Wall clock time and date at job start Sat Apr 11 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47197 * 2 1 4 4 C 1.53000 * 109.47106 * 240.00848 * 2 1 3 5 5 C 1.52997 * 109.47341 * 174.99866 * 4 2 1 6 6 H 1.09001 * 109.47289 * 304.99525 * 5 4 2 7 7 C 1.53005 * 109.47452 * 184.99601 * 5 4 2 8 8 N 1.46506 * 109.47289 * 64.99653 * 5 4 2 9 9 C 1.34774 * 120.00251 * 205.00099 * 8 5 4 10 10 O 1.21615 * 119.99928 * 359.97438 * 9 8 5 11 11 C 1.47096 * 120.00240 * 179.97438 * 9 8 5 12 12 C 1.32616 * 124.62508 * 179.69814 * 11 9 8 13 13 C 1.51105 * 110.75884 * 179.84413 * 12 11 9 14 14 C 1.54578 * 104.90457 * 343.80490 * 13 12 11 15 15 C 1.51120 * 124.61958 * 0.02562 * 11 9 8 16 16 N 1.46494 * 109.47277 * 120.00412 * 2 1 3 17 17 C 1.34770 * 120.00234 * 274.99946 * 16 2 1 18 18 O 1.21284 * 120.00022 * 0.02562 * 17 16 2 19 19 C 1.50698 * 120.00222 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47317 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00075 * 180.02562 * 20 19 17 22 22 H 1.07999 * 120.00473 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00042 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00031 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00103 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46785 * 60.00209 * 25 23 21 27 27 H 1.48497 * 109.47114 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47203 * 300.00363 * 25 23 21 29 29 H 1.08998 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46778 * 299.99782 * 1 2 3 31 31 H 1.09003 * 109.47230 * 59.99268 * 1 2 3 32 32 H 1.09004 * 109.47686 * 54.99681 * 4 2 1 33 33 H 1.09002 * 109.46818 * 294.99904 * 4 2 1 34 34 H 1.09001 * 109.46812 * 300.00216 * 7 5 4 35 35 H 1.09002 * 109.46935 * 59.99874 * 7 5 4 36 36 H 1.08992 * 109.47061 * 179.97438 * 7 5 4 37 37 H 0.97006 * 119.99584 * 25.00028 * 8 5 4 38 38 H 1.07999 * 124.61225 * 0.02562 * 12 11 9 39 39 H 1.09002 * 110.52143 * 224.85451 * 13 12 11 40 40 H 1.09006 * 110.24668 * 102.62427 * 13 12 11 41 41 H 1.08993 * 110.98347 * 266.70590 * 14 13 12 42 42 H 1.08999 * 110.98104 * 142.91030 * 14 13 12 43 43 H 1.08999 * 110.36244 * 315.44232 * 15 11 9 44 44 H 1.09000 * 110.36203 * 77.75962 * 15 11 9 45 45 H 0.96998 * 119.99885 * 95.00423 * 16 2 1 46 46 H 1.08997 * 109.47218 * 299.99759 * 19 17 16 47 47 H 1.09007 * 109.47258 * 60.00269 * 19 17 16 48 48 H 0.96996 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3138 6 1 3.8570 0.4360 -1.2679 7 6 4.0645 -1.2247 -2.6243 8 7 4.1537 -1.3341 -0.1826 9 6 5.3748 -0.9910 0.2731 10 8 5.9880 -0.0832 -0.2550 11 6 5.9659 -1.7146 1.4093 12 6 7.1596 -1.4583 1.9270 13 6 7.4519 -2.3854 3.0839 14 6 6.0804 -2.9861 3.4683 15 6 5.2986 -2.8560 2.1411 16 7 2.0183 -0.6907 1.1961 17 6 2.1471 -0.0185 2.3570 18 8 1.8582 1.1582 2.4118 19 6 2.6500 -0.7288 3.5873 20 16 2.7101 0.4339 4.9732 21 6 3.3148 -0.6310 6.2400 22 1 3.5249 -1.6673 6.0198 23 6 3.5203 -0.1384 7.5213 24 7 3.2638 1.1244 7.7899 25 14 4.1607 -1.2676 8.8645 26 1 5.4879 -1.8038 8.4692 27 1 4.2932 -0.5043 10.1314 28 1 3.2109 -2.3921 9.0605 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 1.6054 -0.2615 -2.1371 33 1 1.7516 -1.7713 -1.2058 34 1 3.7722 -2.2738 -2.6702 35 1 3.6263 -0.6883 -3.4659 36 1 5.1507 -1.1474 -2.6704 37 1 3.6647 -2.0584 0.2384 38 1 7.8300 -0.6895 1.5722 39 1 7.8709 -1.8295 3.9226 40 1 8.1372 -3.1735 2.7718 41 1 5.6073 -2.4041 4.2591 42 1 6.1804 -4.0312 3.7613 43 1 4.2529 -2.6202 2.3384 44 1 5.3782 -3.7760 1.5619 45 1 2.2491 -1.6318 1.1524 46 1 1.9778 -1.5511 3.8323 47 1 3.6494 -1.1206 3.3976 48 1 3.4078 1.4687 8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681538327.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:05 Heat of formation + Delta-G solvation = -94.677482 kcal Electronic energy + Delta-G solvation = -28799.108932 eV Core-core repulsion = 24978.960927 eV Total energy + Delta-G solvation = -3820.148006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44983 -40.55081 -38.92490 -37.85235 -35.56745 -34.54404 -33.44520 -31.90381 -30.11833 -30.01382 -29.05760 -27.75736 -27.61155 -24.06013 -22.89408 -22.24798 -21.81333 -21.17423 -19.80254 -19.74260 -18.16802 -17.97449 -17.52091 -17.07649 -16.84864 -16.63672 -16.31129 -15.99403 -15.76041 -15.56700 -14.97138 -14.64141 -14.50590 -14.44372 -13.95433 -13.75354 -13.60562 -13.46430 -13.27265 -13.18296 -13.13254 -12.95629 -12.87696 -12.83795 -12.62177 -12.58276 -12.43565 -12.07263 -12.02945 -11.86389 -11.80333 -11.69974 -11.09144 -10.98588 -10.89324 -10.37850 -10.22259 -9.98508 -9.74969 -8.62765 -8.30661 -6.07982 0.38604 1.28856 1.45080 1.48938 1.57444 1.65350 2.13995 2.29075 2.30954 2.36538 3.04021 3.35205 3.48819 3.58014 3.64582 3.85592 3.99653 4.07898 4.15447 4.17719 4.26222 4.30634 4.38622 4.43409 4.46997 4.53730 4.74211 4.75613 4.79144 4.80865 4.83600 4.88921 4.94197 4.95615 5.03142 5.16764 5.18367 5.30491 5.34646 5.36792 5.37618 5.46809 5.51294 5.55801 5.59610 6.23591 6.48904 6.52057 7.10831 7.21923 7.28377 8.78388 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.004307 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.314380 B = 6499.458473 C = 8440.627936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 H 0.053 0.947 4 C -0.118 4.118 5 C 0.136 3.864 6 H 0.054 0.946 7 C -0.153 4.153 8 N -0.702 5.702 9 C 0.563 3.437 10 O -0.591 6.591 11 C -0.214 4.214 12 C -0.078 4.078 13 C -0.103 4.103 14 C -0.128 4.128 15 C -0.083 4.083 16 N -0.703 5.703 17 C 0.532 3.468 18 O -0.568 6.568 19 C -0.130 4.130 20 S -0.155 6.155 21 C -0.535 4.535 22 H 0.086 0.914 23 C 0.014 3.986 24 N -0.915 5.915 25 Si 0.993 3.007 26 H -0.259 1.259 27 H -0.284 1.284 28 H -0.260 1.260 29 H 0.079 0.921 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.407 0.593 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.407 0.593 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 -16.047 -19.942 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.071 0.929 4 C -0.156 4.156 5 C 0.032 3.968 6 H 0.072 0.928 7 C -0.211 4.211 8 N -0.355 5.355 9 C 0.352 3.648 10 O -0.473 6.473 11 C -0.217 4.217 12 C -0.098 4.098 13 C -0.140 4.140 14 C -0.165 4.165 15 C -0.119 4.119 16 N -0.359 5.359 17 C 0.318 3.682 18 O -0.446 6.446 19 C -0.281 4.281 20 S 0.072 5.928 21 C -0.683 4.683 22 H 0.104 0.896 23 C -0.190 4.190 24 N -0.551 5.551 25 Si 0.815 3.185 26 H -0.183 1.183 27 H -0.210 1.210 28 H -0.184 1.184 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.245 0.755 38 H 0.141 0.859 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.245 0.755 46 H 0.129 0.871 47 H 0.125 0.875 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.372 -13.345 -20.153 24.174 hybrid contribution 0.763 -1.488 1.312 2.126 sum 1.136 -14.833 -18.841 24.007 Atomic orbital electron populations 1.22119 0.93981 1.03301 1.02066 1.21088 0.94823 0.96579 0.84128 0.92858 1.22227 0.92143 1.03687 0.97498 1.21092 0.93579 0.96111 0.86006 0.92761 1.22091 1.00530 1.02424 0.96065 1.45951 1.17441 1.37539 1.34530 1.18301 0.81685 0.82165 0.82626 1.90750 1.63052 1.32565 1.60938 1.21988 0.98554 1.01945 0.99206 1.24264 0.95355 0.95640 0.94505 1.21499 0.99000 0.98000 0.95477 1.22478 0.94792 1.02513 0.96767 1.21311 0.99308 0.96114 0.95209 1.45931 1.67534 1.13886 1.08527 1.20102 0.76630 0.86632 0.84825 1.90693 1.50743 1.17942 1.85200 1.23438 1.05224 1.03226 0.96191 1.85722 1.86607 1.17595 1.02865 1.23114 1.50448 0.98375 0.96382 0.89562 1.26086 0.95198 0.97021 1.00732 1.70194 1.47164 1.15653 1.22128 0.85082 0.79328 0.77876 0.76247 1.18320 1.20957 1.18444 0.90158 0.95386 0.89575 0.85860 0.87211 0.90168 0.89757 0.94721 0.75463 0.85927 0.90665 0.87251 0.92822 0.88079 0.90793 0.87334 0.75498 0.87114 0.87534 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.48 71.98 0.68 -2.14 16 2 C 0.14 2.79 2.57 44.99 0.12 2.90 16 3 H 0.05 1.51 7.58 -2.39 -0.02 1.50 16 4 C -0.12 -1.28 4.43 30.59 0.14 -1.15 16 5 C 0.14 2.38 2.57 44.99 0.12 2.50 16 6 H 0.05 1.39 7.58 -2.39 -0.02 1.37 16 7 C -0.15 -2.09 9.48 71.98 0.68 -1.41 16 8 N -0.70 -13.61 3.79 -446.13 -1.69 -15.30 16 9 C 0.56 15.95 7.76 86.57 0.67 16.62 16 10 O -0.59 -22.08 16.43 -4.08 -0.07 -22.15 16 11 C -0.21 -5.39 6.09 -18.57 -0.11 -5.51 16 12 C -0.08 -2.02 10.43 24.65 0.26 -1.76 16 13 C -0.10 -2.15 6.80 30.51 0.21 -1.94 16 14 C -0.13 -2.67 7.17 31.67 0.23 -2.45 16 15 C -0.08 -1.51 5.83 30.52 0.18 -1.33 16 16 N -0.70 -16.37 3.80 -442.55 -1.68 -18.05 16 17 C 0.53 19.50 7.81 87.66 0.68 20.18 16 18 O -0.57 -26.94 15.53 -3.04 -0.05 -26.99 16 19 C -0.13 -5.02 6.15 71.24 0.44 -4.58 16 20 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 21 C -0.54 -29.71 9.50 67.96 0.65 -29.07 16 22 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.79 5.49 84.86 0.47 1.26 16 24 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 25 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.41 5.38 5.51 -92.70 -0.51 4.87 16 38 H 0.12 3.41 8.03 -2.91 -0.02 3.38 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 1.29 6.17 -2.39 -0.01 1.27 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.41 6.30 6.51 -92.71 -0.60 5.70 16 46 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 47 H 0.11 3.77 6.25 -2.39 -0.01 3.76 16 48 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -86.49 403.52 2.91 -83.57 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.15 Total: 27.77 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.40 Total: -7.86 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.09 Total: -89.33 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.11 Total: -49.14 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -86.49 2.91 -83.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538327.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.103 kcal (2) G-P(sol) polarization free energy of solvation -86.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds