Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.51269 * 120.84868 * 2 1 4 4 C 1.53222 * 108.53663 * 231.31983 * 3 2 1 5 5 C 1.52956 * 109.41029 * 305.37505 * 4 3 2 6 6 C 1.50698 * 109.41667 * 183.70115 * 5 4 3 7 7 O 1.21274 * 120.00124 * 359.86190 * 6 5 4 8 8 N 1.34783 * 119.99713 * 179.85696 * 6 5 4 9 9 C 1.46497 * 119.99701 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47174 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47283 * 65.00075 * 10 9 8 12 12 C 1.52998 * 109.47292 * 185.00006 * 10 9 8 13 13 N 1.46496 * 109.47246 * 305.00324 * 10 9 8 14 14 C 1.34777 * 120.00258 * 155.00083 * 13 10 9 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 10 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 10 17 17 S 1.81003 * 109.46853 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99846 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00457 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 89.99660 * 22 20 18 24 24 H 1.48495 * 109.47496 * 209.99879 * 22 20 18 25 25 H 1.48500 * 109.46916 * 330.00121 * 22 20 18 26 26 C 1.52964 * 109.75718 * 63.62870 * 5 4 3 27 27 C 1.51266 * 120.85006 * 179.97438 * 2 1 3 28 28 H 1.07998 * 120.00101 * 0.02562 * 1 2 3 29 29 H 1.07992 * 119.99903 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.62725 * 111.60834 * 3 2 1 31 31 H 1.09003 * 109.62688 * 351.04003 * 3 2 1 32 32 H 1.09001 * 109.48705 * 185.39109 * 4 3 2 33 33 H 1.09004 * 109.48375 * 65.35749 * 4 3 2 34 34 H 1.09003 * 109.41432 * 303.56326 * 5 4 3 35 35 H 0.96998 * 120.00048 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.46987 * 60.00085 * 9 8 6 37 37 H 1.09006 * 109.47173 * 299.99977 * 9 8 6 38 38 H 1.08994 * 109.47090 * 60.00118 * 12 10 9 39 39 H 1.09001 * 109.47093 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.47121 * 299.99938 * 12 10 9 41 41 H 0.96999 * 119.99694 * 334.99473 * 13 10 9 42 42 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 43 43 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 44 44 H 0.97002 * 120.00245 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.48329 * 56.35241 * 26 5 4 46 46 H 1.08999 * 109.48124 * 176.38982 * 26 5 4 47 47 H 1.08999 * 109.62854 * 248.39328 * 27 2 1 48 48 H 1.08999 * 109.62679 * 8.77424 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1149 1.2513 -1.1341 5 6 3.9812 -0.0002 -0.9824 6 6 5.0512 -0.0004 -2.0436 7 8 5.1124 0.9093 -2.8432 8 7 5.9402 -1.0116 -2.1038 9 6 6.9808 -1.0116 -3.1350 10 6 7.8498 -2.2616 -2.9828 11 1 7.2481 -3.1487 -3.1804 12 6 9.0102 -2.2004 -3.9780 13 7 8.3795 -2.3248 -1.6184 14 6 8.7294 -3.5124 -1.0857 15 8 8.6053 -4.5287 -1.7357 16 6 9.2748 -3.5773 0.3177 17 16 9.6474 -5.2972 0.7412 18 6 10.2510 -5.0842 2.3828 19 1 10.2973 -4.0965 2.8172 20 6 10.6678 -6.1857 3.1173 21 7 11.1183 -6.0266 4.3439 22 14 10.5898 -7.8938 2.3652 23 1 11.8679 -8.1867 1.6682 24 1 10.3695 -8.8972 3.4374 25 1 9.4699 -7.9553 1.3919 26 6 3.1138 -1.2509 -1.1347 27 6 2.0857 -1.2986 0.0006 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9352 -0.0004 30 1 2.5980 1.4192 0.9546 31 1 1.4027 2.1331 -0.1599 32 1 3.7467 2.1384 -1.0890 33 1 2.5979 1.2216 -2.0932 34 1 4.4478 -0.0006 0.0027 35 1 5.8911 -1.7394 -1.4645 36 1 7.6009 -0.1219 -3.0254 37 1 6.5155 -1.0109 -4.1208 38 1 9.6119 -1.3133 -3.7804 39 1 9.6290 -3.0911 -3.8698 40 1 8.6161 -2.1533 -4.9932 41 1 8.4785 -1.5120 -1.0984 42 1 10.1854 -2.9816 0.3816 43 1 8.5340 -3.1843 1.0140 44 1 11.4093 -6.7964 4.8574 45 1 2.5968 -1.2203 -2.0938 46 1 3.7449 -2.1385 -1.0899 47 1 2.5980 -1.4187 0.9551 48 1 1.4024 -2.1333 -0.1557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689405817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = -85.560675 kcal Electronic energy + Delta-G solvation = -26883.746149 eV Core-core repulsion = 23063.993478 eV Total energy + Delta-G solvation = -3819.752671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60094 -39.58030 -38.18380 -36.45876 -34.01650 -33.14776 -32.48394 -31.64450 -31.33598 -28.80714 -27.73361 -25.96405 -25.65699 -23.33821 -22.37299 -21.86812 -20.52997 -20.29034 -18.78432 -18.07222 -17.48068 -16.75537 -16.57258 -15.97185 -15.45583 -15.21468 -15.13401 -15.00619 -14.97742 -14.37421 -14.16835 -13.89805 -13.77445 -13.52237 -13.31075 -13.10659 -12.93082 -12.83926 -12.70116 -12.63114 -12.21883 -12.07586 -11.94642 -11.75849 -11.42805 -11.31509 -11.26622 -11.05147 -10.98602 -10.65607 -10.55853 -10.02196 -9.90586 -9.64327 -9.39853 -9.35162 -9.17302 -9.04279 -8.56100 -6.97535 -6.33327 -4.05687 1.91074 2.36117 2.65901 2.81148 2.89523 3.24067 3.29929 3.45989 3.58481 4.17275 4.28037 4.28547 4.32251 4.41291 4.63085 4.67330 4.70929 4.82256 4.86764 4.96386 5.02190 5.03132 5.05791 5.17991 5.18428 5.28357 5.32635 5.37881 5.43345 5.50278 5.54104 5.56630 5.68071 5.69423 5.70874 5.79380 5.80638 5.92215 5.93783 5.99057 6.13486 6.30832 6.42505 6.53028 7.17345 7.47608 7.89629 7.92651 8.36726 8.37480 9.12678 10.75880 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010927 B = 0.002475 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.780787 B =11311.194950 C =13091.202103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.094 4.094 5 C -0.108 4.108 6 C 0.519 3.481 7 O -0.541 6.541 8 N -0.730 5.730 9 C 0.112 3.888 10 C 0.132 3.868 11 H 0.095 0.905 12 C -0.162 4.162 13 N -0.735 5.735 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.107 4.107 27 C -0.086 4.086 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 14.498 -12.219 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.132 4.132 5 C -0.129 4.129 6 C 0.305 3.695 7 O -0.418 6.418 8 N -0.382 5.382 9 C -0.012 4.012 10 C 0.027 3.973 11 H 0.113 0.887 12 C -0.220 4.220 13 N -0.391 5.391 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.276 4.276 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.145 4.145 27 C -0.123 4.123 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.956 13.367 -13.734 25.589 hybrid contribution 0.380 0.434 1.320 1.441 sum -16.576 13.801 -12.414 24.886 Atomic orbital electron populations 1.23639 0.95006 1.01854 1.02960 1.21988 0.95118 0.95824 0.99144 1.20855 0.97580 0.94882 0.99131 1.21340 0.96507 0.96416 0.98951 1.21359 0.94909 0.97924 0.98713 1.20688 0.81936 0.81379 0.85479 1.90698 1.73421 1.35845 1.41812 1.46055 1.31681 1.25800 1.34702 1.21702 0.89143 0.97953 0.92402 1.21154 0.94995 0.98294 0.82876 0.88687 1.22116 0.98251 1.03221 0.98460 1.46119 1.67776 1.09685 1.15491 1.20315 0.76777 0.82878 0.88217 1.90709 1.52078 1.33984 1.62229 1.23291 1.04118 1.05130 0.95050 1.84797 1.84287 1.03077 1.19265 1.22305 1.49100 0.98439 0.97136 0.89390 1.24721 0.93295 0.99184 0.94131 1.69937 1.40878 1.31605 1.09189 0.86732 0.81046 0.83750 0.80296 1.19211 1.19929 1.15936 1.21544 0.97206 0.96106 0.99652 1.20819 0.97509 0.95013 0.98979 0.88508 0.88462 0.90678 0.90944 0.90808 0.91152 0.88167 0.75984 0.90759 0.90010 0.92115 0.91089 0.91461 0.76565 0.88487 0.88485 0.91901 0.91149 0.91004 0.90350 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 13.99 29.01 0.41 -0.94 16 2 C -0.12 -0.87 5.35 -100.51 -0.54 -1.40 16 3 C -0.09 -0.59 6.03 -27.49 -0.17 -0.76 16 4 C -0.09 -0.75 4.53 -26.64 -0.12 -0.87 16 5 C -0.11 -0.82 2.42 -91.81 -0.22 -1.04 16 6 C 0.52 5.06 7.15 -10.98 -0.08 4.98 16 7 O -0.54 -7.18 15.94 5.56 0.09 -7.09 16 8 N -0.73 -6.03 5.26 -60.29 -0.32 -6.35 16 9 C 0.11 0.92 5.23 -4.04 -0.02 0.90 16 10 C 0.13 1.24 2.73 -67.93 -0.19 1.06 16 11 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 12 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 13 N -0.74 -7.87 4.52 -53.81 -0.24 -8.11 16 14 C 0.53 8.37 7.81 -10.98 -0.09 8.29 16 15 O -0.52 -10.08 15.52 5.56 0.09 -10.00 16 16 C -0.13 -2.23 6.16 36.01 0.22 -2.01 16 17 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 18 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 19 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 20 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 21 N -0.88 -26.10 13.97 55.49 0.78 -25.32 16 22 Si 0.86 21.31 27.74 -169.99 -4.72 16.60 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 26 C -0.11 -0.75 5.14 -26.63 -0.14 -0.88 16 27 C -0.09 -0.58 6.03 -27.48 -0.17 -0.75 16 28 H 0.10 0.59 7.92 -52.49 -0.42 0.17 16 29 H 0.10 0.61 7.92 -52.49 -0.42 0.19 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 32 H 0.07 0.63 8.00 -51.93 -0.42 0.21 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.05 7.50 -40.82 -0.31 2.74 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.40 3.43 8.60 -40.82 -0.35 3.08 16 42 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 43 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.46 7.45 -51.93 -0.39 0.08 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -34.09 404.84 -8.90 -42.99 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.15 Total: 2.80 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.53 Total: -6.22 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.22 Total: -39.78 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.17 Total: -17.09 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.72 Total: 16.60 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.09 -8.90 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689405817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.571 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds