Wall clock time and date at job start Sat Apr 11 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46900 * 2 1 4 4 C 1.53007 * 109.46844 * 240.00444 * 2 1 3 5 5 C 1.53001 * 109.46760 * 174.99810 * 4 2 1 6 6 H 1.09002 * 109.47459 * 55.00171 * 5 4 2 7 7 C 1.52999 * 109.46846 * 174.99626 * 5 4 2 8 8 N 1.46494 * 109.47197 * 294.99594 * 5 4 2 9 9 C 1.34781 * 119.99896 * 155.00279 * 8 5 4 10 10 O 1.21615 * 120.00065 * 359.97438 * 9 8 5 11 11 C 1.47098 * 120.00071 * 180.02562 * 9 8 5 12 12 C 1.32613 * 124.61994 * 179.97438 * 11 9 8 13 13 C 1.51118 * 110.75748 * 180.02562 * 12 11 9 14 14 C 1.54573 * 104.83991 * 343.40029 * 13 12 11 15 15 C 1.51116 * 124.62074 * 359.97438 * 11 9 8 16 16 N 1.46501 * 109.47274 * 120.00528 * 2 1 3 17 17 C 1.34777 * 119.99336 * 274.99790 * 16 2 1 18 18 O 1.21274 * 120.00422 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99734 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.47143 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99800 * 179.97438 * 20 19 17 22 22 H 1.07993 * 120.00227 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99560 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00448 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 119.99710 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46685 * 60.00304 * 25 23 21 27 27 H 1.48503 * 109.46876 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47161 * 300.00167 * 25 23 21 29 29 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47204 * 299.99599 * 1 2 3 31 31 H 1.08995 * 109.47352 * 60.00245 * 1 2 3 32 32 H 1.08994 * 109.47608 * 54.99804 * 4 2 1 33 33 H 1.09002 * 109.46876 * 294.99651 * 4 2 1 34 34 H 1.09002 * 109.47469 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47498 * 300.00106 * 7 5 4 36 36 H 1.09000 * 109.47375 * 60.00151 * 7 5 4 37 37 H 0.96994 * 120.00177 * 335.00702 * 8 5 4 38 38 H 1.07997 * 124.62333 * 0.02562 * 12 11 9 39 39 H 1.08997 * 110.36305 * 224.55752 * 13 12 11 40 40 H 1.08998 * 110.45798 * 102.28746 * 13 12 11 41 41 H 1.09004 * 110.98375 * 266.92582 * 14 13 12 42 42 H 1.08999 * 110.98692 * 143.13044 * 14 13 12 43 43 H 1.08998 * 110.36323 * 77.73779 * 15 11 9 44 44 H 1.08997 * 110.36208 * 315.42120 * 15 11 9 45 45 H 0.96993 * 119.99954 * 94.99988 * 16 2 1 46 46 H 1.09000 * 109.46606 * 299.99957 * 19 17 16 47 47 H 1.08999 * 109.47188 * 59.99709 * 19 17 16 48 48 H 0.97001 * 120.00305 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3870 7 6 4.0851 -1.4382 -2.4926 8 7 3.9478 0.7895 -1.4926 9 6 5.1611 1.2136 -1.0869 10 8 5.9377 0.4321 -0.5720 11 6 5.5456 2.6221 -1.2658 12 6 6.7120 3.1369 -0.9010 13 6 6.7736 4.6105 -1.2304 14 6 5.6260 4.8387 -2.2405 15 6 4.6652 3.6797 -1.8904 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8582 1.1582 2.4117 19 6 2.6500 -0.7286 3.5874 20 16 2.7101 0.4341 4.9732 21 6 3.3134 -0.6311 6.2404 22 1 3.5228 -1.6675 6.0204 23 6 3.5194 -0.1383 7.5215 24 7 3.2646 1.1250 7.7896 25 14 4.1583 -1.2678 8.8652 26 1 5.4848 -1.8059 8.4702 27 1 4.2917 -0.5041 10.1318 28 1 3.2070 -2.3909 9.0616 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2617 -2.1371 33 1 1.7516 -1.7715 -1.2057 34 1 5.1714 -1.3616 -2.5383 35 1 3.8000 -2.4818 -2.3597 36 1 3.6545 -1.0592 -3.4195 37 1 3.3283 1.4129 -1.9028 38 1 7.5093 2.5791 -0.4325 39 1 7.7332 4.8579 -1.6842 40 1 6.6137 5.2084 -0.3332 41 1 5.9854 4.7511 -3.2658 42 1 5.1485 5.8048 -2.0771 43 1 3.9112 4.0146 -1.1781 44 1 4.1911 3.2940 -2.7928 45 1 2.2491 -1.6318 1.1524 46 1 1.9778 -1.5509 3.8324 47 1 3.6493 -1.1205 3.3978 48 1 3.4083 1.4693 8.6850 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681538330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:14 Heat of formation + Delta-G solvation = -105.703257 kcal Electronic energy + Delta-G solvation = -27458.375547 eV Core-core repulsion = 23637.749428 eV Total energy + Delta-G solvation = -3820.626119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30366 -40.65999 -38.90560 -37.82971 -35.76185 -34.61227 -33.07728 -32.06946 -30.15397 -29.97277 -29.13941 -27.75495 -27.67639 -24.09356 -22.84462 -22.11485 -21.67735 -21.27090 -19.98887 -19.73127 -18.21135 -17.89211 -17.50452 -17.06841 -16.90443 -16.58836 -16.40241 -15.93431 -15.82004 -15.45207 -15.09189 -14.79340 -14.54003 -14.44017 -13.92172 -13.73422 -13.62197 -13.60668 -13.32814 -13.20206 -13.12093 -12.99574 -12.89184 -12.87004 -12.64029 -12.63151 -12.42845 -12.07895 -12.02764 -11.95031 -11.76640 -11.71916 -11.15611 -11.00232 -10.90811 -10.32473 -10.20491 -10.08866 -9.83745 -8.69326 -8.37042 -6.15396 0.35877 1.24504 1.41483 1.44003 1.54660 1.62299 2.18713 2.24697 2.30230 2.33159 2.96639 3.29712 3.49646 3.57107 3.63329 3.82643 3.99763 4.08553 4.14603 4.18874 4.24297 4.29039 4.37558 4.45151 4.45603 4.51086 4.72060 4.74735 4.77345 4.79993 4.84302 4.84997 4.92154 4.94939 5.09459 5.14228 5.15434 5.29036 5.33457 5.35419 5.36440 5.38304 5.49413 5.52147 5.62179 6.16787 6.50947 6.54262 7.03697 7.22727 7.26337 8.72104 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.002970 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.109900 B = 9426.493961 C =10876.947010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.063 0.937 4 C -0.119 4.119 5 C 0.133 3.867 6 H 0.059 0.941 7 C -0.154 4.154 8 N -0.705 5.705 9 C 0.557 3.443 10 O -0.592 6.592 11 C -0.216 4.216 12 C -0.083 4.083 13 C -0.107 4.107 14 C -0.116 4.116 15 C -0.086 4.086 16 N -0.709 5.709 17 C 0.535 3.465 18 O -0.563 6.563 19 C -0.132 4.132 20 S -0.147 6.147 21 C -0.550 4.550 22 H 0.080 0.920 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.998 3.002 26 H -0.264 1.264 27 H -0.276 1.276 28 H -0.260 1.260 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.032 0.968 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.412 0.588 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -0.830 -28.737 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.082 0.918 4 C -0.157 4.157 5 C 0.029 3.971 6 H 0.077 0.923 7 C -0.212 4.212 8 N -0.357 5.357 9 C 0.346 3.654 10 O -0.474 6.474 11 C -0.219 4.219 12 C -0.103 4.103 13 C -0.143 4.143 14 C -0.153 4.153 15 C -0.123 4.123 16 N -0.363 5.363 17 C 0.320 3.680 18 O -0.441 6.441 19 C -0.284 4.284 20 S 0.080 5.920 21 C -0.698 4.698 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.189 1.189 27 H -0.201 1.201 28 H -0.185 1.185 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.249 0.751 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.053 0.689 -28.215 28.243 hybrid contribution 0.822 -1.924 1.284 2.455 sum -0.230 -1.235 -26.931 26.960 Atomic orbital electron populations 1.22134 0.94079 1.03123 1.02237 1.21128 0.94731 0.96942 0.83905 0.91839 1.22221 0.92224 1.03977 0.97243 1.21100 0.95799 0.80911 0.99286 0.92288 1.22100 1.00302 1.00793 0.98012 1.45866 1.15984 1.11880 1.61937 1.18450 0.82047 0.87995 0.76892 1.90766 1.53031 1.57657 1.45970 1.22069 0.98987 0.93294 1.07561 1.24333 0.95931 0.97629 0.92371 1.21554 1.01328 0.90954 1.00490 1.22443 0.94853 0.98517 0.99467 1.21277 0.97501 0.92974 1.00542 1.45892 1.67403 1.14400 1.08585 1.19953 0.76685 0.86625 0.84724 1.90663 1.50735 1.17501 1.85199 1.23390 1.04885 1.03419 0.96661 1.85476 1.86591 1.17388 1.02526 1.23172 1.51297 0.98401 0.96938 0.90201 1.26133 0.94963 0.97268 1.00687 1.70172 1.46694 1.15440 1.22344 0.85011 0.79017 0.77810 0.76197 1.18918 1.20066 1.18461 0.90700 0.95374 0.89067 0.86374 0.86879 0.94876 0.89699 0.90285 0.75067 0.86294 0.88576 0.89366 0.89497 0.88948 0.90551 0.88861 0.75135 0.87235 0.88488 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.48 71.98 0.68 -2.13 16 2 C 0.14 2.74 2.52 44.99 0.11 2.86 16 3 H 0.06 1.63 7.06 -2.39 -0.02 1.62 16 4 C -0.12 -1.31 4.29 30.60 0.13 -1.17 16 5 C 0.13 2.35 2.52 44.99 0.11 2.47 16 6 H 0.06 1.48 7.05 -2.39 -0.02 1.46 16 7 C -0.15 -2.19 9.48 71.98 0.68 -1.50 16 8 N -0.71 -14.03 4.44 -446.14 -1.98 -16.02 16 9 C 0.56 15.79 7.76 86.57 0.67 16.46 16 10 O -0.59 -22.37 16.43 -4.08 -0.07 -22.44 16 11 C -0.22 -5.09 6.09 -18.57 -0.11 -5.20 16 12 C -0.08 -1.92 10.43 24.66 0.26 -1.66 16 13 C -0.11 -1.64 6.80 30.52 0.21 -1.44 16 14 C -0.12 -1.37 7.16 31.66 0.23 -1.14 16 15 C -0.09 -1.31 6.02 30.51 0.18 -1.13 16 16 N -0.71 -18.33 4.45 -442.52 -1.97 -20.30 16 17 C 0.53 20.80 7.81 87.66 0.68 21.48 16 18 O -0.56 -26.81 15.52 -3.01 -0.05 -26.86 16 19 C -0.13 -5.66 6.16 71.24 0.44 -5.22 16 20 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 21 C -0.55 -32.78 9.50 67.95 0.65 -32.14 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.84 5.49 84.86 0.47 1.31 16 24 N -0.91 -57.32 13.22 21.65 0.29 -57.04 16 25 Si 1.00 45.00 29.55 68.60 2.03 47.03 16 26 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.41 5.69 7.61 -92.71 -0.71 4.99 16 38 H 0.12 3.09 8.03 -2.91 -0.02 3.07 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.09 0.97 7.83 -2.39 -0.02 0.95 16 45 H 0.41 8.11 8.60 -92.71 -0.80 7.31 16 46 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 47 H 0.10 3.97 8.14 -2.40 -0.02 3.95 16 48 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -88.94 411.46 1.94 -87.00 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.54 Total: 26.48 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.39 Total: -8.16 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.66 Total: -93.35 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.11 Total: -49.29 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -88.94 1.94 -87.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681538330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.703 kcal (2) G-P(sol) polarization free energy of solvation -88.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds