Wall clock time and date at job start Sat Apr 11 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47243 * 2 1 4 4 C 1.50703 * 109.46670 * 240.00058 * 2 1 3 5 5 O 1.21283 * 119.99997 * 274.93323 * 4 2 1 6 6 N 1.34771 * 120.00083 * 94.93918 * 4 2 1 7 7 C 1.47025 * 125.64775 * 4.73153 * 6 4 2 8 8 C 1.54332 * 107.26607 * 178.85000 * 7 6 4 9 9 C 1.55153 * 103.02147 * 338.14945 * 8 7 6 10 10 C 1.52998 * 111.03793 * 153.39494 * 9 8 7 11 11 N 1.46500 * 111.00186 * 277.22795 * 9 8 7 12 12 C 1.34780 * 120.00181 * 292.19724 * 11 9 8 13 13 O 1.21283 * 119.99786 * 0.02562 * 12 11 9 14 14 C 1.50692 * 120.00171 * 179.97438 * 12 11 9 15 15 S 1.81001 * 109.47153 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00186 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00043 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00258 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00286 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47120 * 89.99582 * 20 18 16 22 22 H 1.48496 * 109.47117 * 209.99771 * 20 18 16 23 23 H 1.48496 * 109.46915 * 329.99931 * 20 18 16 24 24 C 1.47421 * 125.65045 * 185.04864 * 6 4 2 25 25 C 1.53000 * 109.47109 * 120.00314 * 2 1 3 26 26 C 1.52994 * 117.49670 * 248.74452 * 25 2 1 27 27 C 1.52993 * 117.50070 * 180.08371 * 25 2 1 28 28 H 1.08994 * 109.47082 * 55.01981 * 1 2 3 29 29 H 1.08999 * 109.47325 * 175.02495 * 1 2 3 30 30 H 1.09002 * 109.46921 * 295.02351 * 1 2 3 31 31 H 1.09001 * 109.88543 * 298.40273 * 7 6 4 32 32 H 1.09004 * 109.87552 * 59.56506 * 7 6 4 33 33 H 1.08998 * 110.85356 * 219.67173 * 8 7 6 34 34 H 1.09000 * 110.66463 * 96.52729 * 8 7 6 35 35 H 1.09006 * 109.47053 * 307.77882 * 10 9 8 36 36 H 1.08997 * 109.47413 * 67.77954 * 10 9 8 37 37 H 1.09005 * 109.47160 * 187.78265 * 10 9 8 38 38 H 0.97004 * 120.00109 * 112.19820 * 11 9 8 39 39 H 1.08995 * 109.47432 * 300.00093 * 14 12 11 40 40 H 1.09005 * 109.47132 * 60.00238 * 14 12 11 41 41 H 0.97003 * 120.00572 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36828 * 322.92649 * 24 6 4 43 43 H 1.08995 * 110.36882 * 85.24697 * 24 6 4 44 44 H 1.09000 * 115.55237 * 34.41225 * 25 2 1 45 45 H 1.08998 * 117.50454 * 0.02562 * 26 25 2 46 46 H 1.09006 * 117.49982 * 145.02527 * 26 25 2 47 47 H 1.08997 * 117.50301 * 214.98031 * 27 25 2 48 48 H 1.09004 * 117.50027 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.1492 -1.9176 -1.2285 6 7 2.3516 -0.0043 -2.3332 7 6 2.3519 1.4619 -2.4414 8 6 2.8097 1.8155 -3.8722 9 6 3.5772 0.5430 -4.3182 10 6 3.5493 0.3899 -5.8402 11 7 4.9549 0.5593 -3.8201 12 6 5.8332 1.4636 -4.2969 13 8 5.4829 2.2642 -5.1379 14 6 7.2502 1.4807 -3.7842 15 16 8.1750 2.7990 -4.6106 16 6 9.7486 2.5955 -3.8446 17 1 9.8928 1.8225 -3.1041 18 6 10.8026 3.4291 -4.1919 19 7 10.6267 4.3714 -5.0939 20 14 12.4708 3.2138 -3.3792 21 1 13.2885 2.2613 -4.1725 22 1 13.1629 4.5259 -3.3146 23 1 12.2868 2.6828 -2.0047 24 6 2.7521 -0.5743 -3.6324 25 6 2.0400 -0.7213 1.2492 26 6 2.7394 0.1230 2.3164 27 6 3.5550 -0.8265 1.4353 28 1 -0.3633 0.5891 -0.8420 29 1 -0.3634 -1.0238 -0.0891 30 1 -0.3633 0.4347 0.9312 31 1 1.3474 1.8469 -2.2657 32 1 3.0461 1.8869 -1.7164 33 1 3.4707 2.6821 -3.8651 34 1 1.9500 1.9935 -4.5182 35 1 2.5195 0.4496 -6.1926 36 1 4.1362 1.1870 -6.2965 37 1 3.9722 -0.5762 -6.1160 38 1 5.2350 -0.0808 -3.1472 39 1 7.2454 1.6597 -2.7090 40 1 7.7229 0.5204 -3.9905 41 1 11.3634 4.9538 -5.3370 42 1 3.3662 -1.4626 -3.4839 43 1 1.8720 -0.8159 -4.2282 44 1 1.4319 -1.5595 1.5894 45 1 2.8358 1.1924 2.1288 46 1 2.5917 -0.1600 3.3586 47 1 3.9435 -1.7336 1.8981 48 1 4.1884 -0.3814 0.6679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689700484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:54 Heat of formation + Delta-G solvation = -51.181508 kcal Electronic energy + Delta-G solvation = -27807.834255 eV Core-core repulsion = 23989.572376 eV Total energy + Delta-G solvation = -3818.261879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.90529 -39.61780 -37.91460 -36.98593 -34.27512 -32.68569 -32.45092 -31.67056 -29.95354 -28.61333 -27.13993 -25.50532 -24.85063 -23.34014 -22.61543 -21.72669 -21.07476 -19.69623 -18.95329 -17.92575 -17.58462 -16.71447 -16.41654 -15.93950 -15.65467 -15.12171 -15.01481 -14.82468 -14.79835 -14.28303 -13.97766 -13.48278 -13.36476 -13.27249 -13.13521 -12.94585 -12.80151 -12.63617 -12.43583 -12.41197 -12.10610 -11.98022 -11.81566 -11.57153 -11.46240 -11.26623 -11.09463 -11.04997 -10.97168 -10.77922 -10.70419 -10.48035 -9.83944 -9.81175 -9.31202 -9.09347 -8.97568 -8.90148 -8.27246 -6.52604 -6.24192 -3.94687 2.38730 2.61705 2.95564 3.01592 3.20940 3.26090 3.29861 3.51312 3.64565 4.04060 4.16983 4.18435 4.32209 4.43746 4.54849 4.69249 4.76747 4.80522 4.90303 4.92246 5.05899 5.11235 5.13387 5.13611 5.25320 5.34449 5.38289 5.41101 5.44000 5.47268 5.57616 5.64762 5.67819 5.69351 5.72213 5.77047 5.84420 5.84838 5.93237 5.94824 6.01490 6.11559 6.32535 6.64811 7.21603 7.57539 7.66200 7.92190 8.32983 8.55675 9.21535 10.83177 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.002704 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.459239 B =10351.381423 C =11847.182860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.090 0.910 4 C 0.537 3.463 5 O -0.535 6.535 6 N -0.620 5.620 7 C 0.101 3.899 8 C -0.137 4.137 9 C 0.167 3.833 10 C -0.159 4.159 11 N -0.726 5.726 12 C 0.537 3.463 13 O -0.512 6.512 14 C -0.155 4.155 15 S -0.057 6.057 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.105 3.895 25 C -0.136 4.136 26 C -0.177 4.177 27 C -0.172 4.172 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.399 0.601 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.579 -8.706 9.652 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.108 0.892 4 C 0.326 3.674 5 O -0.411 6.411 6 N -0.355 5.355 7 C -0.022 4.022 8 C -0.176 4.176 9 C 0.079 3.921 10 C -0.217 4.217 11 N -0.380 5.380 12 C 0.324 3.676 13 O -0.386 6.386 14 C -0.305 4.305 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.018 4.018 25 C -0.155 4.155 26 C -0.214 4.214 27 C -0.209 4.209 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.128 0.872 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.046 -7.911 8.226 24.825 hybrid contribution 1.697 -1.311 1.838 2.825 sum -20.349 -9.222 10.064 24.503 Atomic orbital electron populations 1.21665 0.92049 1.02943 1.02719 1.20882 0.97833 0.99690 0.91368 0.89187 1.20325 0.76842 0.87266 0.83014 1.90700 1.53303 1.14142 1.82937 1.48580 1.68113 1.07509 1.11277 1.22118 1.01281 0.80053 0.98775 1.23066 1.00814 0.99359 0.94354 1.21267 0.81801 0.94298 0.94691 1.22097 1.02843 1.03984 0.92789 1.46004 1.09832 1.37204 1.45000 1.20255 0.86538 0.79686 0.81167 1.90651 1.78713 1.38218 1.31011 1.23549 0.95082 1.07101 1.04812 1.85335 1.06224 1.37566 1.53962 1.22867 0.96222 1.21443 1.27877 0.90975 1.24983 0.99042 0.94445 0.95064 1.70010 1.32534 1.17951 1.29812 0.86176 0.82109 0.77755 0.79527 1.20256 1.20738 1.19690 1.22510 0.98797 0.96623 0.83872 1.22008 0.95802 1.01763 0.95909 1.23083 1.04346 0.97630 0.96301 1.22908 0.93431 1.01674 1.02842 0.92124 0.91771 0.91041 0.91164 0.91192 0.88319 0.89599 0.91747 0.88792 0.92261 0.76724 0.89392 0.89295 0.92174 0.89704 0.89886 0.87186 0.88658 0.88568 0.88564 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.16 37.16 0.34 -0.57 16 2 C -0.08 -0.63 2.58 -91.77 -0.24 -0.87 16 3 H 0.09 0.66 6.69 -51.93 -0.35 0.31 16 4 C 0.54 5.89 6.49 -10.99 -0.07 5.82 16 5 O -0.53 -7.75 16.69 5.55 0.09 -7.65 16 6 N -0.62 -6.04 3.33 -170.52 -0.57 -6.61 16 7 C 0.10 0.85 5.99 -3.06 -0.02 0.83 16 8 C -0.14 -1.36 5.86 -24.89 -0.15 -1.51 16 9 C 0.17 1.80 0.83 -129.68 -0.11 1.69 16 10 C -0.16 -1.76 8.58 37.16 0.32 -1.44 16 11 N -0.73 -9.20 5.18 -45.63 -0.24 -9.44 16 12 C 0.54 9.22 7.21 -10.99 -0.08 9.14 16 13 O -0.51 -10.29 12.73 5.55 0.07 -10.22 16 14 C -0.15 -3.02 6.16 36.00 0.22 -2.79 16 15 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 17 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 20 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.10 1.02 5.94 -2.53 -0.02 1.00 16 25 C -0.14 -1.17 4.67 -90.63 -0.42 -1.60 16 26 C -0.18 -1.32 10.18 -26.70 -0.27 -1.59 16 27 C -0.17 -1.58 9.87 -26.70 -0.26 -1.85 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.61 7.91 -51.93 -0.41 0.20 16 33 H 0.10 1.24 6.92 -51.93 -0.36 0.88 16 34 H 0.09 0.72 7.99 -51.93 -0.42 0.31 16 35 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.09 1.35 5.92 -51.93 -0.31 1.05 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 4.49 8.53 -40.82 -0.35 4.14 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 40 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 43 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 44 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 45 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 46 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -33.97 402.84 -9.67 -43.64 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.05 Total: 3.32 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.55 Total: -6.51 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.07 Total: -41.16 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.16 Total: -17.87 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.97 -9.67 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689700484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.540 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds