Wall clock time and date at job start Sat Apr 11 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46709 * 2 1 4 4 C 1.53001 * 109.46969 * 240.00534 * 2 1 3 5 5 C 1.52997 * 109.47188 * 174.99879 * 4 2 1 6 6 H 1.08999 * 109.46736 * 304.99648 * 5 4 2 7 7 C 1.52996 * 109.47092 * 184.99694 * 5 4 2 8 8 N 1.46501 * 109.47274 * 64.99645 * 5 4 2 9 9 C 1.34769 * 120.00048 * 204.99975 * 8 5 4 10 10 O 1.21276 * 120.00238 * 0.02562 * 9 8 5 11 11 C 1.50705 * 119.99959 * 180.02562 * 9 8 5 12 12 S 1.80998 * 109.47080 * 180.02562 * 11 9 8 13 13 C 1.76205 * 99.99851 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99952 * 0.02562 * 13 12 11 15 15 C 1.38801 * 119.99881 * 180.02562 * 13 12 11 16 16 N 1.31630 * 119.99862 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99898 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47543 * 89.99531 * 17 15 13 19 19 H 1.48498 * 109.46883 * 209.99850 * 17 15 13 20 20 H 1.48502 * 109.46760 * 329.99554 * 17 15 13 21 21 N 1.46491 * 109.47209 * 120.00163 * 2 1 3 22 22 C 1.34777 * 120.00351 * 274.99832 * 21 2 1 23 23 O 1.21615 * 120.00119 * 0.02562 * 22 21 2 24 24 C 1.47098 * 120.00033 * 180.02562 * 22 21 2 25 25 C 1.32620 * 124.62044 * 179.97438 * 24 22 21 26 26 C 1.51107 * 110.75974 * 180.02562 * 25 24 22 27 27 C 1.54582 * 104.84075 * 16.59843 * 26 25 24 28 28 C 1.51111 * 124.62305 * 359.97438 * 24 22 21 29 29 H 1.08998 * 109.47330 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46577 * 299.99529 * 1 2 3 31 31 H 1.08995 * 109.47378 * 59.99194 * 1 2 3 32 32 H 1.09002 * 109.46692 * 295.00237 * 4 2 1 33 33 H 1.08998 * 109.46887 * 54.99274 * 4 2 1 34 34 H 1.09000 * 109.47563 * 300.00088 * 7 5 4 35 35 H 1.09008 * 109.47138 * 59.99840 * 7 5 4 36 36 H 1.09002 * 109.47229 * 179.97438 * 7 5 4 37 37 H 0.97002 * 119.99404 * 25.00493 * 8 5 4 38 38 H 1.09003 * 109.46900 * 300.00105 * 11 9 8 39 39 H 1.08998 * 109.47133 * 59.99634 * 11 9 8 40 40 H 0.97001 * 119.99697 * 180.02562 * 16 15 13 41 41 H 0.97001 * 119.99848 * 94.99920 * 21 2 1 42 42 H 1.08001 * 124.61748 * 0.02562 * 25 24 22 43 43 H 1.08995 * 110.37050 * 257.75748 * 26 25 24 44 44 H 1.09004 * 110.36927 * 135.43913 * 26 25 24 45 45 H 1.09002 * 110.98562 * 216.86939 * 27 26 25 46 46 H 1.09003 * 110.98058 * 93.07415 * 27 26 25 47 47 H 1.09001 * 110.36215 * 44.54767 * 28 24 22 48 48 H 1.08995 * 110.46155 * 282.26959 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8569 0.4359 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1537 -1.3341 -0.1826 9 6 5.3747 -0.9910 0.2731 10 8 5.9859 -0.0852 -0.2530 11 6 5.9808 -1.7330 1.4364 12 16 7.6122 -1.0428 1.8083 13 6 8.0748 -2.0658 3.1663 14 1 7.4040 -2.8375 3.5142 15 6 9.3013 -1.8799 3.7890 16 7 10.1190 -0.9397 3.3646 17 14 9.7921 -2.9649 5.2282 18 1 10.5100 -4.1626 4.7231 19 1 10.6813 -2.2032 6.1416 20 1 8.5748 -3.3913 5.9642 21 7 2.0183 -0.6906 1.1961 22 6 2.1471 -0.0183 2.3571 23 8 1.8575 1.1615 2.4119 24 6 2.6380 -0.7117 3.5579 25 6 2.8001 -0.1412 4.7441 26 6 3.3199 -1.1396 5.7522 27 6 3.8565 -2.3155 4.9043 28 6 3.0264 -2.1712 3.6081 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7515 -1.7714 -1.2057 33 1 1.6052 -0.2616 -2.1370 34 1 3.7722 -2.2739 -2.6702 35 1 3.6262 -0.6884 -3.4659 36 1 5.1507 -1.1475 -2.6704 37 1 3.6647 -2.0584 0.2384 38 1 5.3356 -1.6300 2.3089 39 1 6.0816 -2.7880 1.1816 40 1 10.9763 -0.8101 3.7995 41 1 2.2490 -1.6318 1.1525 42 1 2.5892 0.8958 4.9601 43 1 2.5129 -1.4779 6.4020 44 1 4.1239 -0.6995 6.3422 45 1 3.6574 -3.2704 5.3908 46 1 4.9210 -2.1968 4.7019 47 1 3.6310 -2.4329 2.7398 48 1 2.1377 -2.8006 3.6544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681538328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:09 Heat of formation + Delta-G solvation = -94.718679 kcal Electronic energy + Delta-G solvation = -28800.325851 eV Core-core repulsion = 24980.176059 eV Total energy + Delta-G solvation = -3820.149792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45023 -40.55151 -38.92574 -37.85291 -35.56810 -34.54615 -33.44517 -31.90368 -30.11714 -30.01326 -29.05805 -27.75737 -27.61475 -24.05964 -22.89385 -22.24815 -21.81345 -21.17431 -19.80432 -19.74269 -18.16882 -17.97517 -17.52181 -17.07757 -16.85136 -16.63568 -16.31236 -15.99331 -15.76154 -15.56867 -14.97184 -14.64149 -14.50913 -14.44422 -13.95181 -13.75327 -13.60456 -13.46677 -13.27220 -13.18237 -13.13105 -12.95547 -12.88087 -12.87039 -12.62075 -12.55762 -12.43573 -12.07196 -12.02892 -11.86129 -11.80081 -11.68484 -11.11096 -10.98596 -10.89345 -10.37849 -10.21980 -9.98495 -9.74972 -8.62848 -8.31017 -6.08203 0.38639 1.28916 1.43525 1.49276 1.58193 1.65378 2.13990 2.28823 2.30857 2.36536 3.03877 3.35078 3.48805 3.58052 3.64571 3.85579 3.99606 4.07898 4.15467 4.17656 4.26234 4.30565 4.38633 4.43394 4.46980 4.53748 4.74248 4.75685 4.79186 4.80854 4.83595 4.88911 4.94185 4.95596 5.03134 5.16752 5.18304 5.30499 5.34693 5.36803 5.37577 5.46925 5.51318 5.55845 5.59620 6.23674 6.48901 6.52053 7.10676 7.21937 7.28364 8.78285 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.004307 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.468412 B = 6499.642401 C = 8439.273785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.054 0.946 4 C -0.118 4.118 5 C 0.138 3.862 6 H 0.053 0.947 7 C -0.157 4.157 8 N -0.703 5.703 9 C 0.532 3.468 10 O -0.568 6.568 11 C -0.130 4.130 12 S -0.155 6.155 13 C -0.534 4.534 14 H 0.086 0.914 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 0.993 3.007 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.252 1.252 21 N -0.702 5.702 22 C 0.563 3.437 23 O -0.591 6.591 24 C -0.214 4.214 25 C -0.078 4.078 26 C -0.103 4.103 27 C -0.128 4.128 28 C -0.083 4.083 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.407 0.593 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.269 0.731 41 H 0.407 0.593 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.671 -8.775 -4.362 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.032 3.968 3 H 0.072 0.928 4 C -0.156 4.156 5 C 0.034 3.966 6 H 0.071 0.929 7 C -0.215 4.215 8 N -0.359 5.359 9 C 0.318 3.682 10 O -0.446 6.446 11 C -0.281 4.281 12 S 0.072 5.928 13 C -0.682 4.682 14 H 0.104 0.896 15 C -0.191 4.191 16 N -0.552 5.552 17 Si 0.815 3.185 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.175 1.175 21 N -0.355 5.355 22 C 0.352 3.648 23 O -0.473 6.473 24 C -0.217 4.217 25 C -0.098 4.098 26 C -0.140 4.140 27 C -0.166 4.166 28 C -0.119 4.119 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.245 0.755 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.245 0.755 42 H 0.141 0.859 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.119 0.881 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.742 -6.387 -5.247 24.198 hybrid contribution 0.300 -1.346 1.614 2.123 sum -22.442 -7.732 -3.633 24.013 Atomic orbital electron populations 1.22091 0.93393 1.03364 1.02262 1.21088 0.95101 0.96499 0.84100 0.92760 1.22227 0.91599 1.03797 0.97933 1.21088 0.93816 0.96003 0.85711 0.92856 1.22121 1.00350 1.02489 0.96509 1.45934 1.17066 1.37989 1.34895 1.20100 0.81803 0.82787 0.83495 1.90690 1.62187 1.31867 1.59828 1.23439 1.01298 1.03740 0.99599 1.85727 1.14799 1.49303 1.42992 1.23146 1.06296 1.20877 1.17894 0.89551 1.26086 0.95309 0.97037 1.00631 1.70201 1.09916 1.32837 1.42199 0.85029 0.78746 0.77674 0.77060 1.19425 1.20853 1.17508 1.45947 1.66504 1.14038 1.08972 1.18302 0.76516 0.85783 0.84176 1.90750 1.52856 1.17676 1.86016 1.21983 1.07306 0.98663 0.93736 1.24270 0.91506 0.99299 0.94680 1.21503 1.01194 0.94070 0.97189 1.22482 0.99219 0.99352 0.95501 1.21304 1.00719 0.90883 0.99034 0.90174 0.94725 0.89751 0.87213 0.85860 0.90155 0.89574 0.95388 0.75498 0.87547 0.87103 0.92241 0.75466 0.85924 0.87215 0.90646 0.88120 0.92848 0.90814 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.48 71.98 0.68 -1.41 16 2 C 0.14 2.38 2.57 44.99 0.12 2.50 16 3 H 0.05 1.39 7.58 -2.39 -0.02 1.37 16 4 C -0.12 -1.28 4.43 30.59 0.14 -1.15 16 5 C 0.14 2.79 2.57 44.99 0.12 2.90 16 6 H 0.05 1.51 7.58 -2.39 -0.02 1.50 16 7 C -0.16 -2.82 9.48 71.98 0.68 -2.13 16 8 N -0.70 -16.37 3.80 -442.55 -1.68 -18.05 16 9 C 0.53 19.50 7.81 87.66 0.68 20.18 16 10 O -0.57 -26.93 15.52 -3.02 -0.05 -26.98 16 11 C -0.13 -5.02 6.15 71.24 0.44 -4.58 16 12 S -0.16 -8.59 20.57 -56.49 -1.16 -9.76 16 13 C -0.53 -29.65 9.50 67.95 0.65 -29.00 16 14 H 0.09 4.36 7.80 -2.91 -0.02 4.34 16 15 C 0.01 0.77 5.49 84.86 0.47 1.24 16 16 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 17 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 21 N -0.70 -13.61 3.79 -446.16 -1.69 -15.31 16 22 C 0.56 15.95 7.76 86.57 0.67 16.62 16 23 O -0.59 -22.07 16.43 -4.08 -0.07 -22.14 16 24 C -0.21 -5.39 6.09 -18.57 -0.11 -5.50 16 25 C -0.08 -2.02 10.43 24.65 0.26 -1.76 16 26 C -0.10 -2.15 6.80 30.52 0.21 -1.94 16 27 C -0.13 -2.68 7.16 31.68 0.23 -2.46 16 28 C -0.08 -1.51 5.83 30.52 0.18 -1.34 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.41 6.30 6.51 -92.71 -0.60 5.70 16 38 H 0.11 3.77 6.25 -2.39 -0.01 3.75 16 39 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.41 5.38 5.51 -92.71 -0.51 4.87 16 42 H 0.12 3.41 8.03 -2.91 -0.02 3.38 16 43 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.29 6.17 -2.39 -0.01 1.27 16 48 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -86.50 403.52 2.91 -83.59 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.15 Total: 27.69 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 5.40 Total: -7.82 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -3.09 Total: -89.33 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.11 Total: -49.12 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -86.50 2.91 -83.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.129 kcal (2) G-P(sol) polarization free energy of solvation -86.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds