Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46895 * 2 1 4 4 C 1.50706 * 109.46792 * 240.00570 * 2 1 3 5 5 O 1.21287 * 119.99688 * 263.40669 * 4 2 1 6 6 N 1.34767 * 120.00100 * 83.40946 * 4 2 1 7 7 C 1.46921 * 120.63363 * 4.67889 * 6 4 2 8 8 C 1.52757 * 109.01197 * 233.58309 * 7 6 4 9 9 C 1.53040 * 109.38418 * 305.58687 * 8 7 6 10 10 N 1.46503 * 109.45445 * 181.25026 * 9 8 7 11 11 C 1.34777 * 119.99764 * 84.93480 * 10 9 8 12 12 O 1.21279 * 120.00082 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99809 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.46992 * 180.02562 * 13 11 10 15 15 C 1.76200 * 99.99818 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.38803 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99978 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99999 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47455 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47137 * 120.00261 * 19 17 15 22 22 H 1.48505 * 109.47399 * 240.00177 * 19 17 15 23 23 C 1.53043 * 109.53962 * 61.23606 * 9 8 7 24 24 C 1.46929 * 120.63263 * 184.95237 * 6 4 2 25 25 C 1.52994 * 109.47231 * 120.00781 * 2 1 3 26 26 C 1.53009 * 117.49809 * 248.74713 * 25 2 1 27 27 C 1.53000 * 117.49934 * 180.08764 * 25 2 1 28 28 H 1.09004 * 109.47202 * 57.30294 * 1 2 3 29 29 H 1.09001 * 109.46983 * 297.30528 * 1 2 3 30 30 H 1.08999 * 109.47484 * 177.30139 * 1 2 3 31 31 H 1.08997 * 109.58715 * 353.41672 * 7 6 4 32 32 H 1.08999 * 109.59126 * 113.84442 * 7 6 4 33 33 H 1.09001 * 109.57237 * 185.55095 * 8 7 6 34 34 H 1.09000 * 109.36298 * 65.49193 * 8 7 6 35 35 H 1.09003 * 109.46212 * 301.21819 * 9 8 7 36 36 H 0.96999 * 120.00140 * 264.93954 * 10 9 8 37 37 H 1.08997 * 109.46702 * 300.00259 * 13 11 10 38 38 H 1.09000 * 109.46864 * 60.00096 * 13 11 10 39 39 H 0.96997 * 119.99845 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.49975 * 178.68874 * 23 9 8 41 41 H 1.09004 * 109.52447 * 58.60433 * 23 9 8 42 42 H 1.08991 * 109.59064 * 246.15954 * 24 6 4 43 43 H 1.09000 * 109.58452 * 6.44441 * 24 6 4 44 44 H 1.09001 * 115.54940 * 34.41163 * 25 2 1 45 45 H 1.09000 * 117.49094 * 359.97438 * 26 25 2 46 46 H 1.08996 * 117.49813 * 145.02020 * 26 25 2 47 47 H 1.09003 * 117.49705 * 214.97612 * 27 25 2 48 48 H 1.08993 * 117.49906 * 359.97055 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3481 -1.8797 -1.1693 6 7 2.1305 -0.0461 -2.3991 7 6 1.8499 1.3944 -2.4673 8 6 0.8071 1.6473 -3.5546 9 6 1.2895 1.0376 -4.8727 10 7 0.3044 1.3051 -5.9235 11 6 0.3387 2.4713 -6.5982 12 8 1.1853 3.2991 -6.3358 13 6 -0.6751 2.7468 -7.6787 14 16 -0.3676 4.3817 -8.3918 15 6 -1.6584 4.4406 -9.5897 16 1 -2.3359 3.6062 -9.6951 17 6 -1.8039 5.5591 -10.3987 18 7 -0.9773 6.5756 -10.2714 19 14 -3.1718 5.6213 -11.6692 20 1 -3.9566 4.3618 -11.6139 21 1 -4.0632 6.7735 -11.3808 22 1 -2.5830 5.7779 -13.0235 23 6 1.4589 -0.4743 -4.7057 24 6 2.5146 -0.7500 -3.6303 25 6 2.0400 -0.7214 1.2491 26 6 2.7393 0.1229 2.3165 27 6 3.5550 -0.8264 1.4351 28 1 -0.3634 0.5552 -0.8648 29 1 -0.3633 0.4714 0.9132 30 1 -0.3634 -1.0265 -0.0484 31 1 1.4650 1.7376 -1.5070 32 1 2.7653 1.9340 -2.7104 33 1 0.6643 2.7205 -3.6810 34 1 -0.1368 1.1859 -3.2643 35 1 2.2457 1.4816 -5.1499 36 1 -0.3726 0.6429 -6.1337 37 1 -0.5906 1.9892 -8.4578 38 1 -1.6777 2.7188 -7.2519 39 1 -1.0792 7.3573 -10.8365 40 1 1.7801 -0.9111 -5.6513 41 1 0.5090 -0.9162 -4.4048 42 1 3.4852 -0.3889 -3.9701 43 1 2.5706 -1.8212 -3.4365 44 1 1.4318 -1.5596 1.5892 45 1 2.8364 1.1922 2.1284 46 1 2.5916 -0.1602 3.3586 47 1 3.9435 -1.7336 1.8980 48 1 4.1883 -0.3821 0.6674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687277582.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = -79.974916 kcal Electronic energy + Delta-G solvation = -27104.697579 eV Core-core repulsion = 23285.187125 eV Total energy + Delta-G solvation = -3819.510455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65464 -40.67031 -38.81505 -37.77616 -35.71187 -34.58059 -33.73428 -32.52898 -31.91851 -30.29404 -27.68061 -26.42927 -25.16216 -24.39797 -23.25696 -22.74033 -21.64772 -21.38917 -19.91771 -19.57291 -18.47862 -17.78436 -17.36503 -16.99093 -16.87413 -16.53608 -16.32693 -15.94229 -15.88873 -15.54292 -15.14209 -15.02039 -14.74590 -14.54899 -14.44202 -14.09863 -13.72245 -13.44806 -13.30932 -13.15404 -13.11034 -13.02740 -12.91562 -12.71556 -12.58126 -12.40847 -12.32211 -12.10013 -11.91210 -11.75541 -11.62441 -11.33820 -11.15553 -11.07019 -10.93221 -10.53443 -10.26270 -10.08371 -9.73387 -8.65226 -8.34707 -6.11935 1.27834 1.41348 1.47481 1.57362 1.61271 1.63680 1.91282 2.25579 2.30530 2.88525 2.99657 3.32425 3.51064 3.57447 3.68796 3.77156 3.91186 3.97753 3.99995 4.06155 4.16475 4.20339 4.26479 4.31961 4.33714 4.38835 4.50031 4.53575 4.60100 4.69362 4.75529 4.79010 4.81139 4.87295 4.88806 4.98535 5.04996 5.06097 5.16383 5.21946 5.24762 5.35148 5.42744 5.49770 5.51407 6.20369 6.35469 6.52855 7.07159 7.15419 7.26847 8.74609 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029969 B = 0.001843 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.066800 B =15187.753715 C =15412.509541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.111 0.889 4 C 0.519 3.481 5 O -0.575 6.575 6 N -0.611 5.611 7 C 0.110 3.890 8 C -0.140 4.140 9 C 0.146 3.854 10 N -0.710 5.710 11 C 0.537 3.463 12 O -0.561 6.561 13 C -0.132 4.132 14 S -0.149 6.149 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.997 3.003 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.127 4.127 24 C 0.114 3.886 25 C -0.143 4.143 26 C -0.160 4.160 27 C -0.185 4.185 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.271 0.729 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -16.608 22.616 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 H 0.129 0.871 4 C 0.309 3.691 5 O -0.454 6.454 6 N -0.344 5.344 7 C -0.013 4.013 8 C -0.180 4.180 9 C 0.041 3.959 10 N -0.363 5.363 11 C 0.323 3.677 12 O -0.439 6.439 13 C -0.283 4.283 14 S 0.079 5.921 15 C -0.694 4.694 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.819 3.181 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.165 4.165 24 C -0.009 4.009 25 C -0.162 4.162 26 C -0.196 4.196 27 C -0.222 4.222 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.252 0.748 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.109 0.891 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.697 -15.709 23.023 28.265 hybrid contribution -1.677 -0.869 -1.483 2.401 sum 3.020 -16.578 21.540 27.348 Atomic orbital electron populations 1.21715 0.90973 1.02628 1.04038 1.21001 0.98667 1.00163 0.90162 0.87128 1.21107 0.76386 0.86673 0.84922 1.90663 1.50827 1.18374 1.85505 1.48254 1.68054 1.09923 1.08142 1.21793 0.99133 0.79587 1.00750 1.22187 0.99805 1.01663 0.94305 1.20974 0.92187 0.96094 0.86649 1.45833 1.34861 1.18144 1.37471 1.19992 0.84220 0.81879 0.81596 1.90689 1.38755 1.46939 1.67487 1.23390 1.01946 1.02862 1.00078 1.85535 1.44297 1.17136 1.45176 1.23243 1.17115 1.06554 1.22487 0.89990 1.26106 0.99480 0.94097 0.99451 1.70182 1.38045 1.06730 1.39758 0.84923 0.77272 0.78816 0.77052 1.18089 1.19925 1.20015 1.22095 1.00783 0.93571 1.00078 1.21540 0.97572 0.98602 0.83178 1.22020 0.95369 1.02135 0.96672 1.23178 1.02224 0.97800 0.96438 1.22853 0.93806 1.02184 1.03334 0.91285 0.89415 0.92955 0.87024 0.90582 0.91441 0.90055 0.91161 0.74827 0.87444 0.87307 0.92008 0.88807 0.89966 0.90718 0.89358 0.87963 0.87525 0.87499 0.89090 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.04 71.98 0.65 -0.78 16 2 C -0.08 -1.03 2.03 -11.54 -0.02 -1.05 16 3 H 0.11 1.05 6.12 -2.39 -0.01 1.03 16 4 C 0.52 9.78 6.52 87.66 0.57 10.36 16 5 O -0.57 -15.20 15.43 -3.05 -0.05 -15.25 16 6 N -0.61 -9.81 2.98 -819.75 -2.44 -12.25 16 7 C 0.11 1.49 6.10 86.22 0.53 2.02 16 8 C -0.14 -2.38 5.63 30.53 0.17 -2.21 16 9 C 0.15 2.81 2.42 45.02 0.11 2.92 16 10 N -0.71 -15.86 5.08 -442.39 -2.25 -18.11 16 11 C 0.54 18.33 7.81 87.66 0.68 19.02 16 12 O -0.56 -24.19 15.52 -3.03 -0.05 -24.24 16 13 C -0.13 -4.96 6.16 71.24 0.44 -4.53 16 14 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 15 C -0.55 -30.69 9.50 67.96 0.65 -30.04 16 16 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 17 C 0.01 0.76 5.49 84.86 0.47 1.22 16 18 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 19 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C -0.13 -1.79 5.55 30.67 0.17 -1.62 16 24 C 0.11 1.81 6.42 86.36 0.55 2.37 16 25 C -0.14 -2.03 4.60 -10.79 -0.05 -2.08 16 26 C -0.16 -1.67 10.18 30.62 0.31 -1.36 16 27 C -0.18 -2.80 9.63 30.62 0.29 -2.51 16 28 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 1.04 5.09 -2.39 -0.01 1.03 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.70 7.58 -2.39 -0.02 1.69 16 36 H 0.41 6.64 8.60 -92.71 -0.80 5.85 16 37 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 38 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 1.61 7.03 -2.39 -0.02 1.59 16 44 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 45 H 0.11 0.87 8.05 -2.39 -0.02 0.85 16 46 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -78.39 400.96 2.05 -76.34 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.16 Total: 20.85 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.52 Total: -8.25 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.40 Total: -85.32 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.09 Total: -39.49 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -78.39 2.05 -76.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687277582.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.635 kcal (2) G-P(sol) polarization free energy of solvation -78.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds