Wall clock time and date at job start Sat Apr 11 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99721 * 2 1 4 4 C 1.50703 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.33817 * 122.45371 * 269.98457 * 4 3 2 6 6 S 1.70615 * 110.95419 * 179.76829 * 5 4 3 7 7 C 1.75836 * 91.56313 * 0.32145 * 6 5 4 8 8 C 1.46579 * 125.45724 * 179.97438 * 7 6 5 9 9 O 1.21703 * 120.00026 * 179.69392 * 8 7 6 10 10 N 1.34777 * 119.99723 * 359.96763 * 8 7 6 11 11 C 1.46505 * 119.99724 * 179.72472 * 10 8 7 12 12 H 1.09008 * 109.47120 * 325.00024 * 11 10 8 13 13 C 1.52996 * 109.47130 * 85.00158 * 11 10 8 14 14 C 1.52998 * 109.47085 * 205.00369 * 11 10 8 15 15 C 1.53004 * 109.47475 * 64.99994 * 14 11 10 16 16 C 1.52994 * 109.47144 * 180.02562 * 15 14 11 17 17 C 1.53004 * 109.47144 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47473 * 180.02562 * 17 16 15 19 19 C 1.36936 * 120.00128 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99687 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99741 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99848 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00403 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47186 * 89.99933 * 23 21 19 25 25 H 1.48503 * 109.47366 * 210.00365 * 23 21 19 26 26 H 1.48504 * 109.46994 * 329.99833 * 23 21 19 27 27 C 1.36652 * 109.08350 * 359.67974 * 7 6 5 28 28 H 1.09001 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47137 * 299.99579 * 1 2 3 30 30 H 1.09003 * 109.47395 * 59.99678 * 1 2 3 31 31 H 1.09004 * 109.46921 * 60.00767 * 3 2 1 32 32 H 1.08994 * 109.47616 * 300.00364 * 3 2 1 33 33 H 1.08002 * 124.51756 * 0.02562 * 5 4 3 34 34 H 0.97000 * 120.00483 * 359.72904 * 10 8 7 35 35 H 1.09002 * 109.46807 * 60.00065 * 13 11 10 36 36 H 1.09003 * 109.47061 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.47099 * 300.00036 * 13 11 10 38 38 H 1.09000 * 109.47070 * 184.99947 * 14 11 10 39 39 H 1.09001 * 109.47293 * 305.00106 * 14 11 10 40 40 H 1.09000 * 109.46933 * 300.00037 * 15 14 11 41 41 H 1.09001 * 109.46769 * 59.99791 * 15 14 11 42 42 H 1.09000 * 109.47152 * 299.99800 * 16 15 14 43 43 H 1.09001 * 109.47542 * 60.00162 * 16 15 14 44 44 H 1.09000 * 109.46933 * 299.99935 * 17 16 15 45 45 H 1.08992 * 109.47030 * 59.99718 * 17 16 15 46 46 H 0.97001 * 119.99562 * 359.97438 * 18 17 16 47 47 H 0.96996 * 120.00298 * 179.97438 * 22 21 19 48 48 H 1.08000 * 123.34803 * 180.27390 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2279 1.1305 1.1301 6 16 5.8942 0.9920 0.7907 7 6 5.5930 1.0222 -0.9414 8 6 6.6195 0.9399 -1.9845 9 8 6.2979 0.9645 -3.1580 10 7 7.9190 0.8313 -1.6440 11 6 8.9445 0.7429 -2.6866 12 1 8.5523 0.1826 -3.5354 13 6 9.3327 2.1514 -3.1408 14 6 10.1775 0.0285 -2.1299 15 6 9.8186 -1.4198 -1.7915 16 6 11.0515 -2.1339 -1.2341 17 6 10.6927 -3.5824 -0.8963 18 7 11.8731 -4.2661 -0.3621 19 6 11.7920 -5.5809 0.0120 20 1 10.8578 -6.1137 -0.0865 21 6 12.9107 -6.2288 0.5177 22 7 12.8327 -7.4924 0.8776 23 14 14.5267 -5.3075 0.6873 24 1 14.5959 -4.6721 2.0278 25 1 15.6571 -6.2577 0.5310 26 1 14.6119 -4.2601 -0.3620 27 6 4.2481 1.1282 -1.1592 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.8063 1.1639 2.1239 34 1 8.1754 0.8116 -0.7087 35 1 9.7249 2.7116 -2.2920 36 1 10.0953 2.0856 -3.9169 37 1 8.4542 2.6603 -3.5374 38 1 10.9724 0.0411 -2.8757 39 1 10.5170 0.5388 -1.2285 40 1 9.0238 -1.4323 -1.0456 41 1 9.4791 -1.9300 -2.6928 42 1 11.8466 -2.1214 -1.9796 43 1 11.3906 -1.6235 -0.3327 44 1 9.8974 -3.5953 -0.1510 45 1 10.3539 -4.0925 -1.7979 46 1 12.7122 -3.7876 -0.2740 47 1 13.6144 -7.9453 1.2306 48 1 3.8071 1.1622 -2.1445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171683395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:56 Heat of formation + Delta-G solvation = -54.336876 kcal Electronic energy + Delta-G solvation = -26028.333668 eV Core-core repulsion = 22209.934962 eV Total energy + Delta-G solvation = -3818.398706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20866 -39.10645 -37.45359 -36.83934 -35.41192 -33.34451 -31.95900 -30.94731 -30.23742 -28.21029 -27.76685 -26.24002 -25.02052 -24.03734 -21.95787 -21.16200 -20.91745 -20.77831 -19.41822 -18.82997 -17.48169 -16.88009 -16.79399 -16.57049 -15.84164 -15.64047 -15.32491 -15.12503 -14.61497 -14.45452 -14.14999 -13.76294 -13.58729 -13.52900 -13.42429 -13.07522 -13.03787 -12.69601 -12.55409 -12.52591 -12.30607 -11.91677 -11.80761 -11.66711 -11.45969 -11.30408 -11.17439 -10.86551 -10.84295 -10.41042 -10.34636 -10.26421 -10.14763 -10.08319 -9.56385 -9.42637 -9.17420 -8.93626 -8.86184 -7.19342 -5.73819 -3.08943 0.13318 1.07137 1.44422 1.84036 2.83186 2.93426 3.38914 3.41489 3.46462 3.60833 4.34500 4.47297 4.50197 4.61584 4.67125 4.76545 4.83255 4.86659 4.90956 4.92537 4.95836 5.14481 5.18873 5.26532 5.30653 5.34062 5.44280 5.49773 5.55380 5.58199 5.66232 5.79134 5.84943 5.87092 5.92386 6.02605 6.08199 6.13137 6.19881 6.29757 6.38079 6.67537 6.80556 6.84137 7.18385 7.90277 8.03475 8.45542 9.25039 9.97487 10.17890 11.44788 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.002072 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.854742 B =13513.164499 C =15169.336902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.123 3.877 4 C -0.124 4.124 5 C -0.209 4.209 6 S 0.220 5.780 7 C -0.270 4.270 8 C 0.594 3.406 9 O -0.530 6.530 10 N -0.718 5.718 11 C 0.142 3.858 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.156 3.844 18 N -0.758 5.758 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.038 4.038 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.398 0.602 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 26.862 -1.824 34.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.044 3.956 4 C -0.137 4.137 5 C -0.347 4.347 6 S 0.489 5.511 7 C -0.390 4.390 8 C 0.380 3.620 9 O -0.408 6.408 10 N -0.370 5.370 11 C 0.038 3.962 12 H 0.110 0.890 13 C -0.222 4.222 14 C -0.166 4.166 15 C -0.154 4.154 16 C -0.167 4.167 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.071 4.071 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.189 0.811 34 H 0.232 0.768 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.192 0.808 47 H 0.069 0.931 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.735 26.362 -1.721 32.975 hybrid contribution -0.280 0.777 -0.045 0.827 sum -20.014 27.139 -1.767 33.767 Atomic orbital electron populations 1.22777 0.80738 1.03108 1.00002 1.88002 1.19755 1.27224 1.95398 1.21000 0.88227 0.85263 1.01103 1.18419 0.95959 1.07386 0.91937 1.25245 0.98934 1.07037 1.03500 1.83110 1.03807 1.66216 0.97996 1.24596 0.98136 1.18910 0.97362 1.16890 0.81627 0.76193 0.87325 1.90832 1.81489 1.50291 1.18159 1.45982 1.05774 1.74877 1.10359 1.21097 0.87558 0.96702 0.90864 0.88958 1.22184 1.01945 0.96493 1.01556 1.21956 0.96559 0.96180 1.01874 1.21528 0.98351 0.94097 1.01413 1.21775 0.97451 0.96819 1.00662 1.20634 0.90343 0.89789 0.96371 1.42738 1.08394 1.10956 1.78267 1.19094 0.98074 0.85745 1.34369 0.89268 1.24695 0.97640 0.95848 1.01260 1.69707 1.29608 1.09673 1.49384 0.86509 0.84826 0.79106 0.77868 1.21110 1.21737 1.20368 1.20590 0.90943 0.95667 0.99872 0.89356 0.94005 0.93898 0.92239 0.92020 0.81117 0.76785 0.92432 0.91332 0.92144 0.89997 0.91313 0.91962 0.91657 0.92076 0.92153 0.95696 0.95713 0.80752 0.93104 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.50 10.69 -35.23 -0.38 -3.88 16 3 C 0.12 0.87 6.18 36.01 0.22 1.09 16 4 C -0.12 -1.06 5.41 -106.45 -0.58 -1.63 16 5 C -0.21 -1.56 10.67 29.18 0.31 -1.25 16 6 S 0.22 1.68 22.16 -107.50 -2.38 -0.71 16 7 C -0.27 -2.76 6.45 -36.79 -0.24 -3.00 16 8 C 0.59 7.04 7.75 -12.90 -0.10 6.94 16 9 O -0.53 -7.99 16.50 5.19 0.09 -7.90 16 10 N -0.72 -6.96 4.53 -55.14 -0.25 -7.21 16 11 C 0.14 1.35 2.57 -67.93 -0.17 1.18 16 12 H 0.09 1.04 7.58 -51.92 -0.39 0.65 16 13 C -0.16 -1.38 9.48 37.16 0.35 -1.02 16 14 C -0.13 -1.17 4.75 -26.73 -0.13 -1.30 16 15 C -0.12 -1.36 5.10 -26.73 -0.14 -1.50 16 16 C -0.13 -1.91 5.33 -26.73 -0.14 -2.05 16 17 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 18 N -0.76 -18.64 5.41 -59.91 -0.32 -18.96 16 19 C -0.24 -7.11 10.47 -15.06 -0.16 -7.26 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 21 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 22 N -0.94 -29.96 13.97 55.49 0.78 -29.19 16 23 Si 0.89 22.46 27.73 -169.99 -4.71 17.74 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 27 C -0.04 -0.38 9.80 -40.43 -0.40 -0.77 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 33 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.40 3.16 7.72 -40.82 -0.31 2.85 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.36 8.54 5.53 -40.82 -0.23 8.32 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 48 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 411.61 15.07 6.20 6.20 Total: -1.00 -35.82 411.61 -9.27 -45.08 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.11 Total: 5.14 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.17 Total: -6.31 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.20 Total: -55.36 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.29 Total: -11.78 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.38 Total: -0.71 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.82 -9.27 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171683395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.255 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds