Wall clock time and date at job start Sat Apr 11 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.53001 * 110.64372 * 56.85805 * 7 6 4 9 9 C 1.55165 * 110.71929 * 179.97438 * 7 6 4 10 10 C 1.54910 * 101.58177 * 82.85951 * 9 7 6 11 11 N 1.47424 * 104.83113 * 37.01151 * 10 9 7 12 12 C 1.34777 * 125.65170 * 155.90644 * 11 10 9 13 13 O 1.21271 * 120.00423 * 179.97438 * 12 11 10 14 14 C 1.50704 * 119.99563 * 359.97438 * 12 11 10 15 15 S 1.81000 * 109.46929 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99596 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00382 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99638 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47113 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47037 * 120.00269 * 20 18 16 23 23 H 1.48500 * 109.46924 * 239.99852 * 20 18 16 24 24 C 1.47028 * 108.70322 * 335.86863 * 11 10 9 25 25 C 1.53004 * 109.46899 * 119.99370 * 2 1 3 26 26 C 1.52995 * 117.49872 * 248.62421 * 25 2 1 27 27 C 1.52997 * 60.00071 * 252.50981 * 26 25 2 28 28 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 30 30 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 32 32 H 1.09004 * 109.47347 * 60.69799 * 8 7 6 33 33 H 1.09003 * 109.47075 * 180.70005 * 8 7 6 34 34 H 1.08997 * 109.46937 * 300.69570 * 8 7 6 35 35 H 1.08999 * 110.99937 * 200.93951 * 9 7 6 36 36 H 1.09001 * 110.99954 * 324.74593 * 9 7 6 37 37 H 1.08993 * 110.36392 * 155.84583 * 10 9 7 38 38 H 1.08998 * 110.36384 * 278.17440 * 10 9 7 39 39 H 1.09005 * 109.47034 * 300.00225 * 14 12 11 40 40 H 1.09000 * 109.46874 * 59.99765 * 14 12 11 41 41 H 0.96999 * 120.00096 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.88354 * 241.64068 * 24 11 10 43 43 H 1.09002 * 109.87960 * 120.47814 * 24 11 10 44 44 H 1.08999 * 115.55119 * 34.33524 * 25 2 1 45 45 H 1.09000 * 117.49954 * 359.97438 * 26 25 2 46 46 H 1.09003 * 117.49893 * 145.02331 * 26 25 2 47 47 H 1.09000 * 117.50318 * 252.50923 * 27 26 25 48 48 H 1.09007 * 117.51983 * 107.48049 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.7753 -2.4025 -3.6447 9 6 1.7080 -0.2224 -4.9368 10 6 2.7464 0.9178 -5.0822 11 7 4.0243 0.3216 -4.6522 12 6 5.2508 0.7441 -5.0179 13 8 6.2374 0.1757 -4.6007 14 6 5.3960 1.9232 -5.9453 15 16 7.1523 2.2417 -6.2456 16 6 7.0312 3.6280 -7.3265 17 1 6.0613 4.0151 -7.6017 18 6 8.1825 4.2224 -7.8243 19 7 9.3646 3.7502 -7.4893 20 14 8.0542 5.6925 -8.9697 21 1 6.6238 6.0254 -9.1895 22 1 8.7460 6.8566 -8.3602 23 1 8.6910 5.3636 -10.2703 24 6 3.7393 -0.8099 -3.7577 25 6 2.0399 -0.7211 1.2494 26 6 2.7417 0.1228 2.3152 27 6 3.5549 -0.8280 1.4345 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.1537 0.5418 -2.5435 32 1 0.6870 -2.4628 -3.6394 33 1 2.1624 -2.8978 -4.5352 34 1 2.1707 -2.8931 -2.7553 35 1 1.7435 -0.8950 -5.7938 36 1 0.7037 0.1782 -4.7984 37 1 2.8099 1.2429 -6.1206 38 1 2.4826 1.7557 -4.4369 39 1 4.8998 1.7049 -6.8910 40 1 4.9395 2.8020 -5.4898 41 1 10.1692 4.1659 -7.8368 42 1 4.1655 -0.6201 -2.7726 43 1 4.1572 -1.7263 -4.1744 44 1 1.4310 -1.5584 1.5904 45 1 2.8405 1.1918 2.1261 46 1 2.5945 -0.1590 3.3578 47 1 3.9427 -1.7353 1.8976 48 1 4.1884 -0.3848 0.6660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689707109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:03 Heat of formation + Delta-G solvation = -48.904303 kcal Electronic energy + Delta-G solvation = -27690.822796 eV Core-core repulsion = 23872.659664 eV Total energy + Delta-G solvation = -3818.163132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96087 -39.49219 -37.91090 -36.84559 -34.40614 -33.05897 -32.43369 -31.07506 -29.84061 -29.38605 -26.15006 -25.42462 -25.17398 -23.39378 -22.55823 -22.31778 -20.26291 -19.91846 -19.29326 -17.80142 -17.30828 -16.74877 -16.50004 -15.88737 -15.64887 -15.01391 -14.97784 -14.81137 -14.55732 -14.26428 -14.06067 -13.85613 -13.72468 -13.11070 -13.00295 -12.85919 -12.71094 -12.58560 -12.45908 -12.30879 -12.10908 -11.79187 -11.77234 -11.66660 -11.53828 -11.39402 -11.11317 -11.07723 -11.01635 -10.76753 -10.60818 -10.30616 -9.81836 -9.65437 -9.47970 -9.26843 -9.07902 -8.49232 -8.22531 -6.50501 -6.22003 -3.92672 2.44200 2.74973 2.92675 3.08639 3.20876 3.25578 3.30492 3.61016 3.66087 4.02415 4.19670 4.20621 4.29489 4.42912 4.55319 4.58340 4.80158 4.89092 4.92335 4.97535 5.03659 5.07724 5.13076 5.13253 5.31535 5.32372 5.38421 5.44779 5.45827 5.51671 5.54898 5.60653 5.63956 5.65265 5.69572 5.78985 5.88843 5.91202 5.93927 6.02629 6.04800 6.11885 6.31538 6.42938 7.24804 7.59083 7.67442 8.03141 8.34853 8.57858 9.23133 10.85499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.002383 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.573843 B =11749.266318 C =12341.841171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.097 0.903 4 C 0.519 3.481 5 O -0.520 6.520 6 N -0.721 5.721 7 C 0.164 3.836 8 C -0.155 4.155 9 C -0.134 4.134 10 C 0.100 3.900 11 N -0.626 5.626 12 C 0.547 3.453 13 O -0.513 6.513 14 C -0.145 4.145 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.110 3.890 25 C -0.136 4.136 26 C -0.184 4.184 27 C -0.155 4.155 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.399 0.601 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.499 -7.723 13.533 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.115 0.885 4 C 0.305 3.695 5 O -0.395 6.395 6 N -0.374 5.374 7 C 0.078 3.922 8 C -0.214 4.214 9 C -0.172 4.172 10 C -0.024 4.024 11 N -0.364 5.364 12 C 0.335 3.665 13 O -0.387 6.387 14 C -0.296 4.296 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.014 4.014 25 C -0.155 4.155 26 C -0.221 4.221 27 C -0.192 4.192 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.217 -9.250 14.188 27.937 hybrid contribution -1.512 2.118 -1.305 2.912 sum -23.729 -7.132 12.883 27.927 Atomic orbital electron populations 1.21730 0.92526 1.02770 1.02657 1.20922 0.97445 1.00086 0.91869 0.88531 1.20605 0.79930 0.84726 0.84210 1.90694 1.36570 1.25737 1.86500 1.46064 1.54200 1.32058 1.05060 1.21238 0.93006 0.93451 0.84532 1.22093 1.01338 0.93664 1.04257 1.23145 0.98970 0.97983 0.97130 1.22294 0.83269 0.95701 1.01131 1.48516 1.05478 1.32975 1.49438 1.20041 0.80947 0.84611 0.80894 1.90719 1.36396 1.56917 1.54625 1.23502 1.08225 0.97575 1.00291 1.85451 0.95343 1.40623 1.62006 1.22890 0.95492 1.16782 1.33073 0.90911 1.25002 0.94493 0.97666 0.96481 1.70029 0.97464 1.40060 1.42675 0.86112 0.78294 0.81159 0.79886 1.19633 1.20561 1.20557 1.22207 0.93806 0.90266 0.95100 1.21911 0.96349 1.01516 0.95709 1.23094 1.05136 0.97634 0.96224 1.22798 0.93270 1.01099 1.01990 0.91981 0.91238 0.92129 0.76622 0.92221 0.91390 0.89678 0.88685 0.89236 0.89880 0.91519 0.89323 0.89417 0.92220 0.90839 0.90728 0.87603 0.88884 0.88797 0.88792 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.07 37.16 0.34 -0.34 16 2 C -0.08 -0.59 2.88 -91.77 -0.26 -0.86 16 3 H 0.10 0.65 7.90 -51.92 -0.41 0.24 16 4 C 0.52 5.03 6.24 -10.98 -0.07 4.97 16 5 O -0.52 -6.88 12.08 5.55 0.07 -6.82 16 6 N -0.72 -5.66 5.04 -45.91 -0.23 -5.89 16 7 C 0.16 1.51 0.81 -129.98 -0.10 1.41 16 8 C -0.16 -1.37 8.38 37.16 0.31 -1.06 16 9 C -0.13 -0.95 6.07 -24.58 -0.15 -1.10 16 10 C 0.10 0.99 6.67 -2.53 -0.02 0.98 16 11 N -0.63 -9.31 3.33 -170.52 -0.57 -9.88 16 12 C 0.55 10.94 7.87 -10.98 -0.09 10.86 16 13 O -0.51 -12.50 16.19 5.56 0.09 -12.41 16 14 C -0.15 -3.02 5.16 36.01 0.19 -2.83 16 15 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 16 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 20 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.11 1.51 5.83 -3.06 -0.02 1.49 16 25 C -0.14 -1.13 4.72 -90.62 -0.43 -1.56 16 26 C -0.18 -1.41 10.18 -26.74 -0.27 -1.68 16 27 C -0.15 -1.53 8.97 -26.73 -0.24 -1.77 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.21 7.57 -51.93 -0.39 -0.18 16 31 H 0.40 2.07 7.92 -40.82 -0.32 1.75 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.08 0.95 6.03 -51.93 -0.31 0.64 16 35 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 36 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.69 7.85 -51.91 -0.41 1.28 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.07 1.19 6.90 -51.93 -0.36 0.84 16 43 H 0.07 1.10 7.81 -51.93 -0.41 0.70 16 44 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 45 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -36.48 400.21 -9.75 -46.23 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.02 Total: 0.31 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -0.62 Total: -4.47 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.06 Total: -41.34 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.16 Total: -19.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.48 -9.75 -46.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689707109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.678 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds