Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99992 * 2 1 4 4 C 1.50700 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.37476 * 123.35425 * 0.02562 * 4 3 2 6 6 C 1.33815 * 115.10504 * 179.97438 * 5 4 3 7 7 S 1.70618 * 110.95153 * 359.97438 * 6 5 4 8 8 C 1.36647 * 123.35477 * 179.97438 * 4 3 2 9 9 C 1.46590 * 125.45326 * 359.97438 * 8 4 3 10 10 O 1.21700 * 120.00093 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99628 * 180.02562 * 9 8 4 12 12 C 1.46504 * 119.99680 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46967 * 324.99437 * 12 11 9 14 14 C 1.52996 * 109.47254 * 84.99802 * 12 11 9 15 15 C 1.52996 * 109.46641 * 204.99904 * 12 11 9 16 16 C 1.53005 * 109.47502 * 65.00036 * 15 12 11 17 17 C 1.52991 * 109.47492 * 179.97438 * 16 15 12 18 18 C 1.52996 * 109.47462 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47528 * 180.02562 * 18 17 16 20 20 C 1.36935 * 120.00239 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99715 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00214 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00396 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47095 * 90.00215 * 24 22 20 26 26 H 1.48504 * 109.47365 * 209.99874 * 24 22 20 27 27 H 1.48500 * 109.47684 * 330.00091 * 24 22 20 28 28 H 1.09001 * 109.47369 * 299.99803 * 1 2 3 29 29 H 1.09003 * 109.47133 * 60.00152 * 1 2 3 30 30 H 1.09007 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47070 * 59.99940 * 3 2 1 32 32 H 1.08996 * 109.46893 * 299.99359 * 3 2 1 33 33 H 1.08005 * 122.44361 * 0.02562 * 5 4 3 34 34 H 1.07997 * 124.52314 * 180.26255 * 6 5 4 35 35 H 0.96996 * 119.99903 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.46883 * 179.97438 * 14 12 11 37 37 H 1.09003 * 109.47139 * 299.99788 * 14 12 11 38 38 H 1.08993 * 109.47011 * 60.00058 * 14 12 11 39 39 H 1.09008 * 109.46942 * 184.99412 * 15 12 11 40 40 H 1.08993 * 109.47280 * 304.99477 * 15 12 11 41 41 H 1.09003 * 109.46503 * 300.00109 * 16 15 12 42 42 H 1.09002 * 109.47040 * 59.99466 * 16 15 12 43 43 H 1.09004 * 109.47379 * 300.00268 * 17 16 15 44 44 H 1.09002 * 109.47136 * 59.99865 * 17 16 15 45 45 H 1.09009 * 109.47138 * 300.00057 * 18 17 16 46 46 H 1.09002 * 109.46969 * 59.99868 * 18 17 16 47 47 H 0.96997 * 119.99363 * 359.97438 * 19 18 17 48 48 H 0.96998 * 120.00374 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1753 -0.0180 0.0006 6 6 5.5107 0.0689 0.0007 7 16 6.0161 1.6985 0.0001 8 6 4.3516 2.2650 0.0003 9 6 3.9313 3.6693 -0.0013 10 8 2.7471 3.9501 -0.0019 11 7 4.8563 4.6495 -0.0020 12 6 4.4362 6.0530 -0.0030 13 1 3.5257 6.1593 -0.5926 14 6 4.1696 6.5066 1.4336 15 6 5.5425 6.9159 -0.6133 16 6 5.7232 6.5464 -2.0870 17 6 6.8290 7.4097 -2.6974 18 6 7.0101 7.0398 -4.1709 19 7 8.0694 7.8660 -4.7553 20 6 8.4106 7.7112 -6.0724 21 1 7.8990 6.9797 -6.6803 22 6 9.4139 8.4945 -6.6262 23 7 9.7415 8.3460 -7.8923 24 14 10.2982 9.7602 -5.5749 25 1 11.4830 9.1326 -4.9364 26 1 10.7380 10.8928 -6.4288 27 1 9.3769 10.2615 -4.5237 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.6561 -0.9650 -0.0003 34 1 6.1792 -0.7793 -0.0034 35 1 5.8001 4.4257 -0.0019 36 1 3.8575 7.5510 1.4328 37 1 3.3814 5.8918 1.8684 38 1 5.0801 6.4004 2.0231 39 1 5.2684 7.9680 -0.5335 40 1 6.4759 6.7421 -0.0780 41 1 5.9972 5.4944 -2.1668 42 1 4.7897 6.7203 -2.6223 43 1 6.5546 8.4616 -2.6176 44 1 7.7626 7.2362 -2.1622 45 1 7.2848 5.9879 -4.2504 46 1 6.0766 7.2130 -4.7064 47 1 8.5291 8.5228 -4.2091 48 1 10.4423 8.8936 -8.2794 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176144244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = -77.432068 kcal Electronic energy + Delta-G solvation = -26489.119667 eV Core-core repulsion = 22669.719479 eV Total energy + Delta-G solvation = -3819.400189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15220 -39.62984 -38.17091 -37.77729 -36.90895 -34.81147 -33.33439 -32.24038 -31.29872 -29.11955 -28.93352 -26.67205 -25.78273 -24.64522 -23.66816 -22.78789 -22.13271 -21.67309 -19.95879 -19.59263 -19.42926 -17.50554 -17.43007 -17.01083 -16.63832 -16.51613 -16.46259 -16.25743 -15.97808 -15.75639 -15.07420 -14.89533 -14.84101 -14.63951 -14.44055 -14.18482 -14.10604 -13.54285 -13.45096 -13.20645 -13.16515 -12.98238 -12.95579 -12.92500 -12.46087 -12.32846 -12.28969 -12.05769 -11.98605 -11.88904 -11.79038 -11.50870 -11.45336 -11.08453 -10.97364 -10.85911 -10.25897 -9.77513 -9.42959 -9.31381 -8.04024 -5.38408 -0.56939 0.44560 0.86186 1.34615 1.37671 1.42554 1.50163 2.06439 2.09889 2.48352 2.72585 3.26793 3.47390 3.75476 3.84448 3.92757 4.01397 4.07452 4.20207 4.32739 4.33829 4.35455 4.38384 4.44663 4.54136 4.54903 4.57399 4.63520 4.74393 4.81397 4.87197 4.90534 4.97264 4.98473 5.01191 5.09076 5.20265 5.24416 5.27310 5.31945 5.40344 5.49687 5.54084 5.73712 6.10631 6.20182 6.40946 7.06855 7.07435 7.82882 8.03642 9.17595 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.002068 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.948381 B =13539.155348 C =14202.361690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.130 3.870 4 C -0.036 4.036 5 C -0.146 4.146 6 C -0.219 4.219 7 S 0.252 5.748 8 C -0.301 4.301 9 C 0.589 3.411 10 O -0.565 6.565 11 N -0.710 5.710 12 C 0.143 3.857 13 H 0.072 0.928 14 C -0.157 4.157 15 C -0.117 4.117 16 C -0.110 4.110 17 C -0.116 4.116 18 C 0.149 3.851 19 N -0.760 5.760 20 C -0.241 4.241 21 H 0.051 0.949 22 C -0.069 4.069 23 N -0.985 5.985 24 Si 0.963 3.037 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.249 1.249 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.156 0.844 34 H 0.200 0.800 35 H 0.407 0.593 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.014 0.986 47 H 0.368 0.632 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 -15.546 27.244 34.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.052 3.948 4 C -0.053 4.053 5 C -0.177 4.177 6 C -0.357 4.357 7 S 0.521 5.479 8 C -0.421 4.421 9 C 0.376 3.624 10 O -0.447 6.447 11 N -0.361 5.361 12 C 0.039 3.961 13 H 0.091 0.909 14 C -0.215 4.215 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.153 4.153 18 C 0.023 3.977 19 N -0.406 5.406 20 C -0.372 4.372 21 H 0.069 0.931 22 C -0.260 4.260 23 N -0.635 5.635 24 Si 0.789 3.211 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.173 1.173 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.174 0.826 34 H 0.217 0.783 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.201 0.799 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.613 -14.869 27.042 33.338 hybrid contribution -0.695 -0.091 -0.355 0.786 sum -13.308 -14.960 26.688 33.364 Atomic orbital electron populations 1.22946 0.79072 1.04189 1.00767 1.87771 1.21657 1.27381 1.95655 1.20836 0.88342 0.84360 1.01233 1.19404 0.95696 0.92275 0.97883 1.19888 0.93423 0.99113 1.05227 1.25722 0.99978 1.03352 1.06602 1.82867 1.01537 0.97102 1.66394 1.24388 0.99598 0.96460 1.21674 1.17104 0.85594 0.83946 0.75709 1.90776 1.17878 1.83948 1.52089 1.45937 1.09494 1.06214 1.74460 1.21074 0.98462 0.79019 0.97519 0.90948 1.22121 1.02088 1.02100 0.95227 1.21872 0.98649 1.00473 0.94485 1.21453 0.97954 0.99555 0.95827 1.21657 0.99792 1.00460 0.93425 1.20854 0.89683 0.93485 0.93667 1.42744 1.43844 1.45488 1.08528 1.19059 1.14633 1.16339 0.87212 0.93109 1.25636 1.00479 1.02512 0.97388 1.69903 1.34832 1.44819 1.13983 0.85294 0.78947 0.78460 0.78379 1.20007 1.22170 1.17331 0.93282 0.93617 0.87569 0.91613 0.92091 0.82620 0.78295 0.75670 0.90092 0.93885 0.91105 0.88804 0.89483 0.91969 0.92602 0.91490 0.90886 0.96149 0.96745 0.79891 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.05 9.62 -148.98 -1.43 -9.49 16 3 C 0.13 2.84 4.91 71.24 0.35 3.19 16 4 C -0.04 -0.76 5.90 -20.42 -0.12 -0.88 16 5 C -0.15 -2.52 9.49 21.08 0.20 -2.32 16 6 C -0.22 -2.84 10.92 66.81 0.73 -2.11 16 7 S 0.25 3.43 22.16 -56.49 -1.25 2.18 16 8 C -0.30 -6.11 6.45 24.08 0.16 -5.95 16 9 C 0.59 13.45 7.74 86.42 0.67 14.12 16 10 O -0.57 -16.26 14.53 -4.35 -0.06 -16.33 16 11 N -0.71 -12.51 4.53 -446.59 -2.02 -14.53 16 12 C 0.14 2.41 2.57 44.99 0.12 2.53 16 13 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 14 C -0.16 -2.27 9.48 71.98 0.68 -1.59 16 15 C -0.12 -1.73 4.75 30.59 0.15 -1.59 16 16 C -0.11 -2.29 5.10 30.59 0.16 -2.13 16 17 C -0.12 -3.05 5.33 30.59 0.16 -2.89 16 18 C 0.15 5.70 6.26 86.38 0.54 6.24 16 19 N -0.76 -36.21 5.41 -343.44 -1.86 -38.07 16 20 C -0.24 -14.22 10.47 84.03 0.88 -13.34 16 21 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 22 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 23 N -0.99 -64.12 13.97 21.65 0.30 -63.82 16 24 Si 0.96 45.43 27.73 68.60 1.90 47.33 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 1.49 7.84 -2.39 -0.02 1.47 16 32 H 0.06 1.46 7.83 -2.39 -0.02 1.44 16 33 H 0.16 2.49 7.47 -2.91 -0.02 2.46 16 34 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.41 5.54 7.72 -92.71 -0.72 4.83 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.37 16.29 5.53 -92.71 -0.51 15.78 16 48 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -76.53 406.56 1.63 -74.90 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.33 Total: 26.59 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 6.38 Total: -8.77 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -3.58 Total: -116.41 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.50 Total: -25.81 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.25 Total: 2.18 kcal Total: -76.53 1.63 -74.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176144244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.532 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds