Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99992 * 2 1 4 4 C 1.50700 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.37476 * 123.35425 * 0.02562 * 4 3 2 6 6 C 1.33815 * 115.10504 * 179.97438 * 5 4 3 7 7 S 1.70618 * 110.95153 * 359.97438 * 6 5 4 8 8 C 1.36647 * 123.35477 * 179.97438 * 4 3 2 9 9 C 1.46590 * 125.45326 * 359.97438 * 8 4 3 10 10 O 1.21700 * 120.00093 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99628 * 180.02562 * 9 8 4 12 12 C 1.46504 * 119.99680 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46967 * 324.99437 * 12 11 9 14 14 C 1.52996 * 109.47254 * 84.99802 * 12 11 9 15 15 C 1.52996 * 109.46641 * 204.99904 * 12 11 9 16 16 C 1.53005 * 109.47502 * 65.00036 * 15 12 11 17 17 C 1.52991 * 109.47492 * 179.97438 * 16 15 12 18 18 C 1.52996 * 109.47462 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47528 * 180.02562 * 18 17 16 20 20 C 1.36935 * 120.00239 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99715 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00214 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00396 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47095 * 90.00215 * 24 22 20 26 26 H 1.48504 * 109.47365 * 209.99874 * 24 22 20 27 27 H 1.48500 * 109.47684 * 330.00091 * 24 22 20 28 28 H 1.09001 * 109.47369 * 299.99803 * 1 2 3 29 29 H 1.09003 * 109.47133 * 60.00152 * 1 2 3 30 30 H 1.09007 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47070 * 59.99940 * 3 2 1 32 32 H 1.08996 * 109.46893 * 299.99359 * 3 2 1 33 33 H 1.08005 * 122.44361 * 0.02562 * 5 4 3 34 34 H 1.07997 * 124.52314 * 180.26255 * 6 5 4 35 35 H 0.96996 * 119.99903 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46883 * 179.97438 * 14 12 11 37 37 H 1.09003 * 109.47139 * 299.99788 * 14 12 11 38 38 H 1.08993 * 109.47011 * 60.00058 * 14 12 11 39 39 H 1.09008 * 109.46942 * 184.99412 * 15 12 11 40 40 H 1.08993 * 109.47280 * 304.99477 * 15 12 11 41 41 H 1.09003 * 109.46503 * 300.00109 * 16 15 12 42 42 H 1.09002 * 109.47040 * 59.99466 * 16 15 12 43 43 H 1.09004 * 109.47379 * 300.00268 * 17 16 15 44 44 H 1.09002 * 109.47136 * 59.99865 * 17 16 15 45 45 H 1.09009 * 109.47138 * 300.00057 * 18 17 16 46 46 H 1.09002 * 109.46969 * 59.99868 * 18 17 16 47 47 H 0.96997 * 119.99363 * 359.97438 * 19 18 17 48 48 H 0.96998 * 120.00374 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1753 -0.0180 0.0006 6 6 5.5107 0.0689 0.0007 7 16 6.0161 1.6985 0.0001 8 6 4.3516 2.2650 0.0003 9 6 3.9313 3.6693 -0.0013 10 8 2.7471 3.9501 -0.0019 11 7 4.8563 4.6495 -0.0020 12 6 4.4362 6.0530 -0.0030 13 1 3.5257 6.1593 -0.5926 14 6 4.1696 6.5066 1.4336 15 6 5.5425 6.9159 -0.6133 16 6 5.7232 6.5464 -2.0870 17 6 6.8290 7.4097 -2.6974 18 6 7.0101 7.0398 -4.1709 19 7 8.0694 7.8660 -4.7553 20 6 8.4106 7.7112 -6.0724 21 1 7.8990 6.9797 -6.6803 22 6 9.4139 8.4945 -6.6262 23 7 9.7415 8.3460 -7.8923 24 14 10.2982 9.7602 -5.5749 25 1 11.4830 9.1326 -4.9364 26 1 10.7380 10.8928 -6.4288 27 1 9.3769 10.2615 -4.5237 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.6561 -0.9650 -0.0003 34 1 6.1792 -0.7793 -0.0034 35 1 5.8001 4.4257 -0.0019 36 1 3.8575 7.5510 1.4328 37 1 3.3814 5.8918 1.8684 38 1 5.0801 6.4004 2.0231 39 1 5.2684 7.9680 -0.5335 40 1 6.4759 6.7421 -0.0780 41 1 5.9972 5.4944 -2.1668 42 1 4.7897 6.7203 -2.6223 43 1 6.5546 8.4616 -2.6176 44 1 7.7626 7.2362 -2.1622 45 1 7.2848 5.9879 -4.2504 46 1 6.0766 7.2130 -4.7064 47 1 8.5291 8.5228 -4.2091 48 1 10.4423 8.8936 -8.2794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176144244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -54.585566 kcal Electronic energy + Delta-G solvation = -26488.128968 eV Core-core repulsion = 22669.719479 eV Total energy + Delta-G solvation = -3818.409490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.34706 -38.90482 -37.35901 -36.85915 -35.43187 -33.36205 -31.89676 -30.94543 -30.45777 -28.30264 -27.78510 -26.01636 -24.33350 -23.86262 -22.46568 -21.51876 -20.94841 -20.80296 -19.18640 -18.73474 -17.49107 -16.79405 -16.63291 -16.27472 -15.83718 -15.67243 -15.31092 -15.03374 -14.62548 -14.45250 -14.17008 -14.03060 -13.70016 -13.59215 -13.21315 -13.08806 -12.80042 -12.71959 -12.53341 -12.51274 -12.32477 -11.93407 -11.69490 -11.66632 -11.48170 -11.30525 -11.19247 -10.87854 -10.85959 -10.42353 -10.35521 -10.22355 -10.16455 -10.09600 -9.57696 -9.44410 -9.08221 -8.87497 -8.78218 -7.20740 -5.75075 -3.10281 0.14229 1.10930 1.51008 2.05663 2.83654 2.89182 3.37912 3.39688 3.40514 3.45553 4.37714 4.49154 4.57127 4.60454 4.79815 4.86500 4.88921 4.99019 5.00333 5.04778 5.16818 5.21995 5.25966 5.28813 5.31648 5.32737 5.47783 5.53653 5.56102 5.64191 5.64530 5.76602 5.85132 5.88043 5.93912 6.00665 6.06559 6.11166 6.17999 6.27643 6.36006 6.78627 6.79417 6.82301 7.16431 7.86758 8.02019 8.44232 9.23715 9.96163 10.16525 11.43492 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.002068 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.948381 B =13539.155348 C =14202.361690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.124 3.876 4 C -0.020 4.020 5 C -0.130 4.130 6 C -0.228 4.228 7 S 0.210 5.790 8 C -0.274 4.274 9 C 0.594 3.406 10 O -0.532 6.532 11 N -0.718 5.718 12 C 0.142 3.858 13 H 0.092 0.908 14 C -0.163 4.163 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.156 3.844 19 N -0.758 5.758 20 C -0.243 4.243 21 H 0.089 0.911 22 C 0.001 3.999 23 N -0.935 5.935 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.171 0.829 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.593 -15.931 24.545 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C 0.046 3.954 4 C -0.036 4.036 5 C -0.161 4.161 6 C -0.366 4.366 7 S 0.478 5.522 8 C -0.395 4.395 9 C 0.380 3.620 10 O -0.410 6.410 11 N -0.369 5.369 12 C 0.038 3.962 13 H 0.110 0.890 14 C -0.222 4.222 15 C -0.166 4.166 16 C -0.154 4.154 17 C -0.167 4.167 18 C 0.029 3.971 19 N -0.404 5.404 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.194 4.194 23 N -0.583 5.583 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.189 0.811 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.861 -15.241 24.299 31.856 hybrid contribution -0.253 0.151 0.557 0.630 sum -14.114 -15.090 24.856 32.322 Atomic orbital electron populations 1.22736 0.80424 1.02770 1.00358 1.87792 1.20095 1.27780 1.95641 1.21004 0.87787 0.84259 1.02349 1.19211 0.95630 0.91424 0.97375 1.19839 0.92736 0.99489 1.04007 1.25328 1.00108 1.02368 1.08807 1.83077 1.03933 0.97485 1.67667 1.24339 0.97757 0.96982 1.20377 1.16877 0.85803 0.83171 0.76133 1.90802 1.16498 1.83337 1.50408 1.45969 1.09284 1.06345 1.75294 1.21090 0.99032 0.79097 0.96949 0.88969 1.22182 1.02033 1.01762 0.96191 1.21957 0.98036 1.00014 0.96586 1.21525 0.99530 1.00108 0.94193 1.21774 0.98127 0.99662 0.97156 1.20632 0.91659 0.94373 0.90449 1.42737 1.42781 1.44670 1.10170 1.19088 1.15254 1.17571 0.85405 0.89278 1.24695 0.99191 0.99649 0.95888 1.69705 1.33811 1.43232 1.11601 0.86512 0.79951 0.81996 0.79859 1.21100 1.21729 1.20371 0.93910 0.93772 0.89493 0.90790 0.90609 0.82975 0.81120 0.76726 0.91352 0.92158 0.92436 0.90010 0.91302 0.91957 0.91695 0.92072 0.92148 0.95710 0.95739 0.80746 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.83 9.62 -35.23 -0.34 -4.16 16 3 C 0.12 1.27 4.91 36.01 0.18 1.45 16 4 C -0.02 -0.21 5.90 -105.47 -0.62 -0.83 16 5 C -0.13 -1.17 9.49 -41.41 -0.39 -1.56 16 6 C -0.23 -1.72 10.92 29.18 0.32 -1.40 16 7 S 0.21 1.63 22.16 -107.50 -2.38 -0.75 16 8 C -0.27 -2.82 6.45 -36.79 -0.24 -3.05 16 9 C 0.59 6.74 7.74 -12.89 -0.10 6.64 16 10 O -0.53 -7.32 14.53 5.19 0.08 -7.25 16 11 N -0.72 -6.72 4.53 -55.14 -0.25 -6.97 16 12 C 0.14 1.30 2.57 -67.93 -0.17 1.13 16 13 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 14 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 15 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 16 C -0.12 -1.33 5.10 -26.73 -0.14 -1.46 16 17 C -0.13 -1.88 5.33 -26.74 -0.14 -2.03 16 18 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 19 N -0.76 -18.52 5.41 -59.90 -0.32 -18.84 16 20 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 22 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 23 N -0.94 -29.83 13.97 55.49 0.78 -29.06 16 24 Si 0.89 22.36 27.73 -169.99 -4.71 17.64 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.57 6.52 56.52 0.37 -6.21 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 32 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 33 H 0.15 1.26 7.47 -52.48 -0.39 0.87 16 34 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.40 3.12 7.72 -40.82 -0.31 2.80 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.36 8.49 5.53 -40.82 -0.23 8.27 16 48 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 406.56 15.07 6.13 6.13 Total: -1.00 -34.48 406.56 -9.33 -43.82 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.05 Total: 5.74 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.25 Total: -6.29 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.20 Total: -54.87 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.26 Total: -11.41 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.64 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.38 Total: -0.75 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.48 -9.33 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176144244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.770 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds