.79946 -10.69923 -10.41680 -10.30833 -10.23916 -10.16318 -9.97691 -9.65541 -9.38785 -9.14715 -8.92014 -8.84172 -6.88464 -5.73906 -3.02132 0.15195 1.08863 1.46472 1.85209 2.88391 2.94723 3.45019 3.49904 3.51953 3.58618 4.37645 4.48725 4.52621 4.63726 4.71158 4.77126 4.88046 4.90168 4.90447 4.95130 4.98314 5.15689 5.22017 5.26409 5.40086 5.44764 5.47120 5.56462 5.61798 5.69961 5.78549 5.83927 5.89816 5.94489 5.96741 6.11230 6.20603 6.31931 6.36376 6.40223 6.48352 6.64868 6.91686 6.95575 7.22279 7.72528 7.93559 8.45530 9.56258 10.15685 10.50361 11.49195 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.001916 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.778786 B =14612.059840 C =16249.118029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.122 3.878 4 C -0.123 4.123 5 C -0.210 4.210 6 S 0.221 5.779 7 C -0.269 4.269 8 C 0.593 3.407 9 O -0.530 6.530 10 N -0.718 5.718 11 C 0.142 3.858 12 H 0.092 0.908 13 C -0.164 4.164 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.039 4.039 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.398 0.602 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.562 -17.435 -1.202 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.044 3.956 4 C -0.137 4.137 5 C -0.348 4.348 6 S 0.490 5.510 7 C -0.389 4.389 8 C 0.379 3.621 9 O -0.408 6.408 10 N -0.369 5.369 11 C 0.038 3.962 12 H 0.110 0.890 13 C -0.222 4.222 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.024 3.976 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.072 4.072 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.189 0.811 34 H 0.232 0.768 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -25.350 -17.516 -1.117 30.833 hybrid contribution -1.076 1.164 0.126 1.590 sum -26.426 -16.352 -0.991 31.092 Atomic orbital electron populations 1.22771 0.80778 1.02977 1.00110 1.87974 1.19729 1.27412 1.95430 1.21010 0.88242 0.85117 1.01247 1.18404 0.95915 1.07413 0.91945 1.25243 0.98937 1.07126 1.03486 1.83131 1.03736 1.66171 0.98002 1.24607 0.98108 1.18839 0.97378 1.16890 0.81694 0.76183 0.87317 1.90829 1.81464 1.50380 1.18151 1.45988 1.05675 1.74857 1.10399 1.21105 0.87176 0.97121 0.90812 0.89013 1.22184 1.02422 0.95980 1.01600 1.21957 0.95685 0.96993 1.01930 1.21533 0.98274 0.94319 1.01202 1.21725 0.96448 0.97411 1.00736 1.20651 0.89829 0.91266 0.95811 1.42383 1.09549 1.09364 1.76562 1.19262 0.96614 0.86754 1.34354 0.91235 1.24744 0.96089 0.97990 1.02339 1.69663 1.02422 1.34153 1.52119 0.86180 0.76854 0.84771 0.78356 1.21752 1.21754 1.20784 1.20585 0.90957 0.95751 0.99860 0.93978 0.93854 0.89466 0.92156 0.91937 0.81135 0.76774 0.92176 0.91310 0.92405 0.91273 0.89954 0.91886 0.92184 0.92103 0.92014 0.96560 0.96619 0.78353 0.93567 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.32 10.69 -35.23 -0.38 -3.70 16 3 C 0.12 0.88 6.18 36.00 0.22 1.10 16 4 C -0.12 -1.07 5.41 -106.46 -0.58 -1.65 16 5 C -0.21 -1.60 10.67 29.18 0.31 -1.29 16 6 S 0.22 1.73 22.16 -107.50 -2.38 -0.65 16 7 C -0.27 -2.82 6.45 -36.79 -0.24 -3.05 16 8 C 0.59 7.22 7.75 -12.90 -0.10 7.12 16 9 O -0.53 -8.14 16.50 5.19 0.09 -8.05 16 10 N -0.72 -7.27 4.52 -55.15 -0.25 -7.52 16 11 C 0.14 1.43 2.58 -67.93 -0.17 1.25 16 12 H 0.09 1.08 7.57 -51.93 -0.39 0.68 16 13 C -0.16 -1.48 9.49 37.16 0.35 -1.12 16 14 C -0.13 -1.26 4.75 -26.73 -0.13 -1.39 16 15 C -0.12 -1.43 5.10 -26.73 -0.14 -1.57 16 16 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 17 C 0.15 3.14 6.26 -4.04 -0.03 3.12 16 18 N -0.73 -19.23 5.60 -59.91 -0.34 -19.56 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 23 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.04 -0.39 9.80 -40.43 -0.40 -0.79 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 33 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.40 3.35 7.72 -40.82 -0.31 3.04 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 414.72 15.07 6.25 6.25 Total: -1.00 -34.71 414.72 -9.63 -44.34 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.15 Total: 5.89 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.16 Total: -6.73 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.14 Total: -55.06 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.29 Total: -11.75 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.38 Total: -0.65 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.71 -9.63 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171683394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.469 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds