Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47387 * 2 1 4 4 C 1.50696 * 109.46721 * 120.00282 * 2 1 3 5 5 O 1.21285 * 120.00122 * 98.19567 * 4 2 1 6 6 N 1.34780 * 119.99702 * 278.19174 * 4 2 1 7 7 C 1.46504 * 119.99975 * 185.67134 * 6 4 2 8 8 C 1.46496 * 120.00170 * 5.67210 * 6 4 2 9 9 C 1.53498 * 114.20410 * 126.33288 * 8 6 4 10 10 N 1.47067 * 87.98603 * 87.71895 * 9 8 6 11 11 C 1.34773 * 136.05771 * 207.07890 * 10 9 8 12 12 O 1.21283 * 120.00071 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00299 * 179.97438 * 11 10 9 14 14 S 1.80992 * 109.47432 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00104 * 180.02562 * 14 13 11 16 16 H 1.07994 * 119.99855 * 0.02562 * 15 14 13 17 17 C 1.38799 * 119.99752 * 179.72369 * 15 14 13 18 18 N 1.31625 * 120.00322 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99757 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46980 * 89.99942 * 19 17 15 21 21 H 1.48502 * 109.47064 * 209.99833 * 19 17 15 22 22 H 1.48497 * 109.47103 * 329.99786 * 19 17 15 23 23 C 1.47065 * 87.88450 * 27.33999 * 10 9 8 24 24 C 1.53001 * 109.46850 * 239.99502 * 2 1 3 25 25 C 1.53780 * 113.60990 * 159.13777 * 24 2 1 26 26 C 1.53957 * 87.02026 * 220.04868 * 25 24 2 27 27 C 1.53782 * 87.10978 * 25.36628 * 26 25 24 28 28 H 1.09002 * 109.47250 * 59.98920 * 1 2 3 29 29 H 1.08994 * 109.47759 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47446 * 299.99698 * 1 2 3 31 31 H 1.08994 * 109.47587 * 264.65870 * 7 6 4 32 32 H 1.09000 * 109.46723 * 24.65735 * 7 6 4 33 33 H 1.09004 * 109.47240 * 144.65194 * 7 6 4 34 34 H 1.09001 * 113.27941 * 353.26647 * 8 6 4 35 35 H 1.08996 * 113.46898 * 332.93144 * 9 8 6 36 36 H 1.09001 * 113.46206 * 202.49599 * 9 8 6 37 37 H 1.08992 * 109.46610 * 60.00204 * 13 11 10 38 38 H 1.09005 * 109.46633 * 300.00736 * 13 11 10 39 39 H 0.97002 * 120.00588 * 180.02562 * 18 17 15 40 40 H 1.09009 * 113.46829 * 87.44029 * 23 10 9 41 41 H 1.08997 * 113.47071 * 217.87412 * 23 10 9 42 42 H 1.08990 * 112.85304 * 290.33593 * 24 2 1 43 43 H 1.08996 * 113.61782 * 334.56960 * 25 24 2 44 44 H 1.09003 * 113.61371 * 105.47539 * 25 24 2 45 45 H 1.08994 * 113.54226 * 270.81513 * 26 25 24 46 46 H 1.09008 * 113.74226 * 139.94576 * 26 25 24 47 47 H 1.08994 * 113.61423 * 220.08730 * 27 26 25 48 48 H 1.09004 * 113.61659 * 89.18667 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.3755 -1.8717 1.1625 6 7 2.1000 -0.0553 2.4063 7 6 2.7030 -0.7047 3.5730 8 6 1.5706 1.3061 2.5179 9 6 0.5567 1.4958 3.6547 10 7 1.6896 1.7829 4.5474 11 6 1.9389 1.6673 5.8668 12 8 1.0869 1.2258 6.6086 13 6 3.2767 2.0854 6.4204 14 16 3.3025 1.8096 8.2091 15 6 4.9317 2.3679 8.5813 16 1 5.5698 2.7363 7.7918 17 6 5.3927 2.3400 9.8902 18 7 4.6127 1.8970 10.8534 19 14 7.1197 2.9325 10.2849 20 1 7.0869 4.3855 10.5899 21 1 7.6404 2.1913 11.4617 22 1 8.0047 2.6916 9.1171 23 6 2.4283 2.2580 3.3678 24 6 2.0399 -0.7214 -1.2492 25 6 3.4866 -0.3578 -1.6230 26 6 3.0233 -0.3621 -3.0912 27 6 1.6120 -0.0510 -2.5654 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9213 -1.1646 4.1774 32 1 3.4033 -1.4710 3.2406 33 1 3.2333 0.0383 4.1687 34 1 1.2546 1.7251 1.5626 35 1 0.0198 0.5835 3.9142 36 1 -0.1064 2.3483 3.5070 37 1 3.4412 3.1427 6.2131 38 1 4.0644 1.4962 5.9508 39 1 4.9347 1.8778 11.7682 40 1 2.2586 3.3114 3.1445 41 1 3.4860 1.9950 3.3830 42 1 1.8519 -1.7947 -1.2246 43 1 3.7962 0.6244 -1.2658 44 1 4.2079 -1.1410 -1.3895 45 1 3.1054 -1.3374 -3.5707 46 1 3.4533 0.4412 -3.6895 47 1 0.8221 -0.5868 -3.0917 48 1 1.4081 1.0152 -2.4663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689659232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -7.065580 kcal Electronic energy + Delta-G solvation = -27660.739202 eV Core-core repulsion = 23844.390334 eV Total energy + Delta-G solvation = -3816.348869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32249 -40.00960 -38.54021 -37.61726 -34.52584 -33.30116 -32.46526 -30.60406 -28.22635 -27.25708 -26.50992 -26.10675 -25.59473 -25.47256 -23.22061 -22.18128 -20.03706 -19.57834 -18.53363 -17.87228 -17.55312 -16.85880 -16.17796 -15.88758 -15.80878 -15.39164 -15.26926 -14.99233 -14.83482 -14.29445 -14.03195 -13.83255 -13.64258 -13.19208 -13.12530 -12.87225 -12.77700 -12.63724 -12.56633 -12.40733 -12.16970 -12.08388 -11.98888 -11.93529 -11.53760 -11.33414 -11.08790 -11.05561 -10.86931 -10.79257 -10.66457 -10.49087 -9.91820 -9.86240 -9.47905 -9.10108 -8.91679 -8.71586 -8.29001 -6.55192 -6.25053 -3.96493 2.34751 2.61192 2.65491 2.98272 3.20010 3.21572 3.27719 3.49637 3.93324 3.98840 4.16430 4.20208 4.28079 4.35885 4.44608 4.53400 4.61401 4.79719 4.81608 4.92362 4.98245 5.10205 5.12711 5.20516 5.27037 5.33696 5.35378 5.37836 5.40569 5.42643 5.47174 5.50409 5.55760 5.56564 5.58535 5.69255 5.78400 5.79858 5.87944 5.88955 5.91953 6.07590 6.16423 6.21070 7.11864 7.56025 7.73349 7.92525 8.31577 8.45024 9.20187 10.82333 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019862 B = 0.002257 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.415591 B =12401.549804 C =13083.649687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.094 0.906 4 C 0.523 3.477 5 O -0.532 6.532 6 N -0.593 5.593 7 C 0.085 3.915 8 C 0.095 3.905 9 C 0.092 3.908 10 N -0.652 5.652 11 C 0.562 3.438 12 O -0.510 6.510 13 C -0.145 4.145 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.089 3.911 24 C -0.093 4.093 25 C -0.138 4.138 26 C -0.142 4.142 27 C -0.134 4.134 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.269 0.731 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 0.581 -28.874 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.112 0.888 4 C 0.311 3.689 5 O -0.408 6.408 6 N -0.325 5.325 7 C -0.057 4.057 8 C -0.011 4.011 9 C -0.032 4.032 10 N -0.391 5.391 11 C 0.352 3.648 12 O -0.383 6.383 13 C -0.296 4.296 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.036 4.036 24 C -0.111 4.111 25 C -0.176 4.176 26 C -0.180 4.180 27 C -0.172 4.172 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.728 -0.803 -27.320 28.403 hybrid contribution 2.114 1.116 -0.338 2.414 sum -5.615 0.313 -27.658 28.224 Atomic orbital electron populations 1.21772 0.92390 1.03234 1.02748 1.21393 0.97842 1.00281 0.92804 0.88817 1.20671 0.77446 0.86814 0.83958 1.90700 1.48401 1.16517 1.85168 1.47507 1.59731 1.14285 1.10979 1.21706 0.98571 0.98323 0.87130 1.22549 0.95942 0.83407 0.99207 1.23348 0.91585 1.02048 0.86266 1.49726 1.17853 1.66008 1.05531 1.19941 0.89349 0.77044 0.78450 1.90732 1.47737 1.44137 1.55737 1.23487 0.95604 1.04125 1.06344 1.85432 1.20500 1.84350 0.92927 1.22838 0.99687 1.49575 0.96275 0.90937 1.24996 0.98548 0.94873 0.95153 1.70011 1.36122 1.43359 1.00709 0.86160 0.82394 0.78772 0.78131 1.20250 1.20705 1.19679 1.23444 0.98828 0.98773 0.82542 1.22444 0.96213 1.00703 0.91760 1.22991 0.96610 1.01831 0.96142 1.22818 0.96775 1.01896 0.96496 1.22948 0.97166 1.00813 0.96263 0.91072 0.91824 0.91917 0.92499 0.90395 0.90876 0.85734 0.90025 0.88767 0.89306 0.89436 0.92126 0.88306 0.89711 0.88101 0.90261 0.91322 0.90254 0.91471 0.91400 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.74 37.16 0.32 -0.47 16 2 C -0.10 -0.69 1.59 -91.77 -0.15 -0.84 16 3 H 0.09 0.46 6.56 -51.93 -0.34 0.11 16 4 C 0.52 5.57 6.78 -10.99 -0.07 5.49 16 5 O -0.53 -7.79 15.49 5.55 0.09 -7.71 16 6 N -0.59 -6.02 3.13 -173.55 -0.54 -6.57 16 7 C 0.08 1.07 9.47 59.85 0.57 1.64 16 8 C 0.10 0.69 3.83 -67.68 -0.26 0.43 16 9 C 0.09 0.87 8.13 -8.51 -0.07 0.80 16 10 N -0.65 -8.41 2.35 -185.07 -0.43 -8.84 16 11 C 0.56 10.41 7.56 -10.99 -0.08 10.33 16 12 O -0.51 -11.67 16.64 5.55 0.09 -11.57 16 13 C -0.15 -2.90 5.98 36.01 0.22 -2.68 16 14 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 15 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 19 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.09 0.74 7.50 -8.37 -0.06 0.68 16 24 C -0.09 -0.67 2.72 -89.81 -0.24 -0.92 16 25 C -0.14 -0.99 7.62 -25.83 -0.20 -1.19 16 26 C -0.14 -0.83 8.09 -25.83 -0.21 -1.04 16 27 C -0.13 -0.71 6.75 -25.92 -0.17 -0.89 16 28 H 0.07 0.28 7.50 -51.93 -0.39 -0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.30 6.90 -51.93 -0.36 -0.05 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.03 7.35 -51.93 -0.38 0.65 16 33 H 0.07 0.95 5.59 -51.93 -0.29 0.66 16 34 H 0.13 0.49 5.25 -51.93 -0.27 0.22 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.08 0.73 7.60 -51.93 -0.39 0.34 16 42 H 0.10 0.93 7.68 -51.93 -0.40 0.53 16 43 H 0.08 0.51 7.99 -51.93 -0.41 0.10 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -36.43 398.20 -9.37 -45.80 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.86 Total: -2.81 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.21 Total: -1.48 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.24 Total: -40.70 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.43 -9.37 -45.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689659232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.734 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds