Wall clock time and date at job start Sat Apr 11 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99931 * 2 1 4 4 C 1.50697 * 109.47371 * 179.97438 * 3 2 1 5 5 C 1.33808 * 122.45312 * 269.97933 * 4 3 2 6 6 S 1.70614 * 110.95693 * 179.74210 * 5 4 3 7 7 C 1.75832 * 91.56394 * 0.35693 * 6 5 4 8 8 C 1.46579 * 125.45820 * 179.91510 * 7 6 5 9 9 O 1.21703 * 119.99810 * 179.69089 * 8 7 6 10 10 N 1.34777 * 120.00170 * 359.69169 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27960 * 10 8 7 12 12 H 1.09004 * 109.47372 * 34.71852 * 11 10 8 13 13 C 1.52997 * 109.47036 * 274.72131 * 11 10 8 14 14 C 1.52999 * 109.46963 * 154.72290 * 11 10 8 15 15 C 1.52997 * 109.47080 * 294.99494 * 14 11 10 16 16 C 1.53003 * 109.47411 * 180.02562 * 15 14 11 17 17 C 1.52997 * 109.47411 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.46938 * 179.97438 * 17 16 15 19 19 C 1.36935 * 119.99721 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00287 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00196 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99660 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00438 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46757 * 89.99429 * 23 21 19 25 25 H 1.48497 * 109.47059 * 209.99496 * 23 21 19 26 26 H 1.48499 * 109.46945 * 329.99854 * 23 21 19 27 27 C 1.36650 * 109.07922 * 359.64469 * 7 6 5 28 28 H 1.08998 * 109.47468 * 300.00070 * 1 2 3 29 29 H 1.08999 * 109.47210 * 60.00356 * 1 2 3 30 30 H 1.09008 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47150 * 60.00015 * 3 2 1 32 32 H 1.09002 * 109.46932 * 299.99725 * 3 2 1 33 33 H 1.08004 * 124.52130 * 0.05811 * 5 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47293 * 60.00168 * 13 11 10 36 36 H 1.09003 * 109.47189 * 180.02562 * 13 11 10 37 37 H 1.09009 * 109.47238 * 300.00198 * 13 11 10 38 38 H 1.08997 * 109.47492 * 54.99915 * 14 11 10 39 39 H 1.09007 * 109.47243 * 174.99697 * 14 11 10 40 40 H 1.09002 * 109.47641 * 299.99883 * 15 14 11 41 41 H 1.08998 * 109.46968 * 60.00255 * 15 14 11 42 42 H 1.09002 * 109.46933 * 300.00830 * 16 15 14 43 43 H 1.09007 * 109.47158 * 60.00052 * 16 15 14 44 44 H 1.08997 * 109.47193 * 299.99893 * 17 16 15 45 45 H 1.08998 * 109.46968 * 60.00156 * 17 16 15 46 46 H 0.96995 * 119.99983 * 0.02562 * 18 17 16 47 47 H 0.97003 * 120.00102 * 180.02562 * 22 21 19 48 48 H 1.08000 * 123.34874 * 180.28406 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2278 1.1305 1.1301 6 16 5.8940 0.9913 0.7907 7 6 5.5930 1.0222 -0.9414 8 6 6.6197 0.9408 -1.9844 9 8 6.2981 0.9658 -3.1579 10 7 7.9197 0.8383 -1.6439 11 6 8.9462 0.7632 -2.6865 12 1 8.6470 1.3773 -3.5359 13 6 9.1080 -0.6893 -3.1391 14 6 10.2763 1.2753 -2.1303 15 6 10.1496 2.7623 -1.7935 16 6 11.4800 3.2746 -1.2379 17 6 11.3535 4.7619 -0.9018 18 7 12.6272 5.2522 -0.3692 19 6 12.7538 6.5635 0.0041 20 1 11.9148 7.2365 -0.0945 21 6 13.9607 7.0283 0.5082 22 7 14.9833 6.2084 0.6278 23 14 14.1337 8.8174 1.0168 24 1 13.7644 8.9630 2.4478 25 1 15.5396 9.2538 0.8214 26 1 13.2344 9.6574 0.1856 27 6 4.2482 1.1281 -1.1592 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8062 1.1635 2.1239 34 1 8.1759 0.8188 -0.7086 35 1 8.1604 -1.0541 -3.5353 36 1 9.8720 -0.7453 -3.9145 37 1 9.4071 -1.3034 -2.2896 38 1 10.5314 0.7189 -1.2284 39 1 11.0593 1.1370 -2.8760 40 1 9.8947 3.3188 -2.6955 41 1 9.3668 2.9006 -1.0479 42 1 11.7355 2.7182 -0.3361 43 1 12.2627 3.1365 -1.9840 44 1 11.0984 5.3178 -1.8039 45 1 10.5708 4.9005 -0.1560 46 1 13.3808 4.6479 -0.2811 47 1 15.8267 6.5330 0.9804 48 1 3.8072 1.1622 -2.1445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171683394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:52 Heat of formation + Delta-G solvation = -81.462018 kcal Electronic energy + Delta-G solvation = -25927.673382 eV Core-core repulsion = 22108.098442 eV Total energy + Delta-G solvation = -3819.574940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05274 -39.73100 -38.20011 -37.70950 -36.80635 -34.80484 -33.18212 -32.09514 -30.99624 -28.82922 -28.72407 -26.75016 -26.05897 -25.46272 -23.64349 -22.14080 -21.97431 -21.66232 -20.08005 -19.55151 -19.11289 -17.54504 -17.35306 -17.33886 -16.68949 -16.47691 -16.31239 -16.23966 -16.04772 -15.41099 -15.27955 -15.19307 -14.59070 -14.44582 -14.24887 -14.12733 -14.00575 -13.79426 -13.26648 -13.09764 -13.05251 -12.88446 -12.87621 -12.85537 -12.46153 -12.31302 -12.27137 -12.15998 -11.94547 -11.88031 -11.82417 -11.50553 -11.40982 -11.18637 -10.93607 -10.65813 -10.27582 -9.87069 -9.54411 -9.00990 -7.96300 -5.25450 -0.56198 0.42328 0.80850 1.15511 1.46718 1.48764 1.57429 2.06732 2.08095 2.55482 3.09981 3.36995 3.55893 3.74085 3.94108 4.00657 4.04053 4.07105 4.14837 4.22079 4.34402 4.39479 4.40610 4.49669 4.56523 4.59566 4.60003 4.64628 4.75128 4.77776 4.87498 4.87975 4.92563 4.98435 5.01358 5.09697 5.17851 5.26016 5.28394 5.31292 5.41250 5.46078 5.52797 5.53941 6.19327 6.26574 6.39523 7.06738 7.32378 8.09055 8.32793 9.27227 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.001916 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.778786 B =14612.059840 C =16249.118029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.121 3.879 4 C -0.139 4.139 5 C -0.203 4.203 6 S 0.261 5.739 7 C -0.300 4.300 8 C 0.590 3.410 9 O -0.573 6.573 10 N -0.709 5.709 11 C 0.143 3.857 12 H 0.073 0.927 13 C -0.158 4.158 14 C -0.117 4.117 15 C -0.107 4.107 16 C -0.112 4.112 17 C 0.147 3.853 18 N -0.748 5.748 19 C -0.251 4.251 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.271 1.271 27 C -0.046 4.046 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.197 0.803 34 H 0.407 0.593 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.012 0.988 45 H 0.018 0.982 46 H 0.374 0.626 47 H 0.252 0.748 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.405 -17.569 0.160 32.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.043 3.957 4 C -0.151 4.151 5 C -0.341 4.341 6 S 0.530 5.470 7 C -0.420 4.420 8 C 0.378 3.622 9 O -0.454 6.454 10 N -0.360 5.360 11 C 0.039 3.961 12 H 0.091 0.909 13 C -0.216 4.216 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.150 4.150 17 C 0.021 3.979 18 N -0.391 5.391 19 C -0.383 4.383 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.804 3.196 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.196 1.196 27 C -0.080 4.080 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.215 0.785 34 H 0.244 0.756 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.030 0.970 45 H 0.036 0.964 46 H 0.206 0.794 47 H 0.061 0.939 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.218 -17.659 0.257 31.612 hybrid contribution -0.883 1.186 -0.274 1.503 sum -27.101 -16.473 -0.017 31.715 Atomic orbital electron populations 1.22937 0.79271 1.03803 1.01117 1.87924 1.21500 1.28291 1.95651 1.21097 0.87279 0.84909 1.02419 1.18550 0.96923 1.08026 0.91650 1.25632 0.98878 1.05232 1.04392 1.82921 1.03692 1.65147 0.95276 1.24569 0.97869 1.20699 0.98875 1.17168 0.82441 0.75488 0.87151 1.90796 1.82165 1.52543 1.19925 1.45950 1.05154 1.73955 1.10990 1.21071 0.87075 0.97650 0.90280 0.90925 1.22128 1.01955 0.95082 1.02435 1.21868 0.95669 0.95031 1.02937 1.21441 0.96261 0.95996 1.00796 1.21593 0.98268 0.94139 1.00954 1.20860 0.87579 0.94272 0.95183 1.42613 1.11081 1.08610 1.76780 1.19665 0.96789 0.88074 1.33788 0.90906 1.25597 0.95876 1.02329 1.02965 1.69815 1.02766 1.36034 1.53290 0.85115 0.76639 0.79765 0.78088 1.21148 1.21936 1.19606 1.20698 0.91254 0.95778 1.00237 0.92600 0.93191 0.88826 0.90220 0.91512 0.78542 0.75636 0.93893 0.90038 0.91066 0.89670 0.88992 0.92503 0.91835 0.91737 0.92271 0.96969 0.96423 0.79386 0.93906 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.74 10.69 -148.98 -1.59 -8.34 16 3 C 0.12 1.60 6.18 71.24 0.44 2.04 16 4 C -0.14 -2.28 5.41 -21.05 -0.11 -2.40 16 5 C -0.20 -2.68 10.67 66.81 0.71 -1.97 16 6 S 0.26 3.65 22.16 -56.49 -1.25 2.40 16 7 C -0.30 -6.26 6.45 24.08 0.16 -6.11 16 8 C 0.59 14.60 7.75 86.42 0.67 15.27 16 9 O -0.57 -18.42 16.50 -4.36 -0.07 -18.49 16 10 N -0.71 -13.87 4.52 -446.60 -2.02 -15.89 16 11 C 0.14 2.76 2.58 44.99 0.12 2.87 16 12 H 0.07 1.71 7.57 -2.39 -0.02 1.70 16 13 C -0.16 -2.66 9.49 71.98 0.68 -1.98 16 14 C -0.12 -2.08 4.75 30.59 0.15 -1.93 16 15 C -0.11 -2.50 5.10 30.59 0.16 -2.34 16 16 C -0.11 -3.41 5.33 30.59 0.16 -3.25 16 17 C 0.15 6.02 6.26 86.38 0.54 6.56 16 18 N -0.75 -39.18 5.60 -343.45 -1.92 -41.10 16 19 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 22 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 23 Si 0.98 46.56 29.55 68.60 2.03 48.58 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 27 C -0.05 -0.94 9.80 21.72 0.21 -0.73 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 32 H 0.07 0.78 8.13 -2.39 -0.02 0.76 16 33 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.41 6.25 7.72 -92.71 -0.72 5.53 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.45 7.75 -2.39 -0.02 1.43 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.37 20.56 7.67 -92.71 -0.71 19.85 16 47 H 0.25 15.01 8.31 -92.71 -0.77 14.23 16 48 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -74.99 414.72 1.41 -73.58 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.47 Total: 28.80 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 6.44 Total: -10.04 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -3.66 Total: -116.49 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.66 Total: -26.83 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.25 Total: 2.40 kcal Total: -74.99 1.41 -73.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171683394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.884 kcal (2) G-P(sol) polarization free energy of solvation -74.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds