Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46658 * 2 1 4 4 N 1.46494 * 109.47396 * 239.99458 * 2 1 3 5 5 C 1.34780 * 119.99998 * 85.00135 * 4 2 1 6 6 O 1.21286 * 119.99666 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00098 * 179.97438 * 5 4 2 8 8 S 1.80997 * 109.47278 * 179.97438 * 7 5 4 9 9 C 1.76198 * 100.00214 * 180.02562 * 8 7 5 10 10 H 1.07994 * 120.00155 * 0.02562 * 9 8 7 11 11 C 1.38801 * 119.99962 * 180.02562 * 9 8 7 12 12 N 1.31633 * 120.00021 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00042 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47210 * 59.99995 * 13 11 9 15 15 H 1.48501 * 109.47402 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47268 * 300.00012 * 13 11 9 17 17 C 1.53006 * 109.47015 * 119.99345 * 2 1 3 18 18 C 1.53494 * 114.20702 * 300.00413 * 17 2 1 19 19 N 1.47067 * 87.98834 * 220.34556 * 18 17 2 20 20 C 1.34773 * 136.06239 * 207.08903 * 19 18 17 21 21 O 1.21281 * 119.99619 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00098 * 179.97438 * 20 19 18 23 23 H 1.08997 * 115.56399 * 325.68565 * 22 20 19 24 24 C 1.53069 * 117.49354 * 111.40043 * 22 20 19 25 25 C 1.52994 * 59.98565 * 107.48173 * 24 22 20 26 26 C 1.53006 * 117.49618 * 107.50105 * 25 24 22 27 27 C 1.53001 * 117.50191 * 252.49542 * 25 24 22 28 28 C 1.47074 * 87.88343 * 27.34170 * 19 18 17 29 29 H 1.08994 * 109.47084 * 60.00916 * 1 2 3 30 30 H 1.09006 * 109.46767 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47536 * 300.00451 * 1 2 3 32 32 H 0.97002 * 120.00123 * 264.99513 * 4 2 1 33 33 H 1.08996 * 109.47583 * 299.99767 * 7 5 4 34 34 H 1.09003 * 109.47210 * 60.00460 * 7 5 4 35 35 H 0.97001 * 119.99890 * 180.02562 * 12 11 9 36 36 H 1.09000 * 113.27930 * 73.07009 * 17 2 1 37 37 H 1.08997 * 113.47146 * 105.56244 * 18 17 2 38 38 H 1.09003 * 113.52069 * 335.13349 * 18 17 2 39 39 H 1.09001 * 117.49351 * 359.97438 * 24 22 20 40 40 H 1.09000 * 117.53259 * 214.95213 * 24 22 20 41 41 H 1.09001 * 109.47002 * 231.24993 * 26 25 24 42 42 H 1.08993 * 109.46955 * 351.25430 * 26 25 24 43 43 H 1.09000 * 109.47050 * 111.25259 * 26 25 24 44 44 H 1.09003 * 109.47208 * 248.75020 * 27 25 24 45 45 H 1.09007 * 109.46774 * 8.74542 * 27 25 24 46 46 H 1.08995 * 109.47098 * 128.74788 * 27 25 24 47 47 H 1.08998 * 113.46656 * 87.43334 * 28 19 18 48 48 H 1.08999 * 113.46924 * 217.88014 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6501 -0.7287 -3.5873 8 16 2.7102 0.4339 -4.9731 9 6 3.3135 -0.6313 -6.2403 10 1 3.5229 -1.6677 -6.0203 11 6 3.5195 -0.1385 -7.5215 12 7 3.2647 1.1248 -7.7896 13 14 4.1585 -1.2680 -8.8651 14 1 3.2070 -2.3913 -9.0615 15 1 4.2907 -0.5048 -10.1321 16 1 5.4849 -1.8062 -8.4701 17 6 2.0400 -0.7211 1.2494 18 6 1.5897 -0.0844 2.5715 19 7 2.9388 -0.3442 3.0961 20 6 3.4837 -0.5565 4.3104 21 8 2.7809 -0.5558 5.2988 22 6 4.9661 -0.7946 4.4399 23 1 5.4284 -1.3404 3.6174 24 6 5.7992 0.2918 5.1244 25 6 5.5237 -1.0293 5.8452 26 6 6.6877 -2.0120 5.9884 27 6 4.5336 -1.0047 7.0114 28 6 3.4329 -0.2640 1.7131 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.2492 -1.6318 -1.1524 33 1 3.6494 -1.1205 -3.3977 34 1 1.9778 -1.5510 -3.8324 35 1 3.4084 1.4690 -8.6850 36 1 1.9087 -1.8024 1.2065 37 1 0.8094 -0.6491 3.0817 38 1 1.3543 0.9764 2.4854 39 1 5.2748 1.1786 5.4804 40 1 6.8097 0.4611 4.7526 41 1 6.3784 -2.9955 5.6347 42 1 7.5333 -1.6622 5.3964 43 1 6.9804 -2.0782 7.0363 44 1 5.0671 -1.1836 7.9449 45 1 4.0452 -0.0311 7.0529 46 1 3.7831 -1.7819 6.8672 47 1 3.6836 0.7494 1.3999 48 1 4.2228 -0.9818 1.4921 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280611404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = -40.833630 kcal Electronic energy + Delta-G solvation = -26489.968445 eV Core-core repulsion = 22672.155284 eV Total energy + Delta-G solvation = -3817.813161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84058 -40.73910 -39.84813 -37.80885 -36.14349 -34.55806 -32.84120 -31.08418 -30.02255 -29.34685 -28.36795 -27.64341 -27.16006 -25.36110 -23.95422 -21.64858 -21.58758 -20.54051 -19.76053 -19.57323 -18.25990 -17.77624 -17.71393 -16.85441 -16.73710 -16.34922 -16.28418 -15.96887 -15.51236 -15.04082 -14.91595 -14.76092 -14.56351 -14.43301 -14.29516 -13.99846 -13.85986 -13.59104 -13.49742 -13.21407 -13.16171 -13.12092 -12.91287 -12.84928 -12.80828 -12.66714 -12.55899 -12.17245 -11.86621 -11.72319 -11.60107 -11.21533 -11.10605 -10.94161 -10.85580 -10.52161 -10.23480 -10.06051 -9.77553 -8.62823 -8.32225 -6.09473 1.29751 1.40809 1.45207 1.49222 1.58480 1.68198 1.73221 2.27178 2.32562 2.73837 3.01887 3.17256 3.36108 3.37486 3.64423 3.70718 3.80189 3.95223 4.02372 4.09213 4.15067 4.15826 4.33205 4.38426 4.44683 4.47207 4.55437 4.57422 4.59015 4.68382 4.75063 4.79337 4.79567 4.80759 4.98183 5.02744 5.03749 5.06507 5.08283 5.17936 5.28976 5.34623 5.44213 5.48566 5.57739 6.21972 6.58579 6.64635 7.08363 7.09314 7.33171 8.76467 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.001852 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.879941 B =15117.389720 C =16155.183955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.075 0.925 4 N -0.706 5.706 5 C 0.538 3.462 6 O -0.564 6.564 7 C -0.131 4.131 8 S -0.152 6.152 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.996 3.004 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.261 1.261 17 C -0.110 4.110 18 C 0.110 3.890 19 N -0.649 5.649 20 C 0.563 3.437 21 O -0.574 6.574 22 C -0.190 4.190 23 H 0.139 0.861 24 C -0.138 4.138 25 C -0.100 4.100 26 C -0.113 4.113 27 C -0.098 4.098 28 C 0.105 3.895 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.417 0.583 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.270 0.730 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -9.273 26.799 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 H 0.093 0.907 4 N -0.360 5.360 5 C 0.323 3.677 6 O -0.442 6.442 7 C -0.282 4.282 8 S 0.075 5.925 9 C -0.694 4.694 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.818 3.182 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.130 4.130 18 C -0.013 4.013 19 N -0.383 5.383 20 C 0.355 3.645 21 O -0.455 6.455 22 C -0.210 4.210 23 H 0.157 0.843 24 C -0.175 4.175 25 C -0.101 4.101 26 C -0.170 4.170 27 C -0.155 4.155 28 C -0.017 4.017 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.254 0.746 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.274 -7.230 27.353 28.482 hybrid contribution 0.363 -1.700 -1.092 2.052 sum 3.637 -8.930 26.262 27.976 Atomic orbital electron populations 1.22151 0.94469 1.03159 1.02224 1.20820 0.94623 0.96592 0.82566 0.90672 1.45773 1.67538 1.14621 1.08109 1.19976 0.76610 0.86515 0.84558 1.90702 1.50612 1.17797 1.85117 1.23386 1.05626 1.03130 0.96051 1.85577 1.86700 1.17362 1.02889 1.23179 1.50800 0.98518 0.96882 0.89874 1.26107 0.95155 0.97147 1.00761 1.70178 1.46882 1.15459 1.22244 0.85034 0.79119 0.77778 0.76263 1.18741 1.20590 1.18595 1.23165 0.95923 1.02141 0.91751 1.23040 0.85968 1.01586 0.90683 1.49651 1.12308 1.70084 1.06227 1.19726 0.89322 0.75094 0.80379 1.90695 1.64166 1.53791 1.36802 1.22348 0.90655 1.08092 0.99928 0.84292 1.23298 1.00880 0.92028 1.01335 1.21729 0.98748 0.98721 0.90867 1.21406 0.94917 0.97428 1.03237 1.21259 0.96878 1.01587 0.95782 1.23315 0.97943 1.02877 0.77555 0.94564 0.90749 0.89952 0.74571 0.87047 0.87380 0.92073 0.85045 0.89908 0.89011 0.89507 0.85496 0.91811 0.90872 0.90880 0.91640 0.93819 0.93389 0.89257 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.29 71.98 0.67 -2.10 16 2 C 0.16 2.71 2.47 44.99 0.11 2.82 16 3 H 0.08 1.63 7.32 -2.39 -0.02 1.61 16 4 N -0.71 -14.16 5.08 -442.53 -2.25 -16.41 16 5 C 0.54 17.66 7.81 87.65 0.68 18.35 16 6 O -0.56 -24.12 15.53 -3.05 -0.05 -24.17 16 7 C -0.13 -4.77 6.16 71.23 0.44 -4.33 16 8 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 9 C -0.55 -30.35 9.50 67.95 0.65 -29.70 16 10 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 11 C 0.01 0.73 5.49 84.86 0.47 1.20 16 12 N -0.91 -55.17 13.22 21.65 0.29 -54.89 16 13 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 14 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 C -0.11 -1.22 3.67 -10.37 -0.04 -1.25 16 18 C 0.11 1.53 7.26 83.18 0.60 2.13 16 19 N -0.65 -10.74 3.69 -857.69 -3.16 -13.90 16 20 C 0.56 11.72 7.84 87.66 0.69 12.41 16 21 O -0.57 -15.99 13.88 -3.03 -0.04 -16.03 16 22 C -0.19 -2.84 5.74 -11.52 -0.07 -2.91 16 23 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 24 C -0.14 -1.80 9.53 30.62 0.29 -1.51 16 25 C -0.10 -1.43 2.70 -52.18 -0.14 -1.57 16 26 C -0.11 -1.06 9.85 71.98 0.71 -0.35 16 27 C -0.10 -1.76 8.09 71.98 0.58 -1.18 16 28 C 0.11 1.26 8.00 83.27 0.67 1.92 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.08 1.11 7.48 -2.39 -0.02 1.09 16 32 H 0.42 5.40 8.60 -92.71 -0.80 4.61 16 33 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 34 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.23 8.10 -2.39 -0.02 1.22 16 39 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 40 H 0.13 1.09 8.05 -2.39 -0.02 1.07 16 41 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.50 7.90 -2.39 -0.02 0.49 16 43 H 0.07 0.59 7.93 -2.39 -0.02 0.57 16 44 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 45 H 0.04 0.94 7.01 -2.38 -0.02 0.93 16 46 H 0.05 1.03 7.26 -2.39 -0.02 1.01 16 47 H 0.09 1.16 7.93 -2.39 -0.02 1.14 16 48 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -80.42 409.20 2.12 -78.30 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.15 Total: 17.82 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.31 Total: -6.07 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -5.12 Total: -85.20 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.09 Total: -40.20 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -80.42 2.12 -78.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280611404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.468 kcal (2) G-P(sol) polarization free energy of solvation -80.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds