Wall clock time and date at job start Sat Apr 11 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99721 * 2 1 4 4 C 1.50703 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.33817 * 122.45371 * 269.98457 * 4 3 2 6 6 S 1.70615 * 110.95419 * 179.76829 * 5 4 3 7 7 C 1.75836 * 91.56313 * 0.32145 * 6 5 4 8 8 C 1.46579 * 125.45724 * 179.97438 * 7 6 5 9 9 O 1.21703 * 120.00026 * 179.69392 * 8 7 6 10 10 N 1.34777 * 119.99723 * 359.96763 * 8 7 6 11 11 C 1.46505 * 119.99724 * 179.72472 * 10 8 7 12 12 H 1.09008 * 109.47120 * 325.00024 * 11 10 8 13 13 C 1.52996 * 109.47130 * 85.00158 * 11 10 8 14 14 C 1.52998 * 109.47085 * 205.00369 * 11 10 8 15 15 C 1.53004 * 109.47475 * 64.99994 * 14 11 10 16 16 C 1.52994 * 109.47144 * 180.02562 * 15 14 11 17 17 C 1.53004 * 109.47144 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47473 * 180.02562 * 17 16 15 19 19 C 1.36936 * 120.00128 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99687 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99741 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99848 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00403 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47186 * 89.99933 * 23 21 19 25 25 H 1.48503 * 109.47366 * 210.00365 * 23 21 19 26 26 H 1.48504 * 109.46994 * 329.99833 * 23 21 19 27 27 C 1.36652 * 109.08350 * 359.67974 * 7 6 5 28 28 H 1.09001 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47137 * 299.99579 * 1 2 3 30 30 H 1.09003 * 109.47395 * 59.99678 * 1 2 3 31 31 H 1.09004 * 109.46921 * 60.00767 * 3 2 1 32 32 H 1.08994 * 109.47616 * 300.00364 * 3 2 1 33 33 H 1.08002 * 124.51756 * 0.02562 * 5 4 3 34 34 H 0.97000 * 120.00483 * 359.72904 * 10 8 7 35 35 H 1.09002 * 109.46807 * 60.00065 * 13 11 10 36 36 H 1.09003 * 109.47061 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.47099 * 300.00036 * 13 11 10 38 38 H 1.09000 * 109.47070 * 184.99947 * 14 11 10 39 39 H 1.09001 * 109.47293 * 305.00106 * 14 11 10 40 40 H 1.09000 * 109.46933 * 300.00037 * 15 14 11 41 41 H 1.09001 * 109.46769 * 59.99791 * 15 14 11 42 42 H 1.09000 * 109.47152 * 299.99800 * 16 15 14 43 43 H 1.09001 * 109.47542 * 60.00162 * 16 15 14 44 44 H 1.09000 * 109.46933 * 299.99935 * 17 16 15 45 45 H 1.08992 * 109.47030 * 59.99718 * 17 16 15 46 46 H 0.97001 * 119.99562 * 359.97438 * 18 17 16 47 47 H 0.96996 * 120.00298 * 179.97438 * 22 21 19 48 48 H 1.08000 * 123.34803 * 180.27390 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2279 1.1305 1.1301 6 16 5.8942 0.9920 0.7907 7 6 5.5930 1.0222 -0.9414 8 6 6.6195 0.9399 -1.9845 9 8 6.2979 0.9645 -3.1580 10 7 7.9190 0.8313 -1.6440 11 6 8.9445 0.7429 -2.6866 12 1 8.5523 0.1826 -3.5354 13 6 9.3327 2.1514 -3.1408 14 6 10.1775 0.0285 -2.1299 15 6 9.8186 -1.4198 -1.7915 16 6 11.0515 -2.1339 -1.2341 17 6 10.6927 -3.5824 -0.8963 18 7 11.8731 -4.2661 -0.3621 19 6 11.7920 -5.5809 0.0120 20 1 10.8578 -6.1137 -0.0865 21 6 12.9107 -6.2288 0.5177 22 7 12.8327 -7.4924 0.8776 23 14 14.5267 -5.3075 0.6873 24 1 14.5959 -4.6721 2.0278 25 1 15.6571 -6.2577 0.5310 26 1 14.6119 -4.2601 -0.3620 27 6 4.2481 1.1282 -1.1592 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.8063 1.1639 2.1239 34 1 8.1754 0.8116 -0.7087 35 1 9.7249 2.7116 -2.2920 36 1 10.0953 2.0856 -3.9169 37 1 8.4542 2.6603 -3.5374 38 1 10.9724 0.0411 -2.8757 39 1 10.5170 0.5388 -1.2285 40 1 9.0238 -1.4323 -1.0456 41 1 9.4791 -1.9300 -2.6928 42 1 11.8466 -2.1214 -1.9796 43 1 11.3906 -1.6235 -0.3327 44 1 9.8974 -3.5953 -0.1510 45 1 10.3539 -4.0925 -1.7979 46 1 12.7122 -3.7876 -0.2740 47 1 13.6144 -7.9453 1.2306 48 1 3.8071 1.1622 -2.1445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171683395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:55 Heat of formation + Delta-G solvation = -78.723634 kcal Electronic energy + Delta-G solvation = -26029.391157 eV Core-core repulsion = 22209.934962 eV Total energy + Delta-G solvation = -3819.456195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05515 -39.73224 -38.22838 -37.74479 -36.91796 -34.81696 -33.36308 -32.33492 -31.04630 -29.06530 -28.72894 -26.75712 -25.99469 -25.36672 -23.46902 -22.25523 -21.98820 -21.66728 -20.08719 -19.66210 -19.50217 -17.53897 -17.37569 -17.33731 -16.63829 -16.48418 -16.32672 -16.24343 -16.06969 -15.79166 -15.23348 -14.89214 -14.67852 -14.42486 -14.36833 -14.18038 -14.01062 -13.88423 -13.52020 -13.16529 -13.05945 -12.96757 -12.92636 -12.87822 -12.46486 -12.31804 -12.30029 -12.06065 -11.94052 -11.89035 -11.79375 -11.52318 -11.45929 -11.19112 -10.97345 -10.65844 -10.27905 -9.87208 -9.54467 -9.31395 -8.03960 -5.38407 -0.56645 0.42128 0.80038 1.15378 1.37715 1.42749 1.50345 2.03479 2.10901 2.48486 3.11163 3.26795 3.46834 3.70597 3.90373 3.94206 4.00040 4.06757 4.07004 4.21798 4.32838 4.37624 4.38675 4.49188 4.55455 4.56804 4.59177 4.63204 4.73382 4.77386 4.86900 4.87834 4.90647 4.97106 5.00839 5.09233 5.17466 5.24222 5.28336 5.31317 5.39587 5.49343 5.53165 5.73744 6.20259 6.20284 6.39375 7.06744 7.06857 7.82769 8.03775 9.17713 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.002072 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.854742 B =13513.164499 C =15169.336902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.121 3.879 4 C -0.139 4.139 5 C -0.203 4.203 6 S 0.262 5.738 7 C -0.300 4.300 8 C 0.590 3.410 9 O -0.573 6.573 10 N -0.709 5.709 11 C 0.141 3.859 12 H 0.070 0.930 13 C -0.157 4.157 14 C -0.116 4.116 15 C -0.110 4.110 16 C -0.115 4.115 17 C 0.149 3.851 18 N -0.760 5.760 19 C -0.242 4.242 20 H 0.050 0.950 21 C -0.069 4.069 22 N -0.985 5.985 23 Si 0.964 3.036 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.249 1.249 27 C -0.046 4.046 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.197 0.803 34 H 0.408 0.592 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.020 0.980 45 H 0.014 0.986 46 H 0.368 0.632 47 H 0.259 0.741 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.800 29.634 -0.638 35.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.043 3.957 4 C -0.152 4.152 5 C -0.342 4.342 6 S 0.531 5.469 7 C -0.421 4.421 8 C 0.377 3.623 9 O -0.455 6.455 10 N -0.360 5.360 11 C 0.038 3.962 12 H 0.088 0.912 13 C -0.215 4.215 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.406 5.406 19 C -0.373 4.373 20 H 0.068 0.932 21 C -0.260 4.260 22 N -0.636 5.636 23 Si 0.790 3.210 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.173 1.173 27 C -0.080 4.080 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.214 0.786 34 H 0.244 0.756 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.038 0.962 45 H 0.032 0.968 46 H 0.201 0.799 47 H 0.068 0.932 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.662 29.181 -0.531 34.642 hybrid contribution -0.756 -0.153 -0.386 0.862 sum -19.418 29.028 -0.917 34.936 Atomic orbital electron populations 1.22930 0.79259 1.03708 1.01192 1.87944 1.21542 1.28503 1.95656 1.21118 0.87267 0.84841 1.02506 1.18564 0.96955 1.08037 0.91663 1.25636 0.98962 1.05197 1.04381 1.82875 1.03662 1.65113 0.95210 1.24580 0.97909 1.20647 0.98921 1.17166 0.82442 0.75536 0.87116 1.90798 1.82216 1.52513 1.19963 1.45945 1.05217 1.73858 1.11022 1.21095 0.87520 0.97385 0.90249 0.91171 1.22124 1.01542 0.95411 1.02459 1.21872 0.96384 0.94057 1.03103 1.21460 0.97038 0.95570 1.00801 1.21655 0.98770 0.93313 1.01553 1.20852 0.88778 0.92703 0.95390 1.42737 1.10180 1.09419 1.78235 1.19062 0.96704 0.87695 1.33826 0.93153 1.25644 1.02157 0.96872 1.01356 1.69906 1.30889 1.11875 1.50884 0.85285 0.78684 0.78125 0.78933 1.19977 1.22150 1.17322 1.20700 0.91296 0.95809 1.00219 0.89148 0.92445 0.93050 0.90061 0.91364 0.78563 0.75590 0.90903 0.90018 0.93981 0.88729 0.89332 0.92009 0.92678 0.91455 0.90790 0.96169 0.96788 0.79869 0.93244 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.33 10.69 -148.98 -1.59 -8.93 16 3 C 0.12 1.59 6.18 71.24 0.44 2.03 16 4 C -0.14 -2.28 5.41 -21.05 -0.11 -2.39 16 5 C -0.20 -2.65 10.67 66.81 0.71 -1.94 16 6 S 0.26 3.55 22.16 -56.49 -1.25 2.30 16 7 C -0.30 -6.16 6.45 24.08 0.16 -6.00 16 8 C 0.59 14.25 7.75 86.42 0.67 14.92 16 9 O -0.57 -18.20 16.50 -4.36 -0.07 -18.28 16 10 N -0.71 -13.10 4.53 -446.58 -2.02 -15.12 16 11 C 0.14 2.52 2.57 44.99 0.12 2.64 16 12 H 0.07 1.59 7.58 -2.38 -0.02 1.58 16 13 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 14 C -0.12 -1.79 4.75 30.59 0.15 -1.64 16 15 C -0.11 -2.38 5.10 30.59 0.16 -2.22 16 16 C -0.12 -3.09 5.33 30.59 0.16 -2.93 16 17 C 0.15 5.77 6.26 86.38 0.54 6.31 16 18 N -0.76 -36.47 5.41 -343.46 -1.86 -38.33 16 19 C -0.24 -14.33 10.47 84.03 0.88 -13.45 16 20 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 22 N -0.99 -64.40 13.97 21.65 0.30 -64.10 16 23 Si 0.96 45.62 27.73 68.60 1.90 47.52 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 27 C -0.05 -0.95 9.80 21.72 0.21 -0.74 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 0.68 8.12 -2.38 -0.02 0.66 16 32 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.41 5.71 7.72 -92.71 -0.72 5.00 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 46 H 0.37 16.40 5.53 -92.71 -0.51 15.89 16 47 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 48 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -79.88 411.61 1.55 -78.33 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.33 Total: 25.91 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 6.48 Total: -9.31 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -3.58 Total: -117.55 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -1.66 Total: -27.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.25 Total: 2.30 kcal Total: -79.88 1.55 -78.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171683395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.396 kcal (2) G-P(sol) polarization free energy of solvation -79.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds