Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47243 * 2 1 4 4 C 1.50703 * 109.46670 * 240.00058 * 2 1 3 5 5 O 1.21283 * 119.99997 * 274.93323 * 4 2 1 6 6 N 1.34771 * 120.00083 * 94.93918 * 4 2 1 7 7 C 1.47025 * 125.64775 * 4.73153 * 6 4 2 8 8 C 1.54332 * 107.26607 * 178.85000 * 7 6 4 9 9 C 1.55153 * 103.02147 * 338.14945 * 8 7 6 10 10 C 1.52998 * 111.03793 * 153.39494 * 9 8 7 11 11 N 1.46500 * 111.00186 * 277.22795 * 9 8 7 12 12 C 1.34780 * 120.00181 * 292.19724 * 11 9 8 13 13 O 1.21283 * 119.99786 * 0.02562 * 12 11 9 14 14 C 1.50692 * 120.00171 * 179.97438 * 12 11 9 15 15 S 1.81001 * 109.47153 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00186 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00043 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00258 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00286 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47120 * 89.99582 * 20 18 16 22 22 H 1.48496 * 109.47117 * 209.99771 * 20 18 16 23 23 H 1.48496 * 109.46915 * 329.99931 * 20 18 16 24 24 C 1.47421 * 125.65045 * 185.04864 * 6 4 2 25 25 C 1.53000 * 109.47109 * 120.00314 * 2 1 3 26 26 C 1.52994 * 117.49670 * 248.74452 * 25 2 1 27 27 C 1.52993 * 117.50070 * 180.08371 * 25 2 1 28 28 H 1.08994 * 109.47082 * 55.01981 * 1 2 3 29 29 H 1.08999 * 109.47325 * 175.02495 * 1 2 3 30 30 H 1.09002 * 109.46921 * 295.02351 * 1 2 3 31 31 H 1.09001 * 109.88543 * 298.40273 * 7 6 4 32 32 H 1.09004 * 109.87552 * 59.56506 * 7 6 4 33 33 H 1.08998 * 110.85356 * 219.67173 * 8 7 6 34 34 H 1.09000 * 110.66463 * 96.52729 * 8 7 6 35 35 H 1.09006 * 109.47053 * 307.77882 * 10 9 8 36 36 H 1.08997 * 109.47413 * 67.77954 * 10 9 8 37 37 H 1.09005 * 109.47160 * 187.78265 * 10 9 8 38 38 H 0.97004 * 120.00109 * 112.19820 * 11 9 8 39 39 H 1.08995 * 109.47432 * 300.00093 * 14 12 11 40 40 H 1.09005 * 109.47132 * 60.00238 * 14 12 11 41 41 H 0.97003 * 120.00572 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36828 * 322.92649 * 24 6 4 43 43 H 1.08995 * 110.36882 * 85.24697 * 24 6 4 44 44 H 1.09000 * 115.55237 * 34.41225 * 25 2 1 45 45 H 1.08998 * 117.50454 * 0.02562 * 26 25 2 46 46 H 1.09006 * 117.49982 * 145.02527 * 26 25 2 47 47 H 1.08997 * 117.50301 * 214.98031 * 27 25 2 48 48 H 1.09004 * 117.50027 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.1492 -1.9176 -1.2285 6 7 2.3516 -0.0043 -2.3332 7 6 2.3519 1.4619 -2.4414 8 6 2.8097 1.8155 -3.8722 9 6 3.5772 0.5430 -4.3182 10 6 3.5493 0.3899 -5.8402 11 7 4.9549 0.5593 -3.8201 12 6 5.8332 1.4636 -4.2969 13 8 5.4829 2.2642 -5.1379 14 6 7.2502 1.4807 -3.7842 15 16 8.1750 2.7990 -4.6106 16 6 9.7486 2.5955 -3.8446 17 1 9.8928 1.8225 -3.1041 18 6 10.8026 3.4291 -4.1919 19 7 10.6267 4.3714 -5.0939 20 14 12.4708 3.2138 -3.3792 21 1 13.2885 2.2613 -4.1725 22 1 13.1629 4.5259 -3.3146 23 1 12.2868 2.6828 -2.0047 24 6 2.7521 -0.5743 -3.6324 25 6 2.0400 -0.7213 1.2492 26 6 2.7394 0.1230 2.3164 27 6 3.5550 -0.8265 1.4353 28 1 -0.3633 0.5891 -0.8420 29 1 -0.3634 -1.0238 -0.0891 30 1 -0.3633 0.4347 0.9312 31 1 1.3474 1.8469 -2.2657 32 1 3.0461 1.8869 -1.7164 33 1 3.4707 2.6821 -3.8651 34 1 1.9500 1.9935 -4.5182 35 1 2.5195 0.4496 -6.1926 36 1 4.1362 1.1870 -6.2965 37 1 3.9722 -0.5762 -6.1160 38 1 5.2350 -0.0808 -3.1472 39 1 7.2454 1.6597 -2.7090 40 1 7.7229 0.5204 -3.9905 41 1 11.3634 4.9538 -5.3370 42 1 3.3662 -1.4626 -3.4839 43 1 1.8720 -0.8159 -4.2282 44 1 1.4319 -1.5595 1.5894 45 1 2.8358 1.1924 2.1288 46 1 2.5917 -0.1600 3.3586 47 1 3.9435 -1.7336 1.8981 48 1 4.1884 -0.3814 0.6679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689700484.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -72.908090 kcal Electronic energy + Delta-G solvation = -27808.776390 eV Core-core repulsion = 23989.572376 eV Total energy + Delta-G solvation = -3819.204014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82008 -40.68185 -38.88816 -37.82127 -35.32887 -34.59114 -33.47544 -32.67595 -30.80617 -30.01976 -27.95664 -27.65927 -25.49742 -24.11019 -23.26773 -22.75712 -21.93670 -20.75211 -19.89058 -19.72424 -18.42535 -17.84426 -17.55978 -16.90724 -16.88470 -16.55192 -16.27449 -16.04656 -15.73635 -15.48847 -15.03261 -14.75051 -14.59757 -14.23398 -14.07871 -14.03100 -13.69201 -13.66566 -13.52794 -13.16955 -13.13114 -13.06287 -12.90769 -12.74810 -12.62150 -12.43744 -12.36806 -12.31044 -11.95754 -11.93709 -11.73013 -11.41121 -11.15190 -11.12260 -10.71480 -10.59759 -10.28564 -10.13236 -9.72208 -8.65471 -8.35730 -6.12552 1.25956 1.40984 1.45568 1.56098 1.56892 1.62473 1.85245 2.21277 2.27649 2.84761 2.98437 3.21006 3.31387 3.51413 3.55254 3.72783 3.85984 3.90882 3.93919 4.13375 4.16055 4.22429 4.26147 4.31864 4.33939 4.45146 4.50239 4.54088 4.63251 4.70429 4.76246 4.77334 4.83243 4.86599 4.89340 4.98241 5.02130 5.10048 5.16290 5.20722 5.22301 5.32174 5.36826 5.41007 5.57451 6.18764 6.40695 6.48688 7.06098 7.10159 7.23873 8.73222 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.002704 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.459239 B =10351.381423 C =11847.182860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 H 0.104 0.896 4 C 0.534 3.466 5 O -0.576 6.576 6 N -0.618 5.618 7 C 0.104 3.896 8 C -0.134 4.134 9 C 0.163 3.837 10 C -0.155 4.155 11 N -0.706 5.706 12 C 0.542 3.458 13 O -0.543 6.543 14 C -0.134 4.134 15 S -0.137 6.137 16 C -0.549 4.549 17 H 0.079 0.921 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 0.995 3.005 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.260 1.260 24 C 0.111 3.889 25 C -0.141 4.141 26 C -0.158 4.158 27 C -0.192 4.192 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.407 0.593 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.271 0.729 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.801 -9.250 11.348 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 H 0.122 0.878 4 C 0.324 3.676 5 O -0.455 6.455 6 N -0.351 5.351 7 C -0.018 4.018 8 C -0.172 4.172 9 C 0.076 3.924 10 C -0.213 4.213 11 N -0.360 5.360 12 C 0.328 3.672 13 O -0.420 6.420 14 C -0.285 4.285 15 S 0.090 5.910 16 C -0.697 4.697 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.817 3.183 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.012 4.012 25 C -0.160 4.160 26 C -0.195 4.195 27 C -0.229 4.229 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.243 0.757 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.110 0.890 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.297 -8.466 9.935 26.705 hybrid contribution 1.981 -1.210 1.297 2.659 sum -21.317 -9.675 11.232 25.965 Atomic orbital electron populations 1.21668 0.90589 1.02589 1.04139 1.20941 0.98938 0.99808 0.89743 0.87803 1.20821 0.76164 0.86884 0.83706 1.90683 1.55206 1.15962 1.83651 1.48619 1.67417 1.08061 1.11044 1.22181 1.02898 0.79125 0.97620 1.23025 1.00826 0.97562 0.95824 1.21452 0.80509 0.95680 0.94755 1.22040 1.03971 1.02688 0.92641 1.45799 1.10221 1.35740 1.44222 1.19820 0.86128 0.80245 0.80979 1.90657 1.79029 1.39817 1.32542 1.23400 0.95796 1.04587 1.04732 1.85427 1.07749 1.41681 1.56108 1.23201 0.96800 1.21704 1.27990 0.90334 1.26067 1.03428 0.93882 0.95547 1.70162 1.33955 1.19025 1.31427 0.85003 0.76513 0.77975 0.78815 1.19406 1.20137 1.18398 1.22473 0.99100 0.95554 0.84111 1.22056 0.95090 1.02204 0.96656 1.23153 1.02076 0.97709 0.96516 1.22899 0.93906 1.02405 1.03662 0.91024 0.92975 0.89346 0.88291 0.91334 0.91013 0.87534 0.89014 0.92199 0.92045 0.75671 0.87919 0.88019 0.91951 0.90583 0.87956 0.87605 0.87721 0.87335 0.88970 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.16 71.98 0.66 -0.76 16 2 C -0.07 -1.06 2.58 -11.54 -0.03 -1.09 16 3 H 0.10 1.21 6.69 -2.39 -0.02 1.19 16 4 C 0.53 10.89 6.49 87.66 0.57 11.46 16 5 O -0.58 -16.33 16.69 -3.04 -0.05 -16.38 16 6 N -0.62 -10.69 3.33 -811.79 -2.70 -13.39 16 7 C 0.10 1.48 5.99 86.73 0.52 2.00 16 8 C -0.13 -2.41 5.86 31.78 0.19 -2.23 16 9 C 0.16 3.27 0.83 4.99 0.00 3.27 16 10 C -0.16 -3.26 8.58 71.98 0.62 -2.65 16 11 N -0.71 -17.29 5.18 -416.67 -2.16 -19.45 16 12 C 0.54 18.65 7.21 87.65 0.63 19.28 16 13 O -0.54 -22.40 12.73 -3.04 -0.04 -22.44 16 14 C -0.13 -5.22 6.16 71.23 0.44 -4.78 16 15 S -0.14 -7.41 20.57 -56.49 -1.16 -8.57 16 16 C -0.55 -31.19 9.50 67.95 0.65 -30.54 16 17 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 18 C 0.02 0.89 5.49 84.86 0.47 1.36 16 19 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 20 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 24 C 0.11 1.92 5.94 86.85 0.52 2.44 16 25 C -0.14 -2.23 4.67 -10.80 -0.05 -2.28 16 26 C -0.16 -2.02 10.18 30.62 0.31 -1.71 16 27 C -0.19 -3.40 9.87 30.62 0.30 -3.10 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.03 7.91 -2.38 -0.02 1.01 16 33 H 0.07 1.76 6.92 -2.39 -0.02 1.75 16 34 H 0.11 1.49 7.99 -2.39 -0.02 1.48 16 35 H 0.09 1.40 8.08 -2.38 -0.02 1.38 16 36 H 0.06 1.73 5.92 -2.39 -0.01 1.72 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.41 8.68 8.53 -92.71 -0.79 7.88 16 39 H 0.10 3.68 8.14 -2.40 -0.02 3.67 16 40 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 43 H 0.10 1.46 8.04 -2.39 -0.02 1.44 16 44 H 0.11 1.74 8.11 -2.39 -0.02 1.72 16 45 H 0.10 1.16 8.05 -2.39 -0.02 1.14 16 46 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 48 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -76.22 402.84 2.15 -74.07 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.16 Total: 24.94 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.79 Total: -9.32 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -4.57 Total: -87.81 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.09 Total: -38.81 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.16 Total: -8.57 kcal Total: -76.22 2.15 -74.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689700484.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.157 kcal (2) G-P(sol) polarization free energy of solvation -76.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds