Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46900 * 2 1 4 4 C 1.53007 * 109.46844 * 240.00444 * 2 1 3 5 5 C 1.53001 * 109.46760 * 174.99810 * 4 2 1 6 6 H 1.09002 * 109.47459 * 55.00171 * 5 4 2 7 7 C 1.52999 * 109.46846 * 174.99626 * 5 4 2 8 8 N 1.46494 * 109.47197 * 294.99594 * 5 4 2 9 9 C 1.34781 * 119.99896 * 155.00279 * 8 5 4 10 10 O 1.21615 * 120.00065 * 359.97438 * 9 8 5 11 11 C 1.47098 * 120.00071 * 180.02562 * 9 8 5 12 12 C 1.32613 * 124.61994 * 179.97438 * 11 9 8 13 13 C 1.51118 * 110.75748 * 180.02562 * 12 11 9 14 14 C 1.54573 * 104.83991 * 343.40029 * 13 12 11 15 15 C 1.51116 * 124.62074 * 359.97438 * 11 9 8 16 16 N 1.46501 * 109.47274 * 120.00528 * 2 1 3 17 17 C 1.34777 * 119.99336 * 274.99790 * 16 2 1 18 18 O 1.21274 * 120.00422 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99734 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.47143 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99800 * 179.97438 * 20 19 17 22 22 H 1.07993 * 120.00227 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99560 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00448 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 119.99710 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46685 * 60.00304 * 25 23 21 27 27 H 1.48503 * 109.46876 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47161 * 300.00167 * 25 23 21 29 29 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47204 * 299.99599 * 1 2 3 31 31 H 1.08995 * 109.47352 * 60.00245 * 1 2 3 32 32 H 1.08994 * 109.47608 * 54.99804 * 4 2 1 33 33 H 1.09002 * 109.46876 * 294.99651 * 4 2 1 34 34 H 1.09002 * 109.47469 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47498 * 300.00106 * 7 5 4 36 36 H 1.09000 * 109.47375 * 60.00151 * 7 5 4 37 37 H 0.96994 * 120.00177 * 335.00702 * 8 5 4 38 38 H 1.07997 * 124.62333 * 0.02562 * 12 11 9 39 39 H 1.08997 * 110.36305 * 224.55752 * 13 12 11 40 40 H 1.08998 * 110.45798 * 102.28746 * 13 12 11 41 41 H 1.09004 * 110.98375 * 266.92582 * 14 13 12 42 42 H 1.08999 * 110.98692 * 143.13044 * 14 13 12 43 43 H 1.08998 * 110.36323 * 77.73779 * 15 11 9 44 44 H 1.08997 * 110.36208 * 315.42120 * 15 11 9 45 45 H 0.96993 * 119.99954 * 94.99988 * 16 2 1 46 46 H 1.09000 * 109.46606 * 299.99957 * 19 17 16 47 47 H 1.08999 * 109.47188 * 59.99709 * 19 17 16 48 48 H 0.97001 * 120.00305 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3870 7 6 4.0851 -1.4382 -2.4926 8 7 3.9478 0.7895 -1.4926 9 6 5.1611 1.2136 -1.0869 10 8 5.9377 0.4321 -0.5720 11 6 5.5456 2.6221 -1.2658 12 6 6.7120 3.1369 -0.9010 13 6 6.7736 4.6105 -1.2304 14 6 5.6260 4.8387 -2.2405 15 6 4.6652 3.6797 -1.8904 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8582 1.1582 2.4117 19 6 2.6500 -0.7286 3.5874 20 16 2.7101 0.4341 4.9732 21 6 3.3134 -0.6311 6.2404 22 1 3.5228 -1.6675 6.0204 23 6 3.5194 -0.1383 7.5215 24 7 3.2646 1.1250 7.7896 25 14 4.1583 -1.2678 8.8652 26 1 5.4848 -1.8059 8.4702 27 1 4.2917 -0.5041 10.1318 28 1 3.2070 -2.3909 9.0616 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2617 -2.1371 33 1 1.7516 -1.7715 -1.2057 34 1 5.1714 -1.3616 -2.5383 35 1 3.8000 -2.4818 -2.3597 36 1 3.6545 -1.0592 -3.4195 37 1 3.3283 1.4129 -1.9028 38 1 7.5093 2.5791 -0.4325 39 1 7.7332 4.8579 -1.6842 40 1 6.6137 5.2084 -0.3332 41 1 5.9854 4.7511 -3.2658 42 1 5.1485 5.8048 -2.0771 43 1 3.9112 4.0146 -1.1781 44 1 4.1911 3.2940 -2.7928 45 1 2.2491 -1.6318 1.1524 46 1 1.9778 -1.5509 3.8324 47 1 3.6493 -1.1205 3.3978 48 1 3.4083 1.4693 8.6850 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681538330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = -79.358890 kcal Electronic energy + Delta-G solvation = -27457.233169 eV Core-core repulsion = 23637.749428 eV Total energy + Delta-G solvation = -3819.483742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31462 -39.34940 -38.07690 -36.75097 -34.63890 -32.38852 -31.93777 -31.04831 -29.38929 -28.51286 -28.43104 -27.03190 -25.43963 -23.22096 -21.83335 -21.30142 -20.72042 -20.16687 -18.97281 -17.80158 -17.32093 -16.61352 -16.24745 -15.93065 -15.87886 -15.05446 -14.77113 -14.74322 -14.55362 -14.25340 -13.95156 -13.56812 -13.15749 -13.13080 -12.99907 -12.86443 -12.67342 -12.55247 -12.39816 -12.28929 -12.14772 -11.91091 -11.87518 -11.56620 -11.45853 -11.41284 -11.12123 -11.00542 -10.99868 -10.91155 -10.72704 -9.94324 -9.78121 -9.32406 -9.26543 -9.04574 -9.02220 -8.84543 -8.19429 -6.44834 -6.17530 -3.87436 1.28197 3.03953 3.10836 3.16844 3.26665 3.26751 3.30371 3.35061 3.77256 4.23964 4.24699 4.30260 4.36765 4.59537 4.71609 4.82565 4.87301 5.07063 5.12637 5.17467 5.18315 5.24827 5.28784 5.36362 5.39068 5.46401 5.46951 5.48634 5.52024 5.55666 5.62463 5.68465 5.71194 5.83313 5.91034 5.95140 5.97354 6.03864 6.13798 6.18922 6.21174 6.36417 6.38650 6.72396 7.41379 7.63446 7.76753 8.18488 8.39273 8.68229 9.27713 10.89886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.002970 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.109900 B = 9426.493961 C =10876.947010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.139 3.861 6 H 0.093 0.907 7 C -0.162 4.162 8 N -0.720 5.720 9 C 0.569 3.431 10 O -0.538 6.538 11 C -0.198 4.198 12 C -0.070 4.070 13 C -0.109 4.109 14 C -0.122 4.122 15 C -0.090 4.090 16 N -0.733 5.733 17 C 0.535 3.465 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.398 0.602 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.396 0.604 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 0.639 -26.355 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.111 0.889 7 C -0.221 4.221 8 N -0.371 5.371 9 C 0.358 3.642 10 O -0.416 6.416 11 C -0.201 4.201 12 C -0.090 4.090 13 C -0.146 4.146 14 C -0.160 4.160 15 C -0.127 4.127 16 N -0.388 5.388 17 C 0.321 3.679 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.156 0.844 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.230 0.770 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.022 2.189 -25.760 25.853 hybrid contribution 0.515 -2.341 0.656 2.485 sum 0.537 -0.153 -25.104 25.110 Atomic orbital electron populations 1.22190 0.95349 1.02063 1.02619 1.20870 0.93824 0.97798 0.83790 0.89417 1.22246 0.94438 1.02454 0.98231 1.20987 0.94206 0.81356 0.99975 0.88871 1.22177 1.02141 0.99850 0.97892 1.45901 1.16905 1.11058 1.63276 1.17958 0.81567 0.87322 0.77403 1.90807 1.51306 1.56166 1.43282 1.21798 0.97981 0.93534 1.06737 1.24074 0.96348 0.95720 0.92816 1.21499 0.99683 0.93446 0.99925 1.22413 0.95870 0.98497 0.99187 1.21239 0.97863 0.93547 1.00094 1.46069 1.69384 1.13785 1.09526 1.20263 0.76647 0.87201 0.83769 1.90679 1.48375 1.15727 1.84436 1.23537 1.03649 1.04825 0.98468 1.85339 1.86217 1.13059 0.98667 1.22835 1.50997 0.98128 0.96371 0.91019 1.24980 0.95103 0.95528 0.97925 1.70008 1.45618 1.13212 1.21542 0.86236 0.79361 0.80030 0.79955 1.19920 1.20818 1.19957 0.92543 0.91604 0.92027 0.89900 0.89624 0.92004 0.91567 0.92540 0.76728 0.84418 0.90272 0.89313 0.90970 0.90439 0.89973 0.91111 0.77005 0.89341 0.89305 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.56 2.52 -67.93 -0.17 1.39 16 3 H 0.09 1.16 7.06 -51.93 -0.37 0.79 16 4 C -0.14 -1.00 4.29 -26.73 -0.11 -1.11 16 5 C 0.14 1.34 2.52 -67.93 -0.17 1.17 16 6 H 0.09 1.17 7.05 -51.93 -0.37 0.81 16 7 C -0.16 -1.33 9.48 37.16 0.35 -0.98 16 8 N -0.72 -7.39 4.44 -54.99 -0.24 -7.64 16 9 C 0.57 7.74 7.76 -12.66 -0.10 7.65 16 10 O -0.54 -9.47 16.43 5.26 0.09 -9.39 16 11 C -0.20 -2.26 6.09 -102.73 -0.63 -2.89 16 12 C -0.07 -0.77 10.43 -36.00 -0.38 -1.14 16 13 C -0.11 -0.87 6.80 -26.85 -0.18 -1.05 16 14 C -0.12 -0.84 7.16 -25.08 -0.18 -1.02 16 15 C -0.09 -0.74 6.02 -26.86 -0.16 -0.90 16 16 N -0.73 -9.84 4.45 -53.80 -0.24 -10.08 16 17 C 0.53 10.23 7.81 -10.98 -0.09 10.15 16 18 O -0.52 -11.84 15.52 5.56 0.09 -11.76 16 19 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.54 -15.66 9.50 30.94 0.29 -15.36 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 24 N -0.87 -26.66 13.22 55.49 0.73 -25.92 16 25 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 3.10 7.61 -40.82 -0.31 2.79 16 38 H 0.14 1.59 8.03 -52.49 -0.42 1.17 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.45 7.83 -51.93 -0.41 0.05 16 45 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 46 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 47 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 48 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 411.46 15.07 6.20 6.20 Total: -1.00 -37.64 411.46 -9.76 -47.40 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.11 Total: 4.59 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.04 Total: -6.41 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.25 Total: -43.64 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.64 -9.76 -47.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.957 kcal (2) G-P(sol) polarization free energy of solvation -37.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds