Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46658 * 2 1 4 4 N 1.46494 * 109.47396 * 239.99458 * 2 1 3 5 5 C 1.34780 * 119.99998 * 85.00135 * 4 2 1 6 6 O 1.21286 * 119.99666 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00098 * 179.97438 * 5 4 2 8 8 S 1.80997 * 109.47278 * 179.97438 * 7 5 4 9 9 C 1.76198 * 100.00214 * 180.02562 * 8 7 5 10 10 H 1.07994 * 120.00155 * 0.02562 * 9 8 7 11 11 C 1.38801 * 119.99962 * 180.02562 * 9 8 7 12 12 N 1.31633 * 120.00021 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00042 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47210 * 59.99995 * 13 11 9 15 15 H 1.48501 * 109.47402 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47268 * 300.00012 * 13 11 9 17 17 C 1.53006 * 109.47015 * 119.99345 * 2 1 3 18 18 C 1.53494 * 114.20702 * 300.00413 * 17 2 1 19 19 N 1.47067 * 87.98834 * 220.34556 * 18 17 2 20 20 C 1.34773 * 136.06239 * 207.08903 * 19 18 17 21 21 O 1.21281 * 119.99619 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00098 * 179.97438 * 20 19 18 23 23 H 1.08997 * 115.56399 * 325.68565 * 22 20 19 24 24 C 1.53069 * 117.49354 * 111.40043 * 22 20 19 25 25 C 1.52994 * 59.98565 * 107.48173 * 24 22 20 26 26 C 1.53006 * 117.49618 * 107.50105 * 25 24 22 27 27 C 1.53001 * 117.50191 * 252.49542 * 25 24 22 28 28 C 1.47074 * 87.88343 * 27.34170 * 19 18 17 29 29 H 1.08994 * 109.47084 * 60.00916 * 1 2 3 30 30 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47536 * 300.00451 * 1 2 3 32 32 H 0.97002 * 120.00123 * 264.99513 * 4 2 1 33 33 H 1.08996 * 109.47583 * 299.99767 * 7 5 4 34 34 H 1.09003 * 109.47210 * 60.00460 * 7 5 4 35 35 H 0.97001 * 119.99890 * 180.02562 * 12 11 9 36 36 H 1.09000 * 113.27930 * 73.07009 * 17 2 1 37 37 H 1.08997 * 113.47146 * 105.56244 * 18 17 2 38 38 H 1.09003 * 113.52069 * 335.13349 * 18 17 2 39 39 H 1.09001 * 117.49351 * 359.97438 * 24 22 20 40 40 H 1.09000 * 117.53259 * 214.95213 * 24 22 20 41 41 H 1.09001 * 109.47002 * 231.24993 * 26 25 24 42 42 H 1.08993 * 109.46955 * 351.25430 * 26 25 24 43 43 H 1.09000 * 109.47050 * 111.25259 * 26 25 24 44 44 H 1.09003 * 109.47208 * 248.75020 * 27 25 24 45 45 H 1.09007 * 109.46774 * 8.74542 * 27 25 24 46 46 H 1.08995 * 109.47098 * 128.74788 * 27 25 24 47 47 H 1.08998 * 113.46656 * 87.43334 * 28 19 18 48 48 H 1.08999 * 113.46924 * 217.88014 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6501 -0.7287 -3.5873 8 16 2.7102 0.4339 -4.9731 9 6 3.3135 -0.6313 -6.2403 10 1 3.5229 -1.6677 -6.0203 11 6 3.5195 -0.1385 -7.5215 12 7 3.2647 1.1248 -7.7896 13 14 4.1585 -1.2680 -8.8651 14 1 3.2070 -2.3913 -9.0615 15 1 4.2907 -0.5048 -10.1321 16 1 5.4849 -1.8062 -8.4701 17 6 2.0400 -0.7211 1.2494 18 6 1.5897 -0.0844 2.5715 19 7 2.9388 -0.3442 3.0961 20 6 3.4837 -0.5565 4.3104 21 8 2.7809 -0.5558 5.2988 22 6 4.9661 -0.7946 4.4399 23 1 5.4284 -1.3404 3.6174 24 6 5.7992 0.2918 5.1244 25 6 5.5237 -1.0293 5.8452 26 6 6.6877 -2.0120 5.9884 27 6 4.5336 -1.0047 7.0114 28 6 3.4329 -0.2640 1.7131 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2492 -1.6318 -1.1524 33 1 3.6494 -1.1205 -3.3977 34 1 1.9778 -1.5510 -3.8324 35 1 3.4084 1.4690 -8.6850 36 1 1.9087 -1.8024 1.2065 37 1 0.8094 -0.6491 3.0817 38 1 1.3543 0.9764 2.4854 39 1 5.2748 1.1786 5.4804 40 1 6.8097 0.4611 4.7526 41 1 6.3784 -2.9955 5.6347 42 1 7.5333 -1.6622 5.3964 43 1 6.9804 -2.0782 7.0363 44 1 5.0671 -1.1836 7.9449 45 1 4.0452 -0.0311 7.0529 46 1 3.7831 -1.7819 6.8672 47 1 3.6836 0.7494 1.3999 48 1 4.2228 -0.9818 1.4921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280611404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = -17.674711 kcal Electronic energy + Delta-G solvation = -26488.964199 eV Core-core repulsion = 22672.155284 eV Total energy + Delta-G solvation = -3816.808915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10903 -39.77965 -38.85532 -37.04795 -35.07826 -32.45300 -31.76121 -30.29203 -29.01761 -28.43743 -27.77954 -26.53186 -25.50715 -24.63920 -23.18811 -20.83677 -20.44631 -19.85662 -18.89424 -17.90786 -17.51731 -16.80568 -16.39589 -16.00283 -15.41553 -15.03420 -14.93922 -14.82443 -14.31324 -14.23805 -14.13103 -13.88279 -13.60223 -13.33890 -13.21644 -13.02249 -12.91170 -12.77009 -12.60712 -12.48548 -12.32029 -12.17412 -11.99820 -11.75277 -11.59721 -11.09625 -11.06823 -11.05930 -10.95899 -10.78196 -10.61002 -10.26314 -9.85449 -9.79493 -9.44240 -9.09381 -9.06465 -8.95246 -8.27108 -6.52849 -6.24028 -3.94852 2.16400 2.38814 2.96056 3.04027 3.21467 3.25153 3.27876 3.35245 3.58961 3.91111 3.99345 4.18189 4.23725 4.35187 4.40478 4.59468 4.66552 4.70563 4.80717 4.97903 5.06646 5.11091 5.12801 5.14710 5.17275 5.25468 5.28312 5.29824 5.32251 5.37107 5.50968 5.55347 5.60213 5.64183 5.64557 5.69565 5.72073 5.83379 5.85079 5.95071 6.10332 6.14976 6.17067 6.58835 7.36184 7.56775 7.65064 7.85616 8.32459 8.56327 9.21248 10.83266 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.001852 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.879941 B =15117.389720 C =16155.183955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.157 3.843 3 H 0.093 0.907 4 N -0.734 5.734 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.132 4.132 18 C 0.116 3.884 19 N -0.646 5.646 20 C 0.573 3.427 21 O -0.535 6.535 22 C -0.184 4.184 23 H 0.121 0.879 24 C -0.145 4.145 25 C -0.094 4.094 26 C -0.117 4.117 27 C -0.103 4.103 28 C 0.106 3.894 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 -6.607 26.309 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 H 0.111 0.889 4 N -0.389 5.389 5 C 0.320 3.680 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.152 4.152 18 C -0.007 4.007 19 N -0.381 5.381 20 C 0.364 3.636 21 O -0.412 6.412 22 C -0.205 4.205 23 H 0.139 0.861 24 C -0.183 4.183 25 C -0.095 4.095 26 C -0.174 4.174 27 C -0.160 4.160 28 C -0.017 4.017 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.855 -4.518 26.841 27.282 hybrid contribution 0.879 -2.533 -1.087 2.893 sum 2.734 -7.051 25.755 26.842 Atomic orbital electron populations 1.22185 0.94881 1.02338 1.02900 1.20757 0.94382 0.97202 0.82568 0.88923 1.46064 1.69498 1.13925 1.09388 1.20304 0.76755 0.87211 0.83710 1.90707 1.48203 1.15768 1.84350 1.23536 1.03653 1.04899 0.98397 1.85394 1.86324 1.12844 0.98748 1.22823 1.51119 0.98139 0.96413 0.90986 1.24990 0.95082 0.95536 0.97950 1.70006 1.45424 1.13207 1.21619 0.86230 0.79308 0.80024 0.79971 1.19946 1.20807 1.19942 1.23330 0.96394 1.01521 0.93910 1.22929 0.86156 1.01188 0.90439 1.49568 1.11589 1.70998 1.05965 1.19232 0.88377 0.75558 0.80482 1.90713 1.63096 1.51933 1.35480 1.22278 0.92059 1.07153 0.99029 0.86095 1.23243 1.00237 0.92781 1.02010 1.21625 0.98442 0.97734 0.91672 1.21407 0.95506 0.98023 1.02471 1.21358 0.96906 1.03514 0.94212 1.23206 0.97331 1.02360 0.78837 0.91328 0.92354 0.91775 0.76830 0.89243 0.89240 0.92113 0.87128 0.90020 0.89264 0.88278 0.87667 0.91935 0.92166 0.91525 0.93147 0.91765 0.91455 0.89010 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.29 37.16 0.35 -1.19 16 2 C 0.16 1.48 2.47 -67.93 -0.17 1.31 16 3 H 0.09 1.04 7.32 -51.93 -0.38 0.66 16 4 N -0.73 -8.26 5.08 -53.81 -0.27 -8.53 16 5 C 0.53 9.04 7.81 -10.99 -0.09 8.95 16 6 O -0.52 -10.85 15.53 5.55 0.09 -10.77 16 7 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 8 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 9 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 10 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 13 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 C -0.13 -0.91 3.67 -89.97 -0.33 -1.24 16 18 C 0.12 0.90 7.26 -8.50 -0.06 0.84 16 19 N -0.65 -5.85 3.69 -185.03 -0.68 -6.53 16 20 C 0.57 6.17 7.84 -10.99 -0.09 6.08 16 21 O -0.54 -7.32 13.88 5.56 0.08 -7.24 16 22 C -0.18 -1.53 5.74 -91.74 -0.53 -2.06 16 23 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.15 -1.06 9.53 -26.70 -0.25 -1.31 16 25 C -0.09 -0.73 2.70 -154.51 -0.42 -1.15 16 26 C -0.12 -0.68 9.85 37.16 0.37 -0.32 16 27 C -0.10 -0.92 8.09 37.16 0.30 -0.62 16 28 C 0.11 0.76 8.00 -8.36 -0.07 0.70 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 7.48 -51.93 -0.39 0.10 16 32 H 0.40 3.35 8.60 -40.82 -0.35 3.00 16 33 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 34 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 40 H 0.11 0.59 8.05 -51.93 -0.42 0.18 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 43 H 0.07 0.34 7.93 -51.93 -0.41 -0.07 16 44 H 0.05 0.36 7.93 -51.93 -0.41 -0.05 16 45 H 0.06 0.66 7.01 -51.93 -0.36 0.30 16 46 H 0.07 0.70 7.26 -51.93 -0.38 0.32 16 47 H 0.09 0.68 7.93 -51.93 -0.41 0.27 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -35.26 409.20 -9.80 -45.06 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.11 Total: 0.02 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.57 Total: -5.38 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.22 Total: -40.08 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.16 Total: -18.01 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.26 -9.80 -45.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280611404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.388 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds