Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.53001 * 110.64372 * 56.85805 * 7 6 4 9 9 C 1.55165 * 110.71929 * 179.97438 * 7 6 4 10 10 C 1.54910 * 101.58177 * 82.85951 * 9 7 6 11 11 N 1.47424 * 104.83113 * 37.01151 * 10 9 7 12 12 C 1.34777 * 125.65170 * 155.90644 * 11 10 9 13 13 O 1.21271 * 120.00423 * 179.97438 * 12 11 10 14 14 C 1.50704 * 119.99563 * 359.97438 * 12 11 10 15 15 S 1.81000 * 109.46929 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99596 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00382 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99638 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47113 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47037 * 120.00269 * 20 18 16 23 23 H 1.48500 * 109.46924 * 239.99852 * 20 18 16 24 24 C 1.47028 * 108.70322 * 335.86863 * 11 10 9 25 25 C 1.53004 * 109.46899 * 119.99370 * 2 1 3 26 26 C 1.52995 * 117.49872 * 248.62421 * 25 2 1 27 27 C 1.52997 * 60.00071 * 252.50981 * 26 25 2 28 28 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 30 30 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 31 31 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 32 32 H 1.09004 * 109.47347 * 60.69799 * 8 7 6 33 33 H 1.09003 * 109.47075 * 180.70005 * 8 7 6 34 34 H 1.08997 * 109.46937 * 300.69570 * 8 7 6 35 35 H 1.08999 * 110.99937 * 200.93951 * 9 7 6 36 36 H 1.09001 * 110.99954 * 324.74593 * 9 7 6 37 37 H 1.08993 * 110.36392 * 155.84583 * 10 9 7 38 38 H 1.08998 * 110.36384 * 278.17440 * 10 9 7 39 39 H 1.09005 * 109.47034 * 300.00225 * 14 12 11 40 40 H 1.09000 * 109.46874 * 59.99765 * 14 12 11 41 41 H 0.96999 * 120.00096 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.88354 * 241.64068 * 24 11 10 43 43 H 1.09002 * 109.87960 * 120.47814 * 24 11 10 44 44 H 1.08999 * 115.55119 * 34.33524 * 25 2 1 45 45 H 1.09000 * 117.49954 * 359.97438 * 26 25 2 46 46 H 1.09003 * 117.49893 * 145.02331 * 26 25 2 47 47 H 1.09000 * 117.50318 * 252.50923 * 27 26 25 48 48 H 1.09007 * 117.51983 * 107.48049 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.7753 -2.4025 -3.6447 9 6 1.7080 -0.2224 -4.9368 10 6 2.7464 0.9178 -5.0822 11 7 4.0243 0.3216 -4.6522 12 6 5.2508 0.7441 -5.0179 13 8 6.2374 0.1757 -4.6007 14 6 5.3960 1.9232 -5.9453 15 16 7.1523 2.2417 -6.2456 16 6 7.0312 3.6280 -7.3265 17 1 6.0613 4.0151 -7.6017 18 6 8.1825 4.2224 -7.8243 19 7 9.3646 3.7502 -7.4893 20 14 8.0542 5.6925 -8.9697 21 1 6.6238 6.0254 -9.1895 22 1 8.7460 6.8566 -8.3602 23 1 8.6910 5.3636 -10.2703 24 6 3.7393 -0.8099 -3.7577 25 6 2.0399 -0.7211 1.2494 26 6 2.7417 0.1228 2.3152 27 6 3.5549 -0.8280 1.4345 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.1537 0.5418 -2.5435 32 1 0.6870 -2.4628 -3.6394 33 1 2.1624 -2.8978 -4.5352 34 1 2.1707 -2.8931 -2.7553 35 1 1.7435 -0.8950 -5.7938 36 1 0.7037 0.1782 -4.7984 37 1 2.8099 1.2429 -6.1206 38 1 2.4826 1.7557 -4.4369 39 1 4.8998 1.7049 -6.8910 40 1 4.9395 2.8020 -5.4898 41 1 10.1692 4.1659 -7.8368 42 1 4.1655 -0.6201 -2.7726 43 1 4.1572 -1.7263 -4.1744 44 1 1.4310 -1.5584 1.5904 45 1 2.8405 1.1918 2.1261 46 1 2.5945 -0.1590 3.3578 47 1 3.9427 -1.7353 1.8976 48 1 4.1884 -0.3848 0.6660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689707109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -73.933943 kcal Electronic energy + Delta-G solvation = -27691.908163 eV Core-core repulsion = 23872.659664 eV Total energy + Delta-G solvation = -3819.248498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.84452 -40.63260 -39.01455 -37.72786 -35.40603 -34.59829 -33.79920 -31.94741 -30.95499 -30.56167 -27.79266 -27.05873 -25.71847 -24.33922 -23.30205 -23.01085 -21.02108 -20.96542 -20.43343 -19.62807 -18.24588 -17.87773 -17.71735 -16.90139 -16.85928 -16.61410 -16.21453 -15.87665 -15.73177 -15.44666 -15.12488 -14.88991 -14.67305 -14.46937 -14.25592 -13.74829 -13.62074 -13.46739 -13.30468 -13.19324 -13.16864 -13.12578 -12.91859 -12.66949 -12.61823 -12.46165 -12.37243 -12.34356 -11.99726 -11.85705 -11.72583 -11.30727 -11.16988 -11.04943 -10.98284 -10.41858 -10.29190 -10.13732 -9.76568 -8.70816 -8.35653 -6.15213 1.21345 1.41705 1.43827 1.50934 1.56547 1.70057 2.00667 2.11832 2.25949 2.97120 2.98724 3.16899 3.33112 3.47514 3.59958 3.80333 3.84573 3.85238 3.93426 4.16876 4.18809 4.20330 4.28601 4.31943 4.37668 4.40208 4.54465 4.60255 4.65444 4.69149 4.77496 4.78950 4.82226 4.91923 4.98574 5.03632 5.05476 5.07813 5.22818 5.23050 5.24139 5.32212 5.39187 5.40830 5.58516 6.19013 6.33253 6.62232 7.05130 7.06104 7.34350 8.74079 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.002383 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.573843 B =11749.266318 C =12341.841171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.105 0.895 4 C 0.512 3.488 5 O -0.563 6.563 6 N -0.708 5.708 7 C 0.173 3.827 8 C -0.150 4.150 9 C -0.116 4.116 10 C 0.085 3.915 11 N -0.615 5.615 12 C 0.541 3.459 13 O -0.573 6.573 14 C -0.114 4.114 15 S -0.159 6.159 16 C -0.542 4.542 17 H 0.086 0.914 18 C 0.011 3.989 19 N -0.913 5.913 20 Si 1.002 2.998 21 H -0.253 1.253 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.108 3.892 25 C -0.134 4.134 26 C -0.164 4.164 27 C -0.183 4.183 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.417 0.583 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.108 0.892 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.086 0.914 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.203 -5.677 12.653 32.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 H 0.123 0.877 4 C 0.300 3.700 5 O -0.441 6.441 6 N -0.362 5.362 7 C 0.086 3.914 8 C -0.208 4.208 9 C -0.154 4.154 10 C -0.037 4.037 11 N -0.350 5.350 12 C 0.330 3.670 13 O -0.452 6.452 14 C -0.265 4.265 15 S 0.068 5.932 16 C -0.689 4.689 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.824 3.176 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.016 4.016 25 C -0.152 4.152 26 C -0.201 4.201 27 C -0.221 4.221 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.255 0.745 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.105 0.895 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.023 -7.180 13.307 30.966 hybrid contribution -0.099 1.381 -0.943 1.676 sum -27.122 -5.799 12.364 30.366 Atomic orbital electron populations 1.21729 0.90010 1.02989 1.04334 1.20970 0.99364 0.99733 0.89883 0.87656 1.21142 0.79194 0.84275 0.85390 1.90695 1.38397 1.27811 1.87150 1.45930 1.53755 1.32375 1.04098 1.21127 0.89436 0.94507 0.86326 1.22034 1.02765 0.92950 1.03065 1.23190 1.00001 0.96582 0.95623 1.22792 0.81268 0.97392 1.02208 1.48464 1.05671 1.32711 1.48125 1.19960 0.81955 0.84336 0.80796 1.90694 1.38879 1.58688 1.56909 1.23272 1.02695 0.98768 1.01795 1.85724 1.02876 1.41723 1.62841 1.23209 0.96290 1.16534 1.32900 0.89617 1.26193 0.93870 1.01091 0.98224 1.70205 0.98514 1.41990 1.44277 0.84855 0.79233 0.76463 0.77067 1.17670 1.19988 1.19985 1.22294 0.97524 0.88923 0.92850 1.22040 0.94718 1.01883 0.96583 1.23158 1.02723 0.97558 0.96616 1.22688 0.94536 1.01927 1.02916 0.92473 0.90023 0.90024 0.74493 0.89614 0.91104 0.92500 0.87813 0.84726 0.88772 0.89288 0.87031 0.87310 0.92003 0.94147 0.92674 0.87347 0.88071 0.87352 0.89533 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 9.07 71.98 0.65 -0.20 16 2 C -0.08 -1.01 2.88 -11.54 -0.03 -1.04 16 3 H 0.11 1.19 7.90 -2.38 -0.02 1.17 16 4 C 0.51 9.59 6.24 87.66 0.55 10.13 16 5 O -0.56 -15.63 12.08 -3.04 -0.04 -15.67 16 6 N -0.71 -9.38 5.04 -417.56 -2.10 -11.49 16 7 C 0.17 2.84 0.81 4.79 0.00 2.84 16 8 C -0.15 -2.42 8.38 71.98 0.60 -1.82 16 9 C -0.12 -1.12 6.07 31.99 0.19 -0.93 16 10 C 0.08 1.38 6.67 86.86 0.58 1.96 16 11 N -0.61 -17.89 3.33 -811.80 -2.70 -20.59 16 12 C 0.54 22.10 7.87 87.66 0.69 22.79 16 13 O -0.57 -29.70 16.19 -3.00 -0.05 -29.74 16 14 C -0.11 -4.69 5.16 71.24 0.37 -4.32 16 15 S -0.16 -9.07 20.57 -56.49 -1.16 -10.23 16 16 C -0.54 -31.00 9.50 67.96 0.65 -30.36 16 17 H 0.09 4.51 7.80 -2.91 -0.02 4.48 16 18 C 0.01 0.61 5.49 84.86 0.47 1.08 16 19 N -0.91 -56.77 13.22 21.65 0.29 -56.48 16 20 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 21 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.11 3.04 5.83 86.73 0.51 3.55 16 25 C -0.13 -2.15 4.72 -10.79 -0.05 -2.20 16 26 C -0.16 -2.37 10.18 30.59 0.31 -2.05 16 27 C -0.18 -3.91 8.97 30.59 0.27 -3.63 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.19 7.57 -2.38 -0.02 0.17 16 31 H 0.42 2.52 7.92 -92.71 -0.73 1.79 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.06 1.29 6.03 -2.39 -0.01 1.28 16 35 H 0.10 0.94 8.05 -2.39 -0.02 0.92 16 36 H 0.13 0.24 8.07 -2.39 -0.02 0.22 16 37 H 0.09 1.42 7.48 -2.39 -0.02 1.40 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 4.05 7.85 -2.39 -0.02 4.03 16 40 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.04 1.41 6.90 -2.39 -0.02 1.39 16 43 H 0.05 1.75 7.81 -2.39 -0.02 1.73 16 44 H 0.11 1.67 8.11 -2.39 -0.02 1.65 16 45 H 0.10 1.30 8.05 -2.39 -0.02 1.28 16 46 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 Total: -1.00 -87.23 400.21 2.24 -84.99 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.22 Total: 17.93 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.76 Total: -4.20 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -4.52 Total: -88.56 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.09 Total: -45.41 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.23 kcal Total: -87.23 2.24 -84.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689707109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.057 kcal (2) G-P(sol) polarization free energy of solvation -87.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds