Wall clock time and date at job start Sat Apr 11 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47100 * 119.99959 * 2 1 4 4 O 1.21612 * 119.99314 * 180.02562 * 3 2 1 5 5 N 1.34775 * 120.00360 * 359.97438 * 3 2 1 6 6 C 1.46492 * 120.00395 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47631 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.46716 * 294.99825 * 7 6 5 9 9 C 1.52997 * 109.47317 * 174.99916 * 7 6 5 10 10 N 1.46500 * 109.46944 * 54.99476 * 7 6 5 11 11 C 1.34780 * 119.99910 * 205.00356 * 10 7 6 12 12 O 1.21281 * 119.99723 * 0.02562 * 11 10 7 13 13 C 1.50693 * 120.00182 * 180.02562 * 11 10 7 14 14 S 1.81001 * 109.47402 * 180.02562 * 13 11 10 15 15 C 1.76195 * 99.99977 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00349 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99961 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99983 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46840 * 60.00174 * 19 17 15 21 21 H 1.48498 * 109.46742 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47024 * 300.00452 * 19 17 15 23 23 C 1.32991 * 119.99707 * 180.02562 * 2 1 3 24 24 C 1.51442 * 126.34290 * 179.68414 * 23 2 1 25 25 C 1.54274 * 106.85642 * 180.24329 * 24 23 2 26 26 C 1.54984 * 103.65924 * 23.48429 * 25 24 23 27 27 C 1.51846 * 126.34261 * 0.02562 * 23 2 1 28 28 H 1.09000 * 109.47211 * 89.99464 * 1 2 3 29 29 H 1.09000 * 109.47273 * 210.00584 * 1 2 3 30 30 H 1.09004 * 109.47213 * 330.00071 * 1 2 3 31 31 H 0.97006 * 119.99793 * 359.97438 * 5 3 2 32 32 H 1.09001 * 109.47360 * 59.99590 * 6 5 3 33 33 H 1.09006 * 109.46539 * 300.00329 * 6 5 3 34 34 H 1.09002 * 109.47153 * 299.99641 * 9 7 6 35 35 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.47261 * 59.99813 * 9 7 6 37 37 H 0.96994 * 119.99975 * 25.00733 * 10 7 6 38 38 H 1.09007 * 109.46680 * 299.99959 * 13 11 10 39 39 H 1.09000 * 109.47439 * 59.99224 * 13 11 10 40 40 H 0.97001 * 120.00154 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.98500 * 299.73587 * 24 23 2 42 42 H 1.09004 * 109.98004 * 61.02773 * 24 23 2 43 43 H 1.08999 * 110.79354 * 264.85988 * 25 24 23 44 44 H 1.09001 * 110.42932 * 141.93577 * 25 24 23 45 45 H 1.09001 * 110.83273 * 204.49040 * 26 25 24 46 46 H 1.09007 * 110.83058 * 80.90980 * 26 25 24 47 47 H 1.09000 * 110.44222 * 274.92485 * 27 23 2 48 48 H 1.09003 * 110.44162 * 37.32232 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2738 -0.0005 5 7 1.5687 2.4412 -0.0005 6 6 2.3012 3.7098 -0.0011 7 6 1.3070 4.8728 -0.0010 8 1 0.7405 4.8665 -0.9322 9 6 2.0680 6.1942 0.1242 10 7 0.3879 4.7294 1.1308 11 6 -0.8366 5.2902 1.0797 12 8 -1.1776 5.9133 0.0966 13 6 -1.7819 5.1432 2.2441 14 16 -3.3328 5.9998 1.8741 15 6 -4.2240 5.6741 3.3587 16 1 -3.7666 5.0946 4.1470 17 6 -5.5135 6.1631 3.5155 18 7 -6.0708 6.8697 2.5550 19 14 -6.4581 5.8183 5.0899 20 1 -5.7169 6.3838 6.2457 21 1 -7.8018 6.4451 5.0082 22 1 -6.6066 4.3513 5.2669 23 6 2.1720 -1.1518 -0.0005 24 6 3.6771 -1.3192 -0.0073 25 6 3.9585 -2.8360 -0.0114 26 6 2.6646 -3.4467 -0.6072 27 6 1.5626 -2.5426 -0.0017 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 0.5987 2.4412 -0.0013 32 1 2.9279 3.7672 -0.8911 33 1 2.9279 3.7678 0.8889 34 1 2.6345 6.2005 1.0554 35 1 1.3597 7.0228 0.1238 36 1 2.7518 6.3009 -0.7179 37 1 0.6606 4.2309 1.9168 38 1 -1.9834 4.0860 2.4171 39 1 -1.3302 5.5776 3.1359 40 1 -6.9718 7.2117 2.6647 41 1 4.0993 -0.8574 -0.8999 42 1 4.1064 -0.8651 0.8858 43 1 4.1232 -3.2018 1.0021 44 1 4.8159 -3.0622 -0.6453 45 1 2.5393 -4.4802 -0.2841 46 1 2.6683 -3.3771 -1.6950 47 1 1.3291 -2.8568 1.0156 48 1 0.6661 -2.5649 -0.6213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689438520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:30 Heat of formation + Delta-G solvation = -85.212558 kcal Electronic energy + Delta-G solvation = -26715.776586 eV Core-core repulsion = 22896.039011 eV Total energy + Delta-G solvation = -3819.737576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35355 -39.41472 -38.17833 -36.31112 -34.20866 -33.35694 -32.45837 -31.42944 -29.26600 -28.64336 -27.99682 -26.68589 -25.51251 -24.35438 -21.90899 -21.06439 -20.99592 -20.39265 -18.75245 -17.84996 -16.82388 -16.62426 -16.49956 -16.11958 -15.78313 -15.24012 -15.02818 -14.83180 -14.70897 -14.19814 -13.86712 -13.67709 -13.56831 -13.30443 -13.04921 -12.95518 -12.80345 -12.71302 -12.59414 -12.56599 -12.21280 -12.06931 -11.87003 -11.55313 -11.42434 -11.31364 -11.16046 -11.07483 -11.06158 -10.97497 -10.79294 -9.89560 -9.85761 -9.50120 -9.35801 -9.10190 -9.02837 -8.97372 -8.28145 -6.53729 -6.24549 -3.95503 1.12414 2.88222 2.98128 3.04340 3.08879 3.21269 3.25536 3.28712 3.65568 4.07153 4.17627 4.30201 4.41892 4.60655 4.64720 4.77440 4.89822 4.92316 5.06790 5.07329 5.10624 5.14665 5.21721 5.34424 5.35606 5.37350 5.42208 5.43549 5.50567 5.53194 5.56515 5.63068 5.68787 5.71898 5.83065 5.85909 5.91642 5.95366 6.06593 6.09575 6.16179 6.22914 6.32213 6.55016 7.31891 7.56278 7.61415 8.04433 8.31980 8.52826 9.20768 10.82732 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.002258 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.501781 B =12396.194448 C =14180.594688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.191 4.191 3 C 0.556 3.444 4 O -0.544 6.544 5 N -0.727 5.727 6 C 0.114 3.886 7 C 0.132 3.868 8 H 0.095 0.905 9 C -0.161 4.161 10 N -0.737 5.737 11 C 0.533 3.467 12 O -0.514 6.514 13 C -0.154 4.154 14 S -0.058 6.058 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.035 4.035 24 C -0.090 4.090 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.101 4.101 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.405 0.595 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.321 -17.460 -5.086 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.194 4.194 3 C 0.346 3.654 4 O -0.423 6.423 5 N -0.380 5.380 6 C -0.010 4.010 7 C 0.026 3.974 8 H 0.113 0.887 9 C -0.220 4.220 10 N -0.393 5.393 11 C 0.319 3.681 12 O -0.388 6.388 13 C -0.305 4.305 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.037 4.037 24 C -0.127 4.127 25 C -0.167 4.167 26 C -0.161 4.161 27 C -0.138 4.138 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.449 -16.280 -6.809 26.261 hybrid contribution -0.597 -1.030 2.590 2.851 sum 18.852 -17.311 -4.219 25.940 Atomic orbital electron populations 1.20733 0.90460 1.03176 1.02621 1.20748 0.96161 0.91726 1.10733 1.18280 0.87118 0.83921 0.76106 1.90766 1.13513 1.87765 1.50289 1.45941 1.10907 1.05386 1.75740 1.21685 0.94306 0.81718 1.03307 1.21146 0.90444 0.94128 0.91673 0.88708 1.22113 1.00592 0.97119 1.02166 1.46160 1.15308 1.57661 1.20149 1.20339 0.81187 0.77922 0.88618 1.90711 1.75545 1.39283 1.33261 1.23543 1.02257 1.05832 0.98879 1.85393 1.04130 1.68365 1.25305 1.22820 1.02330 1.40149 1.03192 0.90992 1.24990 0.96546 0.94524 0.97489 1.70001 1.15041 1.33100 1.32111 0.86230 0.78639 0.78667 0.82005 1.19935 1.20800 1.19937 1.22730 0.96478 0.93598 0.90872 1.21268 0.92117 0.95525 1.03784 1.22478 0.97782 0.95318 1.01160 1.22520 0.94451 0.98709 1.00461 1.21583 0.98677 0.91457 1.02032 0.90997 0.91031 0.91520 0.75856 0.90045 0.90834 0.92200 0.91046 0.91516 0.76737 0.89261 0.89217 0.92103 0.89697 0.89797 0.91384 0.91293 0.91008 0.91139 0.89477 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.15 36.01 0.33 -0.56 16 2 C -0.19 -1.84 6.00 -102.85 -0.62 -2.46 16 3 C 0.56 6.35 7.75 -12.67 -0.10 6.26 16 4 O -0.54 -7.57 14.11 5.27 0.07 -7.50 16 5 N -0.73 -7.17 5.33 -61.50 -0.33 -7.49 16 6 C 0.11 1.07 5.23 -4.05 -0.02 1.05 16 7 C 0.13 1.39 2.73 -67.93 -0.19 1.21 16 8 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 9 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 10 N -0.74 -8.83 4.52 -53.81 -0.24 -9.07 16 11 C 0.53 9.15 7.81 -10.99 -0.09 9.06 16 12 O -0.51 -10.88 15.52 5.56 0.09 -10.79 16 13 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 14 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 15 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 16 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 19 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.03 -0.31 6.12 -100.24 -0.61 -0.93 16 24 C -0.09 -0.82 4.81 -26.85 -0.13 -0.95 16 25 C -0.13 -0.86 6.88 -25.02 -0.17 -1.04 16 26 C -0.12 -0.73 6.94 -24.70 -0.17 -0.90 16 27 C -0.10 -0.66 5.66 -26.33 -0.15 -0.81 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.49 7.22 -51.93 -0.37 0.12 16 30 H 0.07 0.53 6.71 -51.93 -0.35 0.18 16 31 H 0.41 3.79 6.24 -40.82 -0.25 3.54 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 38 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 39 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 0.88 7.67 -51.93 -0.40 0.48 16 42 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.47 7.68 -51.93 -0.40 0.07 16 LS Contribution 405.22 15.07 6.11 6.11 Total: -1.00 -34.29 405.22 -9.91 -44.20 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.96 Total: 4.06 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.14 Total: -6.77 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.16 Total: -41.61 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.16 Total: -18.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.29 -9.91 -44.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689438520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.016 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds