Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47197 * 2 1 4 4 C 1.53000 * 109.47106 * 240.00848 * 2 1 3 5 5 C 1.52997 * 109.47341 * 174.99866 * 4 2 1 6 6 H 1.09001 * 109.47289 * 304.99525 * 5 4 2 7 7 C 1.53005 * 109.47452 * 184.99601 * 5 4 2 8 8 N 1.46506 * 109.47289 * 64.99653 * 5 4 2 9 9 C 1.34774 * 120.00251 * 205.00099 * 8 5 4 10 10 O 1.21615 * 119.99928 * 359.97438 * 9 8 5 11 11 C 1.47096 * 120.00240 * 179.97438 * 9 8 5 12 12 C 1.32616 * 124.62508 * 179.69814 * 11 9 8 13 13 C 1.51105 * 110.75884 * 179.84413 * 12 11 9 14 14 C 1.54578 * 104.90457 * 343.80490 * 13 12 11 15 15 C 1.51120 * 124.61958 * 0.02562 * 11 9 8 16 16 N 1.46494 * 109.47277 * 120.00412 * 2 1 3 17 17 C 1.34770 * 120.00234 * 274.99946 * 16 2 1 18 18 O 1.21284 * 120.00022 * 0.02562 * 17 16 2 19 19 C 1.50698 * 120.00222 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47317 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00075 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00473 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00042 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00031 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00103 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46785 * 60.00209 * 25 23 21 27 27 H 1.48497 * 109.47114 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47203 * 300.00363 * 25 23 21 29 29 H 1.08998 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46778 * 299.99782 * 1 2 3 31 31 H 1.09003 * 109.47230 * 59.99268 * 1 2 3 32 32 H 1.09004 * 109.47686 * 54.99681 * 4 2 1 33 33 H 1.09002 * 109.46818 * 294.99904 * 4 2 1 34 34 H 1.09001 * 109.46812 * 300.00216 * 7 5 4 35 35 H 1.09002 * 109.46935 * 59.99874 * 7 5 4 36 36 H 1.08992 * 109.47061 * 179.97438 * 7 5 4 37 37 H 0.97006 * 119.99584 * 25.00028 * 8 5 4 38 38 H 1.07999 * 124.61225 * 0.02562 * 12 11 9 39 39 H 1.09002 * 110.52143 * 224.85451 * 13 12 11 40 40 H 1.09006 * 110.24668 * 102.62427 * 13 12 11 41 41 H 1.08993 * 110.98347 * 266.70590 * 14 13 12 42 42 H 1.08999 * 110.98104 * 142.91030 * 14 13 12 43 43 H 1.08999 * 110.36244 * 315.44232 * 15 11 9 44 44 H 1.09000 * 110.36203 * 77.75962 * 15 11 9 45 45 H 0.96998 * 119.99885 * 95.00423 * 16 2 1 46 46 H 1.08997 * 109.47218 * 299.99759 * 19 17 16 47 47 H 1.09007 * 109.47258 * 60.00269 * 19 17 16 48 48 H 0.96996 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 1 3.8570 0.4360 -1.2679 7 6 4.0645 -1.2247 -2.6243 8 7 4.1537 -1.3341 -0.1826 9 6 5.3748 -0.9910 0.2731 10 8 5.9880 -0.0832 -0.2550 11 6 5.9659 -1.7146 1.4093 12 6 7.1596 -1.4583 1.9270 13 6 7.4519 -2.3854 3.0839 14 6 6.0804 -2.9861 3.4683 15 6 5.2986 -2.8560 2.1411 16 7 2.0183 -0.6907 1.1961 17 6 2.1471 -0.0185 2.3570 18 8 1.8582 1.1582 2.4118 19 6 2.6500 -0.7288 3.5873 20 16 2.7101 0.4339 4.9732 21 6 3.3148 -0.6310 6.2400 22 1 3.5249 -1.6673 6.0198 23 6 3.5203 -0.1384 7.5213 24 7 3.2638 1.1244 7.7899 25 14 4.1607 -1.2676 8.8645 26 1 5.4879 -1.8038 8.4692 27 1 4.2932 -0.5043 10.1314 28 1 3.2109 -2.3921 9.0605 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.6054 -0.2615 -2.1371 33 1 1.7516 -1.7713 -1.2058 34 1 3.7722 -2.2738 -2.6702 35 1 3.6263 -0.6883 -3.4659 36 1 5.1507 -1.1474 -2.6704 37 1 3.6647 -2.0584 0.2384 38 1 7.8300 -0.6895 1.5722 39 1 7.8709 -1.8295 3.9226 40 1 8.1372 -3.1735 2.7718 41 1 5.6073 -2.4041 4.2591 42 1 6.1804 -4.0312 3.7613 43 1 4.2529 -2.6202 2.3384 44 1 5.3782 -3.7760 1.5619 45 1 2.2491 -1.6318 1.1524 46 1 1.9778 -1.5511 3.8323 47 1 3.6494 -1.1206 3.3976 48 1 3.4078 1.4687 8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681538327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -70.498514 kcal Electronic energy + Delta-G solvation = -28798.060454 eV Core-core repulsion = 24978.960927 eV Total energy + Delta-G solvation = -3819.099527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38116 -39.25926 -37.95239 -36.72340 -34.46055 -32.43090 -32.32293 -30.82144 -29.15275 -28.72329 -28.09494 -27.03072 -25.48277 -23.11429 -21.79277 -21.35248 -20.79275 -20.02865 -18.75813 -17.83466 -17.17081 -16.78155 -16.23991 -15.92966 -15.63252 -15.05902 -14.81304 -14.76190 -14.57350 -14.08183 -13.87869 -13.57314 -13.23075 -13.05041 -12.83905 -12.79654 -12.64242 -12.47484 -12.33756 -12.32257 -11.95531 -11.91487 -11.65962 -11.54197 -11.18751 -11.16650 -11.06863 -11.03639 -11.00951 -10.93433 -10.76811 -9.86542 -9.82399 -9.36650 -9.29964 -9.06272 -8.93480 -8.72978 -8.21741 -6.48512 -6.21364 -3.91329 1.42135 2.97989 3.11527 3.16053 3.21492 3.26917 3.30629 3.35771 3.71872 4.19850 4.30302 4.48609 4.54342 4.63499 4.87481 4.96324 5.04648 5.11345 5.13755 5.18153 5.22628 5.25815 5.32698 5.39360 5.46820 5.52562 5.55875 5.60675 5.62379 5.67750 5.69555 5.83745 5.84596 5.89305 5.98403 6.01344 6.04785 6.13435 6.20031 6.27807 6.32239 6.43507 6.55573 6.67098 7.44545 7.58289 7.68655 8.24067 8.34376 8.64284 9.23609 10.86000 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004307 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.314380 B = 6499.458473 C = 8440.627936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.091 0.909 7 C -0.162 4.162 8 N -0.717 5.717 9 C 0.572 3.428 10 O -0.543 6.543 11 C -0.202 4.202 12 C -0.061 4.061 13 C -0.108 4.108 14 C -0.127 4.127 15 C -0.090 4.090 16 N -0.730 5.730 17 C 0.533 3.467 18 O -0.515 6.515 19 C -0.157 4.157 20 S -0.057 6.057 21 C -0.533 4.533 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.915 3.085 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.394 0.606 38 H 0.136 0.864 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.388 0.612 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -11.682 -18.432 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.109 0.891 7 C -0.220 4.220 8 N -0.370 5.370 9 C 0.361 3.639 10 O -0.421 6.421 11 C -0.205 4.205 12 C -0.081 4.081 13 C -0.145 4.145 14 C -0.164 4.164 15 C -0.127 4.127 16 N -0.386 5.386 17 C 0.319 3.681 18 O -0.389 6.389 19 C -0.307 4.307 20 S 0.170 5.830 21 C -0.682 4.682 22 H 0.089 0.911 23 C -0.134 4.134 24 N -0.502 5.502 25 Si 0.741 3.259 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.229 0.771 38 H 0.154 0.846 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.222 0.778 46 H 0.105 0.895 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.107 -8.901 -18.593 20.643 hybrid contribution 0.562 -2.871 0.999 3.091 sum 1.669 -11.771 -17.594 21.234 Atomic orbital electron populations 1.22178 0.95269 1.01946 1.02739 1.20903 0.93883 0.97871 0.83583 0.89249 1.22254 0.94462 1.01845 0.98753 1.20974 0.91902 0.97948 0.85474 0.89087 1.22173 1.02272 1.00876 0.96693 1.46010 1.18575 1.37738 1.34669 1.17958 0.80891 0.82577 0.82441 1.90777 1.61600 1.30388 1.59328 1.21754 0.98287 1.01118 0.99363 1.24065 0.95103 0.95345 0.93581 1.21483 0.98468 0.97831 0.96681 1.22480 0.94963 1.01624 0.97353 1.21273 0.99804 0.95873 0.95734 1.46171 1.69469 1.13203 1.09740 1.20272 0.76807 0.87281 0.83724 1.90702 1.48138 1.15705 1.84334 1.23617 1.03536 1.04883 0.98678 1.85467 1.86189 1.12818 0.98547 1.22785 1.51005 0.98032 0.96330 0.91069 1.24964 0.95149 0.95441 0.97882 1.70005 1.45450 1.13229 1.21553 0.86283 0.79320 0.80095 0.80168 1.19909 1.20863 1.19978 0.92648 0.91602 0.91905 0.88722 0.90805 0.92546 0.91618 0.91992 0.77054 0.84626 0.89773 0.89977 0.89421 0.90689 0.91081 0.90671 0.77760 0.89534 0.89154 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 2 C 0.14 1.56 2.57 -67.93 -0.17 1.39 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 C -0.13 -1.00 4.43 -26.73 -0.12 -1.12 16 5 C 0.14 1.36 2.57 -67.93 -0.17 1.19 16 6 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 7 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 8 N -0.72 -7.57 3.79 -54.99 -0.21 -7.78 16 9 C 0.57 8.11 7.76 -12.67 -0.10 8.01 16 10 O -0.54 -9.66 16.43 5.26 0.09 -9.57 16 11 C -0.20 -2.62 6.09 -102.73 -0.63 -3.24 16 12 C -0.06 -0.79 10.43 -36.01 -0.38 -1.16 16 13 C -0.11 -1.19 6.80 -26.86 -0.18 -1.37 16 14 C -0.13 -1.46 7.17 -25.07 -0.18 -1.64 16 15 C -0.09 -0.95 5.83 -26.84 -0.16 -1.10 16 16 N -0.73 -9.12 3.80 -53.81 -0.20 -9.32 16 17 C 0.53 9.72 7.81 -10.99 -0.09 9.63 16 18 O -0.52 -11.67 15.53 5.55 0.09 -11.58 16 19 C -0.16 -3.05 6.15 36.00 0.22 -2.83 16 20 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 21 C -0.53 -14.68 9.50 30.94 0.29 -14.38 16 22 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 23 C 0.08 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 25 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.39 3.28 5.51 -40.82 -0.23 3.06 16 38 H 0.14 1.75 8.03 -52.49 -0.42 1.33 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.74 6.17 -51.93 -0.32 0.42 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.39 3.69 6.51 -40.82 -0.27 3.43 16 46 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 47 H 0.09 1.64 6.25 -51.91 -0.32 1.31 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -35.98 403.52 -9.52 -45.50 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.81 Total: 6.58 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.05 Total: -6.91 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.32 Total: -42.25 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.98 -9.52 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.000 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds