Wall clock time and date at job start Sat Apr 11 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46889 * 2 1 4 4 C 1.50709 * 109.46809 * 119.99624 * 2 1 3 5 5 O 1.21280 * 119.99786 * 120.00054 * 4 2 1 6 6 N 1.34777 * 119.99820 * 299.99696 * 4 2 1 7 7 C 1.46504 * 119.99427 * 180.02562 * 6 4 2 8 8 C 1.52997 * 110.64182 * 300.69873 * 7 6 4 9 9 C 1.55163 * 110.86719 * 177.45118 * 7 6 4 10 10 C 1.54904 * 101.58073 * 277.06821 * 9 7 6 11 11 N 1.47421 * 104.83620 * 322.98869 * 10 9 7 12 12 C 1.34773 * 125.65096 * 204.16460 * 11 10 9 13 13 O 1.21283 * 119.99864 * 179.97438 * 12 11 10 14 14 C 1.50698 * 120.00025 * 359.96460 * 12 11 10 15 15 S 1.81001 * 109.46997 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99893 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00127 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00031 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99901 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46925 * 90.00759 * 20 18 16 22 22 H 1.48498 * 109.46892 * 210.00614 * 20 18 16 23 23 H 1.48496 * 109.47244 * 330.00461 * 20 18 16 24 24 C 1.47025 * 108.70178 * 24.13268 * 11 10 9 25 25 C 1.52997 * 109.47121 * 239.99311 * 2 1 3 26 26 C 1.52996 * 117.49965 * 128.62094 * 25 2 1 27 27 C 1.53001 * 60.00242 * 252.51324 * 26 25 2 28 28 H 1.09005 * 109.47262 * 300.00344 * 1 2 3 29 29 H 1.08999 * 109.47347 * 60.00264 * 1 2 3 30 30 H 1.09001 * 109.47317 * 180.02562 * 1 2 3 31 31 H 0.96991 * 120.00318 * 0.02562 * 6 4 2 32 32 H 1.09002 * 109.47153 * 181.69032 * 8 7 6 33 33 H 1.09001 * 109.46832 * 61.69223 * 8 7 6 34 34 H 1.09004 * 109.47261 * 301.69204 * 8 7 6 35 35 H 1.08995 * 111.00334 * 35.14471 * 9 7 6 36 36 H 1.08999 * 111.00142 * 158.99183 * 9 7 6 37 37 H 1.09007 * 110.36208 * 204.15318 * 10 9 7 38 38 H 1.08996 * 110.45982 * 81.88497 * 10 9 7 39 39 H 1.09004 * 109.46639 * 299.99611 * 14 12 11 40 40 H 1.08998 * 109.47233 * 59.99413 * 14 12 11 41 41 H 0.97008 * 119.99525 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.88484 * 239.52534 * 24 11 10 43 43 H 1.08997 * 109.88424 * 118.35196 * 24 11 10 44 44 H 1.08998 * 115.55001 * 274.33119 * 25 2 1 45 45 H 1.09009 * 117.49416 * 0.02562 * 26 25 2 46 46 H 1.09001 * 117.50338 * 145.01882 * 26 25 2 47 47 H 1.08996 * 117.49614 * 252.51165 * 27 26 25 48 48 H 1.08999 * 117.50107 * 107.48922 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7067 -0.2498 2.4547 7 6 2.1955 -0.9401 3.6509 8 6 1.7151 -2.3926 3.6695 9 6 1.7495 -0.1977 4.9384 10 6 2.8327 0.9036 5.0533 11 7 4.0791 0.2553 4.6066 12 6 5.3270 0.6339 4.9469 13 8 6.2837 0.0238 4.5186 14 6 5.5336 1.8152 5.8595 15 16 7.3058 2.0687 6.1263 16 6 7.2570 3.4689 7.1949 17 1 6.3077 3.8957 7.4827 18 6 8.4387 4.0226 7.6676 19 7 9.5959 3.5020 7.3172 20 14 8.3870 5.5066 8.8011 21 1 8.3275 5.0494 10.2127 22 1 9.6077 6.3275 8.5977 23 1 7.1850 6.3225 8.4938 24 6 3.7353 -0.8731 3.7291 25 6 2.0400 -0.7214 -1.2491 26 6 3.0741 0.0049 -2.1116 27 6 1.6356 -0.1498 -2.6096 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.1488 0.5387 2.5436 32 1 2.0638 -2.8789 4.5805 33 1 2.1136 -2.9181 2.8017 34 1 0.6257 -2.4154 3.6395 35 1 0.7590 0.2398 4.8138 36 1 1.7753 -0.8628 5.8015 37 1 2.9274 1.2361 6.0871 38 1 2.5899 1.7459 4.4055 39 1 5.1033 2.7066 5.4029 40 1 5.0460 1.6253 6.8157 41 1 10.4217 3.8893 7.6474 42 1 4.1258 -1.8006 4.1476 43 1 4.1501 -0.7091 2.7346 44 1 2.1267 -1.8046 -1.1640 45 1 3.3914 0.9966 -1.7889 46 1 3.8416 -0.6004 -2.5941 47 1 1.4568 -0.8569 -3.4195 48 1 1.0063 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689707108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:59 Heat of formation + Delta-G solvation = -76.007418 kcal Electronic energy + Delta-G solvation = -27552.403721 eV Core-core repulsion = 23733.065309 eV Total energy + Delta-G solvation = -3819.338411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85186 -40.61694 -39.01672 -37.91457 -35.44138 -34.59576 -33.68625 -31.88982 -30.95353 -30.55550 -27.78933 -27.05716 -26.02218 -24.36659 -23.19788 -22.95619 -21.03367 -20.80250 -20.41595 -19.63647 -18.43552 -17.99216 -17.72843 -16.90216 -16.87853 -16.51757 -16.16883 -16.01864 -15.73306 -15.34034 -15.08527 -14.71829 -14.68231 -14.46799 -14.27873 -13.93132 -13.73219 -13.50614 -13.30580 -13.20094 -13.14627 -13.11421 -12.89165 -12.85701 -12.63029 -12.42732 -12.37054 -12.31573 -11.93699 -11.80226 -11.74685 -11.28853 -11.15034 -11.04816 -10.93209 -10.56002 -10.29572 -10.16518 -9.76657 -8.70764 -8.35288 -6.15031 1.21329 1.42881 1.43890 1.51101 1.55688 1.66071 2.00673 2.12117 2.26314 2.91004 2.98935 3.16405 3.32437 3.47375 3.64668 3.68737 3.83606 3.84693 3.98389 4.13249 4.18741 4.20646 4.30742 4.33400 4.40238 4.49081 4.49560 4.59757 4.65278 4.68638 4.76417 4.77395 4.81360 4.90608 4.97642 4.99037 5.05363 5.08069 5.23117 5.23803 5.30375 5.32407 5.37627 5.40641 5.56603 6.18930 6.33478 6.59142 7.05294 7.06294 7.30370 8.74157 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.002331 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.465823 B =12007.348284 C =12657.032099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 H 0.107 0.893 4 C 0.516 3.484 5 O -0.572 6.572 6 N -0.705 5.705 7 C 0.172 3.828 8 C -0.149 4.149 9 C -0.115 4.115 10 C 0.084 3.916 11 N -0.615 5.615 12 C 0.541 3.459 13 O -0.573 6.573 14 C -0.114 4.114 15 S -0.159 6.159 16 C -0.542 4.542 17 H 0.086 0.914 18 C 0.011 3.989 19 N -0.913 5.913 20 Si 1.002 2.998 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.255 1.255 24 C 0.107 3.893 25 C -0.149 4.149 26 C -0.197 4.197 27 C -0.154 4.154 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.418 0.582 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.168 -4.444 -12.113 32.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 H 0.125 0.875 4 C 0.304 3.696 5 O -0.451 6.451 6 N -0.359 5.359 7 C 0.085 3.915 8 C -0.207 4.207 9 C -0.153 4.153 10 C -0.037 4.037 11 N -0.350 5.350 12 C 0.329 3.671 13 O -0.452 6.452 14 C -0.265 4.265 15 S 0.068 5.932 16 C -0.690 4.690 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.823 3.177 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.179 1.179 24 C -0.017 4.017 25 C -0.168 4.168 26 C -0.234 4.234 27 C -0.190 4.190 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.257 0.743 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.154 0.846 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.119 0.881 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -28.031 -6.010 -12.790 31.392 hybrid contribution 0.006 1.355 0.867 1.609 sum -28.025 -4.655 -11.923 30.810 Atomic orbital electron populations 1.21749 0.90071 1.02976 1.04356 1.20898 0.99203 0.99749 0.89774 0.87469 1.21088 0.78967 0.84048 0.85534 1.90690 1.38899 1.28249 1.87264 1.45897 1.53602 1.32378 1.04007 1.21151 0.89447 0.94561 0.86359 1.22024 1.02609 0.93179 1.02898 1.23185 0.99781 0.96770 0.95544 1.22798 0.81984 0.96861 1.02052 1.48466 1.05485 1.32185 1.48852 1.19967 0.81758 0.84634 0.80708 1.90697 1.41670 1.56761 1.56081 1.23268 1.02433 0.98806 1.01986 1.85727 1.02227 1.41281 1.63953 1.23177 0.96309 1.15881 1.33653 0.89596 1.26196 0.93898 1.01185 0.98099 1.70206 0.98394 1.42021 1.44349 0.84904 0.78383 0.76635 0.77740 1.19222 1.20439 1.17877 1.22301 0.97066 0.89089 0.93251 1.22003 1.04525 0.98982 0.91285 1.23078 0.93507 1.01924 1.04877 1.23050 0.96733 1.03517 0.95728 0.89922 0.89936 0.92649 0.74319 0.90841 0.92967 0.89488 0.84624 0.87707 0.88745 0.89293 0.87311 0.86993 0.92010 0.92653 0.94061 0.89087 0.88710 0.89733 0.88095 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 8.93 71.98 0.64 -0.25 16 2 C -0.08 -0.99 2.88 -11.54 -0.03 -1.03 16 3 H 0.11 1.21 7.90 -2.39 -0.02 1.19 16 4 C 0.52 9.97 6.37 87.66 0.56 10.52 16 5 O -0.57 -16.67 12.62 -3.03 -0.04 -16.71 16 6 N -0.70 -9.40 5.04 -417.53 -2.11 -11.51 16 7 C 0.17 2.83 0.81 4.79 0.00 2.83 16 8 C -0.15 -2.39 8.36 71.98 0.60 -1.79 16 9 C -0.12 -1.09 6.09 31.99 0.19 -0.90 16 10 C 0.08 1.38 6.67 86.85 0.58 1.96 16 11 N -0.62 -18.01 3.33 -811.81 -2.70 -20.71 16 12 C 0.54 22.19 7.87 87.66 0.69 22.88 16 13 O -0.57 -29.86 16.19 -3.04 -0.05 -29.91 16 14 C -0.11 -4.68 5.16 71.24 0.37 -4.32 16 15 S -0.16 -9.10 20.57 -56.49 -1.16 -10.26 16 16 C -0.54 -31.08 9.50 67.95 0.65 -30.44 16 17 H 0.09 4.51 7.80 -2.91 -0.02 4.48 16 18 C 0.01 0.61 5.49 84.86 0.47 1.08 16 19 N -0.91 -56.83 13.22 21.65 0.29 -56.55 16 20 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 C 0.11 3.04 5.78 86.73 0.50 3.55 16 25 C -0.15 -2.54 4.76 -10.79 -0.05 -2.59 16 26 C -0.20 -3.39 10.18 30.59 0.31 -3.07 16 27 C -0.15 -1.84 9.73 30.60 0.30 -1.54 16 28 H 0.08 0.19 7.56 -2.38 -0.02 0.17 16 29 H 0.08 0.36 7.29 -2.39 -0.02 0.35 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.42 2.40 7.90 -92.71 -0.73 1.67 16 32 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 33 H 0.05 1.19 6.27 -2.39 -0.01 1.17 16 34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.14 0.20 8.06 -2.39 -0.02 0.18 16 36 H 0.10 0.92 8.04 -2.39 -0.02 0.90 16 37 H 0.09 1.41 7.48 -2.38 -0.02 1.40 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 40 H 0.11 4.06 7.85 -2.40 -0.02 4.04 16 41 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 42 H 0.06 1.77 7.82 -2.39 -0.02 1.75 16 43 H 0.04 1.47 6.68 -2.39 -0.02 1.45 16 44 H 0.09 2.00 7.47 -2.39 -0.02 1.99 16 45 H 0.09 1.58 8.05 -2.38 -0.02 1.56 16 46 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.11 0.92 7.61 -2.39 -0.02 0.90 16 Total: -1.00 -88.33 399.50 2.26 -86.07 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.22 Total: 17.20 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 5.78 Total: -3.09 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -4.52 Total: -88.77 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -0.09 Total: -46.62 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.16 Total: -10.26 kcal Total: -88.33 2.26 -86.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689707108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.063 kcal (2) G-P(sol) polarization free energy of solvation -88.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds