Wall clock time and date at job start Sat Apr 11 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 C 1.52997 * 110.64154 * 56.85616 * 7 6 4 9 9 C 1.55155 * 110.72033 * 179.97438 * 7 6 4 10 10 C 1.54901 * 101.58329 * 82.85972 * 9 7 6 11 11 N 1.47423 * 104.83537 * 37.00712 * 10 9 7 12 12 C 1.34778 * 125.65259 * 155.90101 * 11 10 9 13 13 O 1.21277 * 120.00156 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.99525 * 359.97438 * 12 11 10 15 15 S 1.81007 * 109.47067 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00161 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00134 * 180.02562 * 16 15 14 19 19 N 1.31630 * 119.99840 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47542 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47301 * 119.99916 * 20 18 16 23 23 H 1.48501 * 109.47152 * 239.99807 * 20 18 16 24 24 C 1.47023 * 108.70221 * 335.87722 * 11 10 9 25 25 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 26 26 C 1.53007 * 117.49549 * 128.74897 * 25 2 1 27 27 C 1.53001 * 117.49532 * 60.09201 * 25 2 1 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 32 32 H 1.08994 * 109.47468 * 60.69799 * 8 7 6 33 33 H 1.08996 * 109.47016 * 180.70479 * 8 7 6 34 34 H 1.09000 * 109.46810 * 300.69762 * 8 7 6 35 35 H 1.09001 * 110.99989 * 200.93363 * 9 7 6 36 36 H 1.09004 * 111.00628 * 324.74567 * 9 7 6 37 37 H 1.08999 * 110.36853 * 155.84880 * 10 9 7 38 38 H 1.08999 * 110.36840 * 278.16618 * 10 9 7 39 39 H 1.09006 * 109.47599 * 299.99274 * 14 12 11 40 40 H 1.08997 * 109.47964 * 59.99499 * 14 12 11 41 41 H 0.96996 * 120.00381 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.87968 * 241.64043 * 24 11 10 43 43 H 1.08995 * 109.88605 * 120.47350 * 24 11 10 44 44 H 1.08998 * 115.55045 * 274.42071 * 25 2 1 45 45 H 1.08997 * 117.49929 * 359.97438 * 26 25 2 46 46 H 1.08997 * 117.49703 * 145.02482 * 26 25 2 47 47 H 1.09002 * 117.49861 * 214.97615 * 27 25 2 48 48 H 1.09002 * 117.50174 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 3.7231 -1.0235 3.6391 9 6 1.6946 -0.2312 4.9368 10 6 0.2746 -0.8309 5.0897 11 7 0.4101 -2.2356 4.6633 12 6 -0.3948 -3.2507 5.0353 13 8 -0.1884 -4.3715 4.6205 14 6 -1.5511 -2.9928 5.9666 15 16 -2.4354 -4.5420 6.2739 16 6 -3.6969 -3.9640 7.3597 17 1 -3.7374 -2.9200 7.6332 18 6 -4.6381 -4.8507 7.8644 19 7 -4.5884 -6.1233 7.5314 20 14 -5.9759 -4.2379 9.0149 21 1 -5.8129 -2.7777 9.2304 22 1 -7.3070 -4.5043 8.4128 23 1 -5.8711 -4.9446 10.3168 24 6 1.5685 -2.3458 3.7646 25 6 2.0401 -0.7213 -1.2492 26 6 3.0765 0.0039 -2.1100 27 6 1.6375 -0.1484 -2.6096 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.1492 0.5389 2.5435 32 1 4.1418 -0.0173 3.6291 33 1 4.0650 -1.5506 4.5297 34 1 4.0507 -1.5622 2.7499 35 1 2.3204 -0.4859 5.7922 36 1 1.6502 0.8487 4.7956 37 1 -0.0490 -0.7796 6.1293 38 1 -0.4305 -0.3053 4.4457 39 1 -1.1764 -2.5948 6.9097 40 1 -2.2300 -2.2713 5.5120 41 1 -5.2458 -6.7430 7.8844 42 1 1.2438 -2.6875 2.7817 43 1 2.2954 -3.0434 4.1805 44 1 2.1253 -1.8047 -1.1646 45 1 3.3945 0.9950 -1.7866 46 1 3.8433 -0.6024 -2.5921 47 1 1.4584 -0.8548 -3.4201 48 1 1.0090 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689707107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:56 Heat of formation + Delta-G solvation = -75.582058 kcal Electronic energy + Delta-G solvation = -27587.396795 eV Core-core repulsion = 23768.076829 eV Total energy + Delta-G solvation = -3819.319966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85042 -40.61769 -39.01184 -37.90818 -35.42715 -34.59493 -33.70643 -31.89289 -30.94521 -30.54656 -27.79112 -27.07821 -26.05075 -24.36183 -23.16761 -22.95380 -21.02469 -20.81647 -20.39437 -19.62599 -18.46666 -18.00405 -17.72481 -16.89905 -16.86704 -16.46487 -16.19257 -16.02911 -15.70185 -15.40334 -14.98333 -14.75707 -14.67746 -14.47237 -14.33851 -13.93166 -13.71160 -13.52875 -13.30397 -13.28050 -13.14700 -13.05278 -12.91741 -12.88462 -12.61563 -12.43277 -12.37220 -12.29507 -11.91735 -11.84324 -11.72351 -11.26569 -11.16739 -11.04663 -10.91161 -10.54186 -10.28880 -10.17027 -9.76333 -8.70494 -8.35373 -6.14851 1.21625 1.41860 1.44013 1.51460 1.56646 1.65462 2.01116 2.12588 2.26218 2.92757 2.98956 3.16708 3.32504 3.47416 3.65101 3.69181 3.84487 3.85065 3.99787 4.12792 4.18822 4.21032 4.29864 4.33434 4.40760 4.46529 4.49513 4.58837 4.64737 4.69129 4.76504 4.78300 4.81607 4.85992 4.95835 4.99300 5.05699 5.07792 5.24164 5.26047 5.28804 5.31325 5.36107 5.41135 5.56957 6.19305 6.33724 6.59512 7.05409 7.06586 7.30553 8.74342 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002300 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.821706 B =12171.807710 C =12750.272294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 H 0.127 0.873 4 C 0.515 3.485 5 O -0.572 6.572 6 N -0.705 5.705 7 C 0.172 3.828 8 C -0.151 4.151 9 C -0.116 4.116 10 C 0.085 3.915 11 N -0.614 5.614 12 C 0.541 3.459 13 O -0.573 6.573 14 C -0.114 4.114 15 S -0.159 6.159 16 C -0.541 4.541 17 H 0.086 0.914 18 C 0.010 3.990 19 N -0.913 5.913 20 Si 1.002 2.998 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.108 3.892 25 C -0.157 4.157 26 C -0.176 4.176 27 C -0.166 4.166 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.418 0.582 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.721 26.106 -12.858 32.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 H 0.145 0.855 4 C 0.303 3.697 5 O -0.450 6.450 6 N -0.359 5.359 7 C 0.085 3.915 8 C -0.209 4.209 9 C -0.154 4.154 10 C -0.037 4.037 11 N -0.349 5.349 12 C 0.330 3.670 13 O -0.452 6.452 14 C -0.265 4.265 15 S 0.068 5.932 16 C -0.689 4.689 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.824 3.176 21 H -0.176 1.176 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.016 4.016 25 C -0.176 4.176 26 C -0.213 4.213 27 C -0.202 4.202 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.257 0.743 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.128 0.872 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.402 23.549 -13.508 31.213 hybrid contribution -1.192 0.524 0.891 1.577 sum 14.210 24.073 -12.618 30.670 Atomic orbital electron populations 1.21778 0.91705 1.01955 1.04364 1.20866 0.97813 1.00605 0.89718 0.85520 1.21106 0.79035 0.84006 0.85539 1.90680 1.39285 1.27841 1.87241 1.45905 1.53790 1.32180 1.04034 1.21147 0.94686 0.89346 0.86339 1.22039 0.92001 1.03771 1.03085 1.23189 0.94230 1.02420 0.95525 1.22799 0.99414 0.79166 1.02294 1.48456 1.29065 1.09509 1.47900 1.19960 0.82724 0.83520 0.80812 1.90696 1.72924 1.24469 1.57128 1.23268 0.97850 1.03633 1.01742 1.85729 1.34243 1.10784 1.62468 1.23210 1.15018 0.98066 1.32599 0.89590 1.26197 1.00342 0.94593 0.98293 1.70205 1.36460 1.04130 1.44188 0.84854 0.76656 0.79061 0.77046 1.17649 1.19997 1.20006 1.22287 0.87467 0.99058 0.92785 1.21971 1.05533 0.98673 0.91413 1.23099 0.92652 1.02129 1.03380 1.23067 0.97982 1.03516 0.95672 0.94619 0.90224 0.89521 0.74338 0.89559 0.90984 0.92608 0.87771 0.84681 0.88737 0.89185 0.87018 0.87262 0.92015 0.94196 0.92655 0.90192 0.87236 0.89441 0.88898 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.93 71.98 0.64 -0.95 16 2 C -0.07 -0.89 2.88 -11.54 -0.03 -0.93 16 3 H 0.13 0.87 7.90 -2.39 -0.02 0.85 16 4 C 0.52 9.87 6.37 87.66 0.56 10.43 16 5 O -0.57 -16.53 12.65 -3.02 -0.04 -16.57 16 6 N -0.71 -9.41 5.03 -417.57 -2.10 -11.52 16 7 C 0.17 2.84 0.81 4.79 0.00 2.84 16 8 C -0.15 -2.46 8.38 71.98 0.60 -1.86 16 9 C -0.12 -1.11 6.07 31.98 0.19 -0.91 16 10 C 0.08 1.36 6.67 86.85 0.58 1.94 16 11 N -0.61 -17.82 3.33 -811.82 -2.70 -20.52 16 12 C 0.54 22.07 7.87 87.66 0.69 22.76 16 13 O -0.57 -29.72 16.19 -3.02 -0.05 -29.77 16 14 C -0.11 -4.66 5.16 71.23 0.37 -4.29 16 15 S -0.16 -9.09 20.57 -56.49 -1.16 -10.26 16 16 C -0.54 -30.93 9.50 67.96 0.65 -30.29 16 17 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 18 C 0.01 0.58 5.49 84.86 0.47 1.05 16 19 N -0.91 -56.74 13.22 21.65 0.29 -56.46 16 20 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 21 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 C 0.11 3.05 5.83 86.73 0.51 3.56 16 25 C -0.16 -2.64 4.75 -10.79 -0.05 -2.69 16 26 C -0.18 -2.30 10.18 30.62 0.31 -1.99 16 27 C -0.17 -1.97 9.74 30.62 0.30 -1.67 16 28 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.59 7.56 -2.39 -0.02 0.57 16 30 H 0.09 0.70 7.29 -2.39 -0.02 0.68 16 31 H 0.42 2.44 7.91 -92.70 -0.73 1.71 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 34 H 0.05 1.29 6.03 -2.39 -0.01 1.27 16 35 H 0.10 0.93 8.05 -2.39 -0.02 0.91 16 36 H 0.14 0.22 8.07 -2.38 -0.02 0.20 16 37 H 0.09 1.40 7.48 -2.39 -0.02 1.38 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.11 4.04 7.85 -2.39 -0.02 4.02 16 40 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.04 1.40 6.90 -2.39 -0.02 1.39 16 43 H 0.06 1.76 7.81 -2.39 -0.02 1.74 16 44 H 0.08 1.93 7.47 -2.39 -0.02 1.92 16 45 H 0.11 1.04 8.05 -2.39 -0.02 1.02 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.11 0.90 7.61 -2.39 -0.02 0.88 16 Total: -1.00 -88.13 399.57 2.27 -85.87 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.22 Total: 16.78 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.78 Total: -3.00 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -4.52 Total: -88.50 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -0.09 Total: -46.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.16 Total: -10.26 kcal Total: -88.13 2.27 -85.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689707107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.284 kcal (2) G-P(sol) polarization free energy of solvation -88.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds