Wall clock time and date at job start Sat Apr 11 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46889 * 2 1 4 4 C 1.50709 * 109.46809 * 119.99624 * 2 1 3 5 5 O 1.21280 * 119.99786 * 120.00054 * 4 2 1 6 6 N 1.34777 * 119.99820 * 299.99696 * 4 2 1 7 7 C 1.46504 * 119.99427 * 180.02562 * 6 4 2 8 8 C 1.52997 * 110.64182 * 300.69873 * 7 6 4 9 9 C 1.55163 * 110.86719 * 177.45118 * 7 6 4 10 10 C 1.54904 * 101.58073 * 277.06821 * 9 7 6 11 11 N 1.47421 * 104.83620 * 322.98869 * 10 9 7 12 12 C 1.34773 * 125.65096 * 204.16460 * 11 10 9 13 13 O 1.21283 * 119.99864 * 179.97438 * 12 11 10 14 14 C 1.50698 * 120.00025 * 359.96460 * 12 11 10 15 15 S 1.81001 * 109.46997 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99893 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00127 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00031 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99901 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46925 * 90.00759 * 20 18 16 22 22 H 1.48498 * 109.46892 * 210.00614 * 20 18 16 23 23 H 1.48496 * 109.47244 * 330.00461 * 20 18 16 24 24 C 1.47025 * 108.70178 * 24.13268 * 11 10 9 25 25 C 1.52997 * 109.47121 * 239.99311 * 2 1 3 26 26 C 1.52996 * 117.49965 * 128.62094 * 25 2 1 27 27 C 1.53001 * 60.00242 * 252.51324 * 26 25 2 28 28 H 1.09005 * 109.47262 * 300.00344 * 1 2 3 29 29 H 1.08999 * 109.47347 * 60.00264 * 1 2 3 30 30 H 1.09001 * 109.47317 * 180.02562 * 1 2 3 31 31 H 0.96991 * 120.00318 * 0.02562 * 6 4 2 32 32 H 1.09002 * 109.47153 * 181.69032 * 8 7 6 33 33 H 1.09001 * 109.46832 * 61.69223 * 8 7 6 34 34 H 1.09004 * 109.47261 * 301.69204 * 8 7 6 35 35 H 1.08995 * 111.00334 * 35.14471 * 9 7 6 36 36 H 1.08999 * 111.00142 * 158.99183 * 9 7 6 37 37 H 1.09007 * 110.36208 * 204.15318 * 10 9 7 38 38 H 1.08996 * 110.45982 * 81.88497 * 10 9 7 39 39 H 1.09004 * 109.46639 * 299.99611 * 14 12 11 40 40 H 1.08998 * 109.47233 * 59.99413 * 14 12 11 41 41 H 0.97008 * 119.99525 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.88484 * 239.52534 * 24 11 10 43 43 H 1.08997 * 109.88424 * 118.35196 * 24 11 10 44 44 H 1.08998 * 115.55001 * 274.33119 * 25 2 1 45 45 H 1.09009 * 117.49416 * 0.02562 * 26 25 2 46 46 H 1.09001 * 117.50338 * 145.01882 * 26 25 2 47 47 H 1.08996 * 117.49614 * 252.51165 * 27 26 25 48 48 H 1.08999 * 117.50107 * 107.48922 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7067 -0.2498 2.4547 7 6 2.1955 -0.9401 3.6509 8 6 1.7151 -2.3926 3.6695 9 6 1.7495 -0.1977 4.9384 10 6 2.8327 0.9036 5.0533 11 7 4.0791 0.2553 4.6066 12 6 5.3270 0.6339 4.9469 13 8 6.2837 0.0238 4.5186 14 6 5.5336 1.8152 5.8595 15 16 7.3058 2.0687 6.1263 16 6 7.2570 3.4689 7.1949 17 1 6.3077 3.8957 7.4827 18 6 8.4387 4.0226 7.6676 19 7 9.5959 3.5020 7.3172 20 14 8.3870 5.5066 8.8011 21 1 8.3275 5.0494 10.2127 22 1 9.6077 6.3275 8.5977 23 1 7.1850 6.3225 8.4938 24 6 3.7353 -0.8731 3.7291 25 6 2.0400 -0.7214 -1.2491 26 6 3.0741 0.0049 -2.1116 27 6 1.6356 -0.1498 -2.6096 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.1488 0.5387 2.5436 32 1 2.0638 -2.8789 4.5805 33 1 2.1136 -2.9181 2.8017 34 1 0.6257 -2.4154 3.6395 35 1 0.7590 0.2398 4.8138 36 1 1.7753 -0.8628 5.8015 37 1 2.9274 1.2361 6.0871 38 1 2.5899 1.7459 4.4055 39 1 5.1033 2.7066 5.4029 40 1 5.0460 1.6253 6.8157 41 1 10.4217 3.8893 7.6474 42 1 4.1258 -1.8006 4.1476 43 1 4.1501 -0.7091 2.7346 44 1 2.1267 -1.8046 -1.1640 45 1 3.3914 0.9966 -1.7889 46 1 3.8416 -0.6004 -2.5941 47 1 1.4568 -0.8569 -3.4195 48 1 1.0063 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689707108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:00 Heat of formation + Delta-G solvation = -50.527379 kcal Electronic energy + Delta-G solvation = -27551.298823 eV Core-core repulsion = 23733.065309 eV Total energy + Delta-G solvation = -3818.233514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95960 -39.47291 -37.96949 -37.02310 -34.41965 -32.94059 -32.42884 -31.03148 -29.83712 -29.38298 -26.14798 -25.52714 -25.37803 -23.41331 -22.56460 -22.26078 -20.12355 -19.90945 -19.29887 -17.88734 -17.52165 -16.75276 -16.51079 -15.79975 -15.65268 -15.13623 -14.92364 -14.80563 -14.52932 -14.12543 -14.02038 -13.84933 -13.76709 -13.40877 -13.01766 -12.86568 -12.65754 -12.60795 -12.47425 -12.34680 -12.24863 -11.78075 -11.75211 -11.71440 -11.54817 -11.33067 -11.10230 -11.06573 -11.01775 -10.76921 -10.64929 -10.32590 -9.83126 -9.77600 -9.48218 -9.27948 -9.06735 -8.48304 -8.22449 -6.50053 -6.21413 -3.92180 2.41638 2.74979 2.93298 3.09467 3.21890 3.25671 3.29962 3.52151 3.61934 4.00736 4.20131 4.22275 4.29163 4.32693 4.55335 4.57901 4.73372 4.85974 4.97220 5.01104 5.01918 5.06869 5.09012 5.13521 5.26983 5.31535 5.33338 5.37810 5.45162 5.49964 5.54120 5.60488 5.62978 5.64654 5.69870 5.70400 5.83416 5.89534 5.95025 5.99997 6.02588 6.12304 6.30651 6.43367 7.22290 7.59123 7.68274 7.99860 8.35032 8.58724 9.23534 10.85998 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.002331 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.465823 B =12007.348284 C =12657.032099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.097 0.903 4 C 0.523 3.477 5 O -0.526 6.526 6 N -0.719 5.719 7 C 0.164 3.836 8 C -0.154 4.154 9 C -0.133 4.133 10 C 0.100 3.900 11 N -0.626 5.626 12 C 0.547 3.453 13 O -0.513 6.513 14 C -0.145 4.145 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.109 3.891 25 C -0.135 4.135 26 C -0.176 4.176 27 C -0.179 4.179 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.400 0.600 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.528 -6.800 -13.191 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.115 0.885 4 C 0.309 3.691 5 O -0.401 6.401 6 N -0.372 5.372 7 C 0.077 3.923 8 C -0.212 4.212 9 C -0.171 4.171 10 C -0.024 4.024 11 N -0.364 5.364 12 C 0.335 3.665 13 O -0.386 6.386 14 C -0.296 4.296 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.015 4.015 25 C -0.154 4.154 26 C -0.213 4.213 27 C -0.216 4.216 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.234 0.766 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.285 -8.394 -13.871 28.373 hybrid contribution -1.382 2.194 1.294 2.898 sum -24.667 -6.200 -12.577 28.374 Atomic orbital electron populations 1.21742 0.92548 1.02902 1.02553 1.20878 0.97331 1.00130 0.91918 0.88523 1.20505 0.79753 0.84553 0.84256 1.90694 1.36833 1.26012 1.86555 1.46034 1.54099 1.32077 1.05020 1.21248 0.93151 0.93369 0.84541 1.22076 1.01177 0.93982 1.03985 1.23135 0.98865 0.98069 0.97081 1.22292 0.83757 0.95356 1.00996 1.48514 1.05442 1.32289 1.50169 1.20041 0.80653 0.84982 0.80829 1.90722 1.39216 1.54963 1.53744 1.23499 1.08081 0.97575 1.00427 1.85450 0.94635 1.40172 1.63129 1.22849 0.95467 1.16144 1.33843 0.90964 1.25000 0.94546 0.97668 0.96410 1.70025 0.97449 1.40031 1.42722 0.86164 0.77803 0.81205 0.80294 1.20262 1.20743 1.19718 1.22218 0.93263 0.90393 0.95588 1.22024 1.03706 1.00106 0.89541 1.23028 0.92512 1.02015 1.03784 1.22973 0.98392 1.03169 0.97052 0.92165 0.91293 0.91876 0.76554 0.91302 0.90019 0.92143 0.89227 0.88642 0.89893 0.91506 0.89417 0.89328 0.92172 0.90712 0.90627 0.86578 0.88778 0.88626 0.88728 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.93 37.16 0.33 -0.35 16 2 C -0.08 -0.59 2.88 -91.77 -0.26 -0.86 16 3 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 4 C 0.52 5.18 6.37 -10.98 -0.07 5.11 16 5 O -0.53 -7.22 12.62 5.56 0.07 -7.15 16 6 N -0.72 -5.68 5.04 -45.90 -0.23 -5.91 16 7 C 0.16 1.51 0.81 -129.98 -0.11 1.40 16 8 C -0.15 -1.35 8.36 37.16 0.31 -1.04 16 9 C -0.13 -0.94 6.09 -24.58 -0.15 -1.09 16 10 C 0.10 1.00 6.67 -2.53 -0.02 0.98 16 11 N -0.63 -9.39 3.33 -170.52 -0.57 -9.96 16 12 C 0.55 11.01 7.87 -10.99 -0.09 10.92 16 13 O -0.51 -12.58 16.19 5.56 0.09 -12.49 16 14 C -0.15 -3.02 5.16 36.00 0.19 -2.84 16 15 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 16 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.11 1.52 5.78 -3.06 -0.02 1.50 16 25 C -0.14 -1.14 4.76 -90.62 -0.43 -1.57 16 26 C -0.18 -1.47 10.18 -26.73 -0.27 -1.75 16 27 C -0.18 -1.19 9.73 -26.73 -0.26 -1.45 16 28 H 0.06 0.21 7.56 -51.93 -0.39 -0.19 16 29 H 0.07 0.28 7.29 -51.93 -0.38 -0.10 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.40 2.04 7.90 -40.82 -0.32 1.71 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.08 0.91 6.27 -51.93 -0.33 0.58 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.39 8.06 -51.93 -0.42 -0.03 16 36 H 0.10 0.65 8.04 -51.93 -0.42 0.23 16 37 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.09 1.69 7.85 -51.92 -0.41 1.28 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.07 1.11 7.82 -51.93 -0.41 0.71 16 43 H 0.08 1.26 6.68 -51.93 -0.35 0.91 16 44 H 0.12 1.17 7.47 -51.93 -0.39 0.78 16 45 H 0.09 0.77 8.05 -51.92 -0.42 0.35 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.52 7.61 -51.93 -0.40 0.12 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -36.83 399.50 -9.68 -46.51 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.92 Total: 0.13 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.65 Total: -4.04 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.07 Total: -41.49 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.16 Total: -19.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.83 -9.68 -46.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689707108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.015 kcal (2) G-P(sol) polarization free energy of solvation -36.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds