Wall clock time and date at job start Sat Apr 11 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 C 1.52997 * 110.64154 * 56.85616 * 7 6 4 9 9 C 1.55155 * 110.72033 * 179.97438 * 7 6 4 10 10 C 1.54901 * 101.58329 * 82.85972 * 9 7 6 11 11 N 1.47423 * 104.83537 * 37.00712 * 10 9 7 12 12 C 1.34778 * 125.65259 * 155.90101 * 11 10 9 13 13 O 1.21277 * 120.00156 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.99525 * 359.97438 * 12 11 10 15 15 S 1.81007 * 109.47067 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00161 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00134 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99840 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47542 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47301 * 119.99916 * 20 18 16 23 23 H 1.48501 * 109.47152 * 239.99807 * 20 18 16 24 24 C 1.47023 * 108.70221 * 335.87722 * 11 10 9 25 25 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 26 26 C 1.53007 * 117.49549 * 128.74897 * 25 2 1 27 27 C 1.53001 * 117.49532 * 60.09201 * 25 2 1 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 32 32 H 1.08994 * 109.47468 * 60.69799 * 8 7 6 33 33 H 1.08996 * 109.47016 * 180.70479 * 8 7 6 34 34 H 1.09000 * 109.46810 * 300.69762 * 8 7 6 35 35 H 1.09001 * 110.99989 * 200.93363 * 9 7 6 36 36 H 1.09004 * 111.00628 * 324.74567 * 9 7 6 37 37 H 1.08999 * 110.36853 * 155.84880 * 10 9 7 38 38 H 1.08999 * 110.36840 * 278.16618 * 10 9 7 39 39 H 1.09006 * 109.47599 * 299.99274 * 14 12 11 40 40 H 1.08997 * 109.47964 * 59.99499 * 14 12 11 41 41 H 0.96996 * 120.00381 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.87968 * 241.64043 * 24 11 10 43 43 H 1.08995 * 109.88605 * 120.47350 * 24 11 10 44 44 H 1.08998 * 115.55045 * 274.42071 * 25 2 1 45 45 H 1.08997 * 117.49929 * 359.97438 * 26 25 2 46 46 H 1.08997 * 117.49703 * 145.02482 * 26 25 2 47 47 H 1.09002 * 117.49861 * 214.97615 * 27 25 2 48 48 H 1.09002 * 117.50174 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 3.7231 -1.0235 3.6391 9 6 1.6946 -0.2312 4.9368 10 6 0.2746 -0.8309 5.0897 11 7 0.4101 -2.2356 4.6633 12 6 -0.3948 -3.2507 5.0353 13 8 -0.1884 -4.3715 4.6205 14 6 -1.5511 -2.9928 5.9666 15 16 -2.4354 -4.5420 6.2739 16 6 -3.6969 -3.9640 7.3597 17 1 -3.7374 -2.9200 7.6332 18 6 -4.6381 -4.8507 7.8644 19 7 -4.5884 -6.1233 7.5314 20 14 -5.9759 -4.2379 9.0149 21 1 -5.8129 -2.7777 9.2304 22 1 -7.3070 -4.5043 8.4128 23 1 -5.8711 -4.9446 10.3168 24 6 1.5685 -2.3458 3.7646 25 6 2.0401 -0.7213 -1.2492 26 6 3.0765 0.0039 -2.1100 27 6 1.6375 -0.1484 -2.6096 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1492 0.5389 2.5435 32 1 4.1418 -0.0173 3.6291 33 1 4.0650 -1.5506 4.5297 34 1 4.0507 -1.5622 2.7499 35 1 2.3204 -0.4859 5.7922 36 1 1.6502 0.8487 4.7956 37 1 -0.0490 -0.7796 6.1293 38 1 -0.4305 -0.3053 4.4457 39 1 -1.1764 -2.5948 6.9097 40 1 -2.2300 -2.2713 5.5120 41 1 -5.2458 -6.7430 7.8844 42 1 1.2438 -2.6875 2.7817 43 1 2.2954 -3.0434 4.1805 44 1 2.1253 -1.8047 -1.1646 45 1 3.3945 0.9950 -1.7866 46 1 3.8433 -0.6024 -2.5921 47 1 1.4584 -0.8548 -3.4201 48 1 1.0090 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689707107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:57 Heat of formation + Delta-G solvation = -50.285048 kcal Electronic energy + Delta-G solvation = -27586.299834 eV Core-core repulsion = 23768.076829 eV Total energy + Delta-G solvation = -3818.223005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96289 -39.48054 -37.98104 -37.03674 -34.40798 -32.94523 -32.43260 -31.00653 -29.84224 -29.37380 -26.17790 -25.50627 -25.34799 -23.41186 -22.61378 -22.26530 -20.12166 -19.92555 -19.27370 -17.90698 -17.55401 -16.75369 -16.51123 -15.81613 -15.49604 -15.37427 -14.81459 -14.74637 -14.60332 -14.10964 -14.02924 -13.85638 -13.76569 -13.39871 -12.99216 -12.88927 -12.68168 -12.51874 -12.45593 -12.35861 -12.21054 -11.79949 -11.77358 -11.74230 -11.54976 -11.29424 -11.11510 -11.07705 -11.01556 -10.76735 -10.67283 -10.34296 -9.82127 -9.75880 -9.49262 -9.28260 -9.07831 -8.49124 -8.22361 -6.50415 -6.21935 -3.92558 2.40665 2.75286 2.92754 3.08852 3.20886 3.25616 3.30492 3.49516 3.61562 4.00409 4.19706 4.21852 4.28408 4.34536 4.54280 4.57627 4.72345 4.85414 4.96261 5.00262 5.03374 5.06970 5.11582 5.13109 5.28516 5.31662 5.37061 5.37911 5.45469 5.50504 5.53940 5.59005 5.61185 5.64993 5.69443 5.78440 5.80713 5.88989 5.93838 6.00865 6.04171 6.12014 6.30502 6.42755 7.22332 7.59126 7.67577 7.99552 8.34901 8.58071 9.23173 10.85566 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002300 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.821706 B =12171.807710 C =12750.272294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 H 0.095 0.905 4 C 0.523 3.477 5 O -0.526 6.526 6 N -0.719 5.719 7 C 0.164 3.836 8 C -0.156 4.156 9 C -0.134 4.134 10 C 0.100 3.900 11 N -0.626 5.626 12 C 0.547 3.453 13 O -0.513 6.513 14 C -0.145 4.145 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.110 3.890 25 C -0.135 4.135 26 C -0.178 4.178 27 C -0.178 4.178 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.118 20.794 -13.821 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.113 0.887 4 C 0.309 3.691 5 O -0.401 6.401 6 N -0.372 5.372 7 C 0.077 3.923 8 C -0.214 4.214 9 C -0.172 4.172 10 C -0.024 4.024 11 N -0.364 5.364 12 C 0.335 3.665 13 O -0.387 6.387 14 C -0.296 4.296 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.014 4.014 25 C -0.153 4.153 26 C -0.215 4.215 27 C -0.215 4.215 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.135 0.865 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.789 18.136 -14.471 28.065 hybrid contribution -1.433 2.164 1.291 2.899 sum 14.356 20.299 -13.180 28.140 Atomic orbital electron populations 1.21767 0.92336 1.03402 1.02565 1.20865 0.97536 0.99758 0.91858 0.88689 1.20519 0.79774 0.84524 0.84277 1.90683 1.37138 1.25764 1.86547 1.46039 1.54089 1.32062 1.05030 1.21251 0.94736 0.91795 0.84504 1.22095 0.92390 1.02622 1.04295 1.23143 0.96647 1.00342 0.97088 1.22293 0.96645 0.82281 1.01174 1.48511 1.30388 1.08255 1.49231 1.20039 0.82245 0.83282 0.80911 1.90721 1.71315 1.21786 1.54838 1.23499 0.98067 1.07765 1.00250 1.85452 1.32151 1.04209 1.61619 1.22891 1.15104 0.97441 1.32795 0.90908 1.25004 0.97573 0.94573 0.96511 1.70028 1.35172 1.02439 1.42582 0.86110 0.80618 0.78817 0.79898 1.19636 1.20562 1.20564 1.22206 0.88229 0.95898 0.95055 1.22052 1.03340 1.00271 0.89650 1.23015 0.92601 1.01738 1.04115 1.22989 0.98065 1.03251 0.97231 0.91593 0.92089 0.91252 0.76544 0.92197 0.91324 0.89691 0.88657 0.89225 0.89874 0.91496 0.89325 0.89407 0.92222 0.90801 0.90710 0.86471 0.88995 0.88744 0.88634 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.93 37.16 0.33 -0.61 16 2 C -0.08 -0.57 2.88 -91.77 -0.26 -0.84 16 3 H 0.10 0.51 7.90 -51.93 -0.41 0.10 16 4 C 0.52 5.15 6.37 -10.98 -0.07 5.08 16 5 O -0.53 -7.15 12.65 5.56 0.07 -7.08 16 6 N -0.72 -5.68 5.03 -45.92 -0.23 -5.91 16 7 C 0.16 1.51 0.81 -129.99 -0.10 1.41 16 8 C -0.16 -1.39 8.38 37.16 0.31 -1.08 16 9 C -0.13 -0.95 6.07 -24.59 -0.15 -1.10 16 10 C 0.10 0.99 6.67 -2.53 -0.02 0.97 16 11 N -0.63 -9.28 3.33 -170.53 -0.57 -9.85 16 12 C 0.55 10.92 7.87 -10.99 -0.09 10.84 16 13 O -0.51 -12.50 16.19 5.56 0.09 -12.41 16 14 C -0.15 -3.01 5.16 36.00 0.19 -2.82 16 15 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 20 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.11 1.51 5.83 -3.06 -0.02 1.50 16 25 C -0.13 -1.12 4.75 -90.62 -0.43 -1.56 16 26 C -0.18 -1.25 10.18 -26.69 -0.27 -1.52 16 27 C -0.18 -1.17 9.74 -26.69 -0.26 -1.43 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 30 H 0.07 0.38 7.29 -51.93 -0.38 0.00 16 31 H 0.40 2.06 7.91 -40.82 -0.32 1.73 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.08 0.96 6.03 -51.93 -0.31 0.65 16 35 H 0.09 0.65 8.05 -51.93 -0.42 0.24 16 36 H 0.09 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.68 7.85 -51.91 -0.41 1.27 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.21 6.90 -51.93 -0.36 0.85 16 43 H 0.07 1.11 7.81 -51.93 -0.41 0.70 16 44 H 0.12 1.25 7.47 -51.93 -0.39 0.87 16 45 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.51 7.61 -51.93 -0.40 0.12 16 LS Contribution 399.57 15.07 6.02 6.02 Total: -1.00 -36.62 399.57 -9.68 -46.30 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.92 Total: 0.16 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.64 Total: -4.14 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.06 Total: -41.31 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.16 Total: -19.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.62 -9.68 -46.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689707107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.989 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds