Wall clock time and date at job start Sat Apr 11 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46709 * 2 1 4 4 C 1.53001 * 109.46969 * 240.00534 * 2 1 3 5 5 C 1.52997 * 109.47188 * 174.99879 * 4 2 1 6 6 H 1.08999 * 109.46736 * 304.99648 * 5 4 2 7 7 C 1.52996 * 109.47092 * 184.99694 * 5 4 2 8 8 N 1.46501 * 109.47274 * 64.99645 * 5 4 2 9 9 C 1.34769 * 120.00048 * 204.99975 * 8 5 4 10 10 O 1.21276 * 120.00238 * 0.02562 * 9 8 5 11 11 C 1.50705 * 119.99959 * 180.02562 * 9 8 5 12 12 S 1.80998 * 109.47080 * 180.02562 * 11 9 8 13 13 C 1.76205 * 99.99851 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99952 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99881 * 180.02562 * 13 12 11 16 16 N 1.31630 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99898 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47543 * 89.99531 * 17 15 13 19 19 H 1.48498 * 109.46883 * 209.99850 * 17 15 13 20 20 H 1.48502 * 109.46760 * 329.99554 * 17 15 13 21 21 N 1.46491 * 109.47209 * 120.00163 * 2 1 3 22 22 C 1.34777 * 120.00351 * 274.99832 * 21 2 1 23 23 O 1.21615 * 120.00119 * 0.02562 * 22 21 2 24 24 C 1.47098 * 120.00033 * 180.02562 * 22 21 2 25 25 C 1.32620 * 124.62044 * 179.97438 * 24 22 21 26 26 C 1.51107 * 110.75974 * 180.02562 * 25 24 22 27 27 C 1.54582 * 104.84075 * 16.59843 * 26 25 24 28 28 C 1.51111 * 124.62305 * 359.97438 * 24 22 21 29 29 H 1.08998 * 109.47330 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46577 * 299.99529 * 1 2 3 31 31 H 1.08995 * 109.47378 * 59.99194 * 1 2 3 32 32 H 1.09002 * 109.46692 * 295.00237 * 4 2 1 33 33 H 1.08998 * 109.46887 * 54.99274 * 4 2 1 34 34 H 1.09000 * 109.47563 * 300.00088 * 7 5 4 35 35 H 1.09008 * 109.47138 * 59.99840 * 7 5 4 36 36 H 1.09002 * 109.47229 * 179.97438 * 7 5 4 37 37 H 0.97002 * 119.99404 * 25.00493 * 8 5 4 38 38 H 1.09003 * 109.46900 * 300.00105 * 11 9 8 39 39 H 1.08998 * 109.47133 * 59.99634 * 11 9 8 40 40 H 0.97001 * 119.99697 * 180.02562 * 16 15 13 41 41 H 0.97001 * 119.99848 * 94.99920 * 21 2 1 42 42 H 1.08001 * 124.61748 * 0.02562 * 25 24 22 43 43 H 1.08995 * 110.37050 * 257.75748 * 26 25 24 44 44 H 1.09004 * 110.36927 * 135.43913 * 26 25 24 45 45 H 1.09002 * 110.98562 * 216.86939 * 27 26 25 46 46 H 1.09003 * 110.98058 * 93.07415 * 27 26 25 47 47 H 1.09001 * 110.36215 * 44.54767 * 28 24 22 48 48 H 1.08995 * 110.46155 * 282.26959 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8569 0.4359 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1537 -1.3341 -0.1826 9 6 5.3747 -0.9910 0.2731 10 8 5.9859 -0.0852 -0.2530 11 6 5.9808 -1.7330 1.4364 12 16 7.6122 -1.0428 1.8083 13 6 8.0748 -2.0658 3.1663 14 1 7.4040 -2.8375 3.5142 15 6 9.3013 -1.8799 3.7890 16 7 10.1190 -0.9397 3.3646 17 14 9.7921 -2.9649 5.2282 18 1 10.5100 -4.1626 4.7231 19 1 10.6813 -2.2032 6.1416 20 1 8.5748 -3.3913 5.9642 21 7 2.0183 -0.6906 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8575 1.1615 2.4119 24 6 2.6380 -0.7117 3.5579 25 6 2.8001 -0.1412 4.7441 26 6 3.3199 -1.1396 5.7522 27 6 3.8565 -2.3155 4.9043 28 6 3.0264 -2.1712 3.6081 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7515 -1.7714 -1.2057 33 1 1.6052 -0.2616 -2.1370 34 1 3.7722 -2.2739 -2.6702 35 1 3.6262 -0.6884 -3.4659 36 1 5.1507 -1.1475 -2.6704 37 1 3.6647 -2.0584 0.2384 38 1 5.3356 -1.6300 2.3089 39 1 6.0816 -2.7880 1.1816 40 1 10.9763 -0.8101 3.7995 41 1 2.2490 -1.6318 1.1525 42 1 2.5892 0.8958 4.9601 43 1 2.5129 -1.4779 6.4020 44 1 4.1239 -0.6995 6.3422 45 1 3.6574 -3.2704 5.3908 46 1 4.9210 -2.1968 4.7019 47 1 3.6310 -2.4329 2.7398 48 1 2.1377 -2.8006 3.6544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681538328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:09 Heat of formation + Delta-G solvation = -70.530961 kcal Electronic energy + Delta-G solvation = -28799.276993 eV Core-core repulsion = 24980.176059 eV Total energy + Delta-G solvation = -3819.100934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38138 -39.25980 -37.95263 -36.72399 -34.46127 -32.43302 -32.32296 -30.82128 -29.14968 -28.72319 -28.09502 -27.03068 -25.48551 -23.11351 -21.79230 -21.35235 -20.79202 -20.02859 -18.75765 -17.83635 -17.17107 -16.78211 -16.24096 -15.93054 -15.63012 -15.05918 -14.81461 -14.76195 -14.57476 -14.08395 -13.87852 -13.57386 -13.23168 -13.04747 -12.83936 -12.79595 -12.64350 -12.47576 -12.33779 -12.32318 -11.95323 -11.91554 -11.65980 -11.54226 -11.18562 -11.16579 -11.07450 -11.04516 -10.99967 -10.93475 -10.76155 -9.86512 -9.81672 -9.36682 -9.29966 -9.07158 -8.93442 -8.72995 -8.21471 -6.48614 -6.21718 -3.91563 1.42184 2.97974 3.11532 3.16055 3.20589 3.27389 3.30960 3.35801 3.71835 4.19530 4.30310 4.48714 4.54458 4.63492 4.87506 4.96442 5.04768 5.11309 5.13601 5.18163 5.22625 5.25797 5.32744 5.39349 5.46868 5.52530 5.56124 5.60777 5.62342 5.67658 5.69528 5.83735 5.84575 5.89280 5.98443 6.01537 6.04778 6.13493 6.19983 6.27843 6.32476 6.43588 6.55646 6.67037 7.44564 7.58430 7.68641 8.24095 8.34381 8.64262 9.23455 10.85703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004307 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.468412 B = 6499.642401 C = 8439.273785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.143 3.857 6 H 0.089 0.911 7 C -0.163 4.163 8 N -0.730 5.730 9 C 0.533 3.467 10 O -0.515 6.515 11 C -0.157 4.157 12 S -0.057 6.057 13 C -0.532 4.532 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.915 3.085 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 N -0.717 5.717 22 C 0.572 3.428 23 O -0.543 6.543 24 C -0.202 4.202 25 C -0.061 4.061 26 C -0.108 4.108 27 C -0.127 4.127 28 C -0.090 4.090 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.388 0.612 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.268 0.732 41 H 0.394 0.606 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.846 -5.051 -4.216 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.386 5.386 9 C 0.319 3.681 10 O -0.389 6.389 11 C -0.307 4.307 12 S 0.169 5.831 13 C -0.681 4.681 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.742 3.258 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.196 1.196 21 N -0.370 5.370 22 C 0.361 3.639 23 O -0.421 6.421 24 C -0.205 4.205 25 C -0.081 4.081 26 C -0.145 4.145 27 C -0.164 4.164 28 C -0.127 4.127 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.222 0.778 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.229 0.771 42 H 0.154 0.846 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.855 -2.592 -5.067 20.655 hybrid contribution -0.461 -2.560 1.660 3.085 sum -20.316 -5.152 -3.408 21.235 Atomic orbital electron populations 1.22173 0.95201 1.01998 1.02643 1.20970 0.93740 0.97989 0.83599 0.89088 1.22253 0.95132 1.01677 0.98251 1.20903 0.91250 0.98078 0.86010 0.89248 1.22179 1.02753 1.00678 0.96522 1.46174 1.19140 1.38185 1.35088 1.20270 0.80427 0.83463 0.83923 1.90700 1.60361 1.29560 1.58252 1.23618 1.05787 1.03045 0.98260 1.85472 1.08758 1.46880 1.41954 1.22825 1.05903 1.21075 1.18276 0.91017 1.24966 0.95393 0.95618 0.97486 1.70017 1.09345 1.30548 1.40317 0.86224 0.78577 0.79918 0.81127 1.20334 1.20801 1.19649 1.46006 1.67805 1.13573 1.09606 1.17960 0.76822 0.86177 0.82907 1.90777 1.50561 1.15570 1.85183 1.21751 1.07330 0.97116 0.94326 1.24070 0.91161 0.99233 0.93619 1.21486 1.00718 0.94763 0.97492 1.22486 1.01230 0.98078 0.94631 1.21268 0.99569 0.92365 0.99479 0.92548 0.91996 0.91612 0.90805 0.88723 0.92645 0.91905 0.91605 0.77759 0.89159 0.89533 0.92218 0.77055 0.84624 0.89943 0.89787 0.90698 0.89420 0.91097 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.14 1.36 2.57 -67.93 -0.17 1.19 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 4 C -0.13 -1.00 4.43 -26.73 -0.12 -1.12 16 5 C 0.14 1.56 2.57 -67.93 -0.17 1.39 16 6 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 7 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 8 N -0.73 -9.12 3.80 -53.81 -0.20 -9.32 16 9 C 0.53 9.72 7.81 -10.99 -0.09 9.63 16 10 O -0.51 -11.67 15.52 5.56 0.09 -11.58 16 11 C -0.16 -3.05 6.15 36.01 0.22 -2.83 16 12 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 13 C -0.53 -14.66 9.50 30.94 0.29 -14.36 16 14 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 17 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 N -0.72 -7.58 3.79 -54.99 -0.21 -7.78 16 22 C 0.57 8.11 7.76 -12.67 -0.10 8.02 16 23 O -0.54 -9.66 16.43 5.26 0.09 -9.57 16 24 C -0.20 -2.62 6.09 -102.73 -0.63 -3.25 16 25 C -0.06 -0.79 10.43 -36.01 -0.38 -1.16 16 26 C -0.11 -1.19 6.80 -26.85 -0.18 -1.37 16 27 C -0.13 -1.47 7.16 -25.06 -0.18 -1.65 16 28 C -0.09 -0.95 5.83 -26.84 -0.16 -1.11 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 3.69 6.51 -40.82 -0.27 3.43 16 38 H 0.09 1.64 6.25 -51.91 -0.32 1.31 16 39 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.39 3.28 5.51 -40.82 -0.23 3.06 16 42 H 0.14 1.75 8.03 -52.49 -0.42 1.33 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.07 0.74 6.17 -51.93 -0.32 0.42 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -35.99 403.52 -9.52 -45.51 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.81 Total: 6.56 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.05 Total: -6.91 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.32 Total: -42.24 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.99 -9.52 -45.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.021 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds