Wall clock time and date at job start Sat Apr 11 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47100 * 119.99959 * 2 1 4 4 O 1.21612 * 119.99314 * 180.02562 * 3 2 1 5 5 N 1.34775 * 120.00360 * 359.97438 * 3 2 1 6 6 C 1.46492 * 120.00395 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47631 * 180.02562 * 6 5 3 8 8 H 1.09002 * 109.46716 * 294.99825 * 7 6 5 9 9 C 1.52997 * 109.47317 * 174.99916 * 7 6 5 10 10 N 1.46500 * 109.46944 * 54.99476 * 7 6 5 11 11 C 1.34780 * 119.99910 * 205.00356 * 10 7 6 12 12 O 1.21281 * 119.99723 * 0.02562 * 11 10 7 13 13 C 1.50693 * 120.00182 * 180.02562 * 11 10 7 14 14 S 1.81001 * 109.47402 * 180.02562 * 13 11 10 15 15 C 1.76195 * 99.99977 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00349 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99961 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99983 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46840 * 60.00174 * 19 17 15 21 21 H 1.48498 * 109.46742 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47024 * 300.00452 * 19 17 15 23 23 C 1.32991 * 119.99707 * 180.02562 * 2 1 3 24 24 C 1.51442 * 126.34290 * 179.68414 * 23 2 1 25 25 C 1.54274 * 106.85642 * 180.24329 * 24 23 2 26 26 C 1.54984 * 103.65924 * 23.48429 * 25 24 23 27 27 C 1.51846 * 126.34261 * 0.02562 * 23 2 1 28 28 H 1.09000 * 109.47211 * 89.99464 * 1 2 3 29 29 H 1.09000 * 109.47273 * 210.00584 * 1 2 3 30 30 H 1.09004 * 109.47213 * 330.00071 * 1 2 3 31 31 H 0.97006 * 119.99793 * 359.97438 * 5 3 2 32 32 H 1.09001 * 109.47360 * 59.99590 * 6 5 3 33 33 H 1.09006 * 109.46539 * 300.00329 * 6 5 3 34 34 H 1.09002 * 109.47153 * 299.99641 * 9 7 6 35 35 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.47261 * 59.99813 * 9 7 6 37 37 H 0.96994 * 119.99975 * 25.00733 * 10 7 6 38 38 H 1.09007 * 109.46680 * 299.99959 * 13 11 10 39 39 H 1.09000 * 109.47439 * 59.99224 * 13 11 10 40 40 H 0.97001 * 120.00154 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.98500 * 299.73587 * 24 23 2 42 42 H 1.09004 * 109.98004 * 61.02773 * 24 23 2 43 43 H 1.08999 * 110.79354 * 264.85988 * 25 24 23 44 44 H 1.09001 * 110.42932 * 141.93577 * 25 24 23 45 45 H 1.09001 * 110.83273 * 204.49040 * 26 25 24 46 46 H 1.09007 * 110.83058 * 80.90980 * 26 25 24 47 47 H 1.09000 * 110.44222 * 274.92485 * 27 23 2 48 48 H 1.09003 * 110.44162 * 37.32232 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2738 -0.0005 5 7 1.5687 2.4412 -0.0005 6 6 2.3012 3.7098 -0.0011 7 6 1.3070 4.8728 -0.0010 8 1 0.7405 4.8665 -0.9322 9 6 2.0680 6.1942 0.1242 10 7 0.3879 4.7294 1.1308 11 6 -0.8366 5.2902 1.0797 12 8 -1.1776 5.9133 0.0966 13 6 -1.7819 5.1432 2.2441 14 16 -3.3328 5.9998 1.8741 15 6 -4.2240 5.6741 3.3587 16 1 -3.7666 5.0946 4.1470 17 6 -5.5135 6.1631 3.5155 18 7 -6.0708 6.8697 2.5550 19 14 -6.4581 5.8183 5.0899 20 1 -5.7169 6.3838 6.2457 21 1 -7.8018 6.4451 5.0082 22 1 -6.6066 4.3513 5.2669 23 6 2.1720 -1.1518 -0.0005 24 6 3.6771 -1.3192 -0.0073 25 6 3.9585 -2.8360 -0.0114 26 6 2.6646 -3.4467 -0.6072 27 6 1.5626 -2.5426 -0.0017 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 0.5987 2.4412 -0.0013 32 1 2.9279 3.7672 -0.8911 33 1 2.9279 3.7678 0.8889 34 1 2.6345 6.2005 1.0554 35 1 1.3597 7.0228 0.1238 36 1 2.7518 6.3009 -0.7179 37 1 0.6606 4.2309 1.9168 38 1 -1.9834 4.0860 2.4171 39 1 -1.3302 5.5776 3.1359 40 1 -6.9718 7.2117 2.6647 41 1 4.0993 -0.8574 -0.8999 42 1 4.1064 -0.8651 0.8858 43 1 4.1232 -3.2018 1.0021 44 1 4.8159 -3.0622 -0.6453 45 1 2.5393 -4.4802 -0.2841 46 1 2.6683 -3.3771 -1.6950 47 1 1.3291 -2.8568 1.0156 48 1 0.6661 -2.5649 -0.6213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689438520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:30 Heat of formation + Delta-G solvation = -107.633085 kcal Electronic energy + Delta-G solvation = -26716.748813 eV Core-core repulsion = 22896.039011 eV Total energy + Delta-G solvation = -3820.709803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.26812 -40.61318 -38.88438 -37.38753 -35.09609 -34.57227 -34.18045 -32.57906 -30.03514 -29.85749 -28.61786 -27.64346 -27.47179 -25.05279 -22.95247 -21.83039 -21.64143 -21.54508 -19.93609 -19.39442 -17.96945 -17.67523 -17.36182 -16.99609 -16.86419 -16.58691 -16.38794 -16.18284 -15.81218 -15.51042 -14.80116 -14.70294 -14.53021 -14.27030 -14.19927 -14.05862 -13.82851 -13.52299 -13.38326 -13.27014 -13.24916 -13.15297 -12.98168 -12.86020 -12.81390 -12.60031 -12.20995 -12.06323 -11.94264 -11.87526 -11.72883 -11.48834 -11.11911 -10.94809 -10.76260 -10.26116 -10.24485 -10.19174 -9.68482 -8.64458 -8.33477 -6.10832 0.37502 1.27583 1.44250 1.47382 1.56766 1.61113 2.10610 2.22038 2.27995 2.32837 3.00660 3.32973 3.44213 3.54829 3.73210 3.91615 3.97877 4.03975 4.13163 4.17527 4.23644 4.30733 4.33692 4.49175 4.52823 4.56167 4.66026 4.69172 4.73106 4.76003 4.79728 4.89469 4.93511 4.98378 5.05302 5.12136 5.19314 5.19948 5.22888 5.38279 5.40113 5.42969 5.46635 5.50296 5.64270 6.20711 6.45818 6.49431 7.08085 7.18754 7.23063 8.75186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.002258 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.501781 B =12396.194448 C =14180.594688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.206 4.206 3 C 0.551 3.449 4 O -0.575 6.575 5 N -0.722 5.722 6 C 0.123 3.877 7 C 0.137 3.863 8 H 0.080 0.920 9 C -0.157 4.157 10 N -0.711 5.711 11 C 0.539 3.461 12 O -0.559 6.559 13 C -0.132 4.132 14 S -0.147 6.147 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.996 3.004 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.261 1.261 23 C -0.037 4.037 24 C -0.091 4.091 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.099 4.099 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.408 0.592 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.414 0.586 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.063 -19.655 -3.617 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.209 4.209 3 C 0.342 3.658 4 O -0.457 6.457 5 N -0.374 5.374 6 C -0.001 4.001 7 C 0.032 3.968 8 H 0.098 0.902 9 C -0.216 4.216 10 N -0.366 5.366 11 C 0.325 3.675 12 O -0.437 6.437 13 C -0.283 4.283 14 S 0.080 5.920 15 C -0.694 4.694 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.818 3.182 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.038 4.038 24 C -0.128 4.128 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.135 4.135 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.245 0.755 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.116 0.884 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.227 -18.497 -5.324 27.922 hybrid contribution -0.657 -0.378 2.085 2.219 sum 19.570 -18.875 -3.239 27.382 Atomic orbital electron populations 1.20739 0.89149 1.03704 1.03041 1.20847 0.97046 0.91133 1.11861 1.18628 0.86885 0.84763 0.75567 1.90751 1.14788 1.88216 1.51920 1.45925 1.11042 1.05281 1.75158 1.21625 0.93732 0.80792 1.03977 1.21188 0.90075 0.95266 0.90236 0.90192 1.22076 1.00252 0.95335 1.03952 1.45880 1.13647 1.56009 1.21074 1.19993 0.82216 0.77895 0.87358 1.90707 1.76664 1.41621 1.34666 1.23388 0.98654 1.06007 1.00226 1.85557 1.09252 1.70566 1.26602 1.23168 1.02823 1.40082 1.03352 0.89971 1.26099 0.97681 0.94077 1.01255 1.70169 1.15487 1.34464 1.34577 0.85041 0.76907 0.79054 0.77236 1.18808 1.20513 1.18589 1.23041 0.96517 0.94725 0.89553 1.21242 0.92357 0.97167 1.02054 1.22471 0.98610 0.93389 1.01903 1.22536 0.93437 0.99429 1.00395 1.21656 0.99105 0.89839 1.02930 0.90615 0.89811 0.91669 0.75472 0.89500 0.90039 0.90733 0.93787 0.89453 0.74945 0.87019 0.87526 0.92034 0.91517 0.91533 0.90636 0.90735 0.89240 0.91181 0.88380 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.15 71.24 0.65 -0.91 16 2 C -0.21 -3.79 6.00 -18.70 -0.11 -3.90 16 3 C 0.55 12.24 7.75 86.57 0.67 12.91 16 4 O -0.57 -15.97 14.11 -4.07 -0.06 -16.02 16 5 N -0.72 -13.38 5.33 -466.73 -2.49 -15.87 16 6 C 0.12 2.10 5.23 86.38 0.45 2.55 16 7 C 0.14 2.74 2.73 44.99 0.12 2.86 16 8 H 0.08 1.92 7.58 -2.39 -0.02 1.90 16 9 C -0.16 -2.96 9.48 71.98 0.68 -2.28 16 10 N -0.71 -15.91 4.52 -442.54 -2.00 -17.91 16 11 C 0.54 18.18 7.81 87.65 0.68 18.87 16 12 O -0.56 -24.08 15.52 -3.03 -0.05 -24.13 16 13 C -0.13 -4.89 6.16 71.23 0.44 -4.45 16 14 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 15 C -0.55 -30.47 9.50 67.96 0.65 -29.82 16 16 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 17 C 0.01 0.77 5.49 84.86 0.47 1.24 16 18 N -0.91 -55.13 13.22 21.65 0.29 -54.85 16 19 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 23 C -0.04 -0.62 6.12 -17.01 -0.10 -0.72 16 24 C -0.09 -1.64 4.81 30.52 0.15 -1.49 16 25 C -0.13 -1.50 6.88 31.71 0.22 -1.28 16 26 C -0.12 -1.15 6.94 31.91 0.22 -0.93 16 27 C -0.10 -1.08 5.66 30.85 0.17 -0.91 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.98 7.22 -2.39 -0.02 0.96 16 30 H 0.06 0.93 6.71 -2.38 -0.02 0.91 16 31 H 0.41 7.11 6.24 -92.70 -0.58 6.53 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.41 7.05 8.60 -92.71 -0.80 6.25 16 38 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.07 1.42 7.67 -2.38 -0.02 1.41 16 42 H 0.07 1.41 7.68 -2.38 -0.02 1.39 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 46 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 0.83 7.68 -2.39 -0.02 0.81 16 Total: -1.00 -76.75 405.22 1.51 -75.24 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.41 Total: 26.00 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.36 Total: -8.27 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -4.20 Total: -88.63 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.10 Total: -40.15 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -76.75 1.51 -75.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689438520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.391 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds