Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46680 * 2 1 4 4 N 1.46497 * 109.47138 * 120.00339 * 2 1 3 5 5 C 1.36941 * 119.99912 * 274.99834 * 4 2 1 6 6 H 1.08001 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99882 * 179.72826 * 5 4 2 8 8 N 1.31619 * 120.00021 * 0.27123 * 7 5 4 9 9 Si 1.86800 * 119.99934 * 180.27666 * 7 5 4 10 10 H 1.48499 * 109.47224 * 89.99529 * 9 7 5 11 11 H 1.48502 * 109.47380 * 209.99722 * 9 7 5 12 12 H 1.48502 * 109.46900 * 329.99688 * 9 7 5 13 13 C 1.52997 * 109.46948 * 240.00416 * 2 1 3 14 14 H 1.09001 * 109.58930 * 53.79614 * 13 2 1 15 15 C 1.53198 * 109.58691 * 293.36791 * 13 2 1 16 16 C 1.53037 * 109.31383 * 185.57598 * 15 13 2 17 17 C 1.53042 * 109.53457 * 61.36777 * 16 15 13 18 18 C 1.53189 * 109.31227 * 298.63159 * 17 16 15 19 19 N 1.46923 * 109.58520 * 174.08067 * 13 2 1 20 20 C 1.34768 * 120.63248 * 353.41433 * 19 13 2 21 21 O 1.21280 * 120.00334 * 5.06910 * 20 19 13 22 22 C 1.50708 * 120.00282 * 185.06372 * 20 19 13 23 23 C 1.52996 * 109.47202 * 179.97438 * 22 20 19 24 24 F 1.39898 * 109.47734 * 300.00653 * 23 22 20 25 25 F 1.39903 * 109.46690 * 60.00666 * 23 22 20 26 26 C 1.53001 * 109.47275 * 180.02562 * 23 22 20 27 27 F 1.39897 * 109.46955 * 60.00277 * 26 23 22 28 28 F 1.39895 * 109.47489 * 180.02562 * 26 23 22 29 29 H 1.09001 * 109.46833 * 305.68209 * 1 2 3 30 30 H 1.08996 * 109.46999 * 65.68348 * 1 2 3 31 31 H 1.08999 * 109.46824 * 185.68259 * 1 2 3 32 32 H 0.96992 * 119.99888 * 94.99951 * 4 2 1 33 33 H 0.97000 * 119.99741 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.49869 * 305.53613 * 15 13 2 35 35 H 1.08999 * 109.49514 * 65.62706 * 15 13 2 36 36 H 1.08997 * 109.46371 * 301.34442 * 16 15 13 37 37 H 1.09001 * 109.46263 * 181.38583 * 16 15 13 38 38 H 1.09004 * 109.50057 * 178.67945 * 17 16 15 39 39 H 1.09003 * 109.50055 * 58.58743 * 17 16 15 40 40 H 1.08999 * 109.58958 * 294.84687 * 18 17 16 41 41 H 1.09001 * 109.70151 * 174.49248 * 18 17 16 42 42 H 1.09001 * 109.47193 * 300.00312 * 22 20 19 43 43 H 1.08999 * 109.46255 * 60.00045 * 22 20 19 44 44 H 1.09001 * 109.47014 * 300.00434 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4243 7 6 2.6065 -0.6633 3.5104 8 7 2.9195 -1.9404 3.4513 9 14 2.7776 0.2666 5.1214 10 1 1.5063 0.1748 5.8834 11 1 3.8784 -0.3277 5.9217 12 1 3.0842 1.6921 4.8399 13 6 2.0400 -0.7212 -1.2493 14 1 1.5899 -0.2768 -2.1371 15 6 1.6714 -2.2061 -1.1715 16 6 2.3027 -2.9468 -2.3526 17 6 3.8263 -2.8229 -2.2790 18 6 4.2193 -1.3450 -2.3694 19 7 3.5023 -0.6002 -1.3254 20 6 4.1732 0.1786 -0.4538 21 8 3.5823 0.7149 0.4595 22 6 5.6577 0.3832 -0.6141 23 6 6.1687 1.3025 0.4970 24 9 5.5164 2.5376 0.4175 25 9 5.9102 0.7179 1.7415 26 6 7.6756 1.5107 0.3340 27 9 7.9336 2.0954 -0.9105 28 9 8.1430 2.3508 1.3503 29 1 -0.3633 0.5994 0.8348 30 1 -0.3633 0.4232 -0.9365 31 1 -0.3633 -1.0226 0.1018 32 1 2.2491 -1.6317 1.1525 33 1 3.2387 -2.3987 4.2443 34 1 2.0452 -2.6253 -0.2373 35 1 0.5876 -2.3145 -1.2115 36 1 1.9475 -2.5110 -3.2863 37 1 2.0217 -3.9993 -2.3133 38 1 4.2763 -3.3703 -3.1073 39 1 4.1799 -3.2363 -1.3345 40 1 3.9471 -0.9537 -3.3497 41 1 5.2940 -1.2407 -2.2199 42 1 6.1658 -0.5791 -0.5524 43 1 5.8589 0.8389 -1.5835 44 1 8.1841 0.5486 0.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689909440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = -181.165858 kcal Electronic energy + Delta-G solvation = -33453.312138 eV Core-core repulsion = 28521.343798 eV Total energy + Delta-G solvation = -4931.968340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.72998 -48.37264 -47.41548 -46.70367 -40.18326 -36.99037 -35.33910 -32.81892 -32.27711 -31.92728 -29.64020 -28.02236 -27.76045 -24.79352 -23.89289 -23.19461 -22.26384 -20.78149 -19.98095 -18.79977 -18.36275 -17.94190 -17.57052 -16.89970 -16.59119 -16.15718 -16.01455 -15.28336 -15.00692 -14.54053 -14.35014 -14.19081 -14.14755 -13.92562 -13.73980 -13.67304 -13.50834 -13.22692 -13.12108 -13.04383 -12.87261 -12.73649 -12.36086 -12.19310 -12.03340 -11.92477 -11.69824 -11.38882 -11.12939 -10.85648 -10.71659 -10.64123 -10.60976 -10.48087 -10.39846 -10.03749 -9.71609 -9.30279 -8.65754 -8.32777 -7.94615 -6.52843 -5.44224 -2.65365 2.65728 3.19465 3.33105 3.62839 3.64898 3.68048 3.72582 3.77095 3.94578 4.08102 4.66154 4.71699 4.82411 4.88621 4.92389 5.00939 5.11753 5.23261 5.33117 5.42581 5.46803 5.50822 5.65762 5.77155 5.83236 5.91363 6.00452 6.06942 6.16042 6.24987 6.28899 6.44815 6.52100 6.60341 6.86805 7.01794 7.08473 7.39707 7.87558 8.07160 8.73420 8.87328 9.87016 10.41963 10.78382 11.80350 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.006876 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.264106 B = 4070.861631 C = 6304.255533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.169 3.831 3 H 0.080 0.920 4 N -0.701 5.701 5 C -0.172 4.172 6 H 0.063 0.937 7 C -0.026 4.026 8 N -0.948 5.948 9 Si 0.894 3.106 10 H -0.298 1.298 11 H -0.297 1.297 12 H -0.285 1.285 13 C 0.148 3.852 14 H 0.062 0.938 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.111 3.889 19 N -0.610 5.610 20 C 0.493 3.507 21 O -0.424 6.424 22 C -0.190 4.190 23 C 0.273 3.727 24 F -0.173 7.173 25 F -0.152 7.152 26 C 0.232 3.768 27 F -0.186 7.186 28 F -0.184 7.184 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.378 0.622 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.741 0.117 -16.886 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.059 3.941 3 H 0.098 0.902 4 N -0.343 5.343 5 C -0.304 4.304 6 H 0.081 0.919 7 C -0.219 4.219 8 N -0.601 5.601 9 Si 0.727 3.273 10 H -0.226 1.226 11 H -0.224 1.224 12 H -0.211 1.211 13 C 0.045 3.955 14 H 0.080 0.920 15 C -0.172 4.172 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.012 4.012 19 N -0.347 5.347 20 C 0.276 3.724 21 O -0.292 6.292 22 C -0.231 4.231 23 C 0.235 3.765 24 F -0.154 7.154 25 F -0.132 7.132 26 C 0.177 3.823 27 F -0.167 7.167 28 F -0.165 7.165 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.213 0.787 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.431 0.653 -16.168 17.806 hybrid contribution 0.354 0.105 0.962 1.030 sum 7.785 0.758 -15.207 17.100 Atomic orbital electron populations 1.22581 1.00151 1.00887 0.99339 1.20691 0.90280 0.97713 0.85428 0.90232 1.42396 1.77260 1.09574 1.05091 1.19035 1.32111 0.93045 0.86216 0.91886 1.24484 1.04045 0.95930 0.97449 1.69630 1.53985 1.08533 1.27921 0.86325 0.76768 0.79135 0.85031 1.22627 1.22373 1.21092 1.21608 0.78564 0.95891 0.99437 0.91973 1.21993 1.00628 0.95343 0.99224 1.21494 0.94941 1.00364 0.98601 1.21914 0.96995 0.95959 1.02536 1.21613 0.96461 0.91934 0.91219 1.47745 1.07081 1.47465 1.32453 1.19666 0.87411 0.82311 0.83006 1.91133 1.66128 1.45007 1.26892 1.22844 0.99286 1.01695 0.99270 1.21456 0.89542 0.80929 0.84617 1.93107 1.82683 1.43237 1.96337 1.93260 1.94351 1.83443 1.42162 1.22939 0.94113 0.92532 0.72670 1.93028 1.94769 1.86729 1.42153 1.93067 1.89536 1.74310 1.59547 0.92882 0.94979 0.93581 0.78686 0.94429 0.90045 0.91104 0.92437 0.92113 0.91425 0.91089 0.91989 0.90634 0.86274 0.86246 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.15 37.16 0.34 -2.78 16 2 C 0.17 3.42 1.88 -67.93 -0.13 3.30 16 3 H 0.08 1.81 5.91 -52.17 -0.31 1.50 16 4 N -0.70 -17.44 3.61 -53.43 -0.19 -17.63 16 5 C -0.17 -4.96 7.98 -15.06 -0.12 -5.08 16 6 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 8 N -0.95 -29.50 13.06 55.49 0.72 -28.78 16 9 Si 0.89 24.45 29.55 -169.99 -5.02 19.43 16 10 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 11 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 12 H -0.28 -7.81 7.11 56.52 0.40 -7.41 16 13 C 0.15 2.36 2.72 -67.60 -0.18 2.18 16 14 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.13 -1.99 4.87 -26.61 -0.13 -2.12 16 16 C -0.12 -1.32 5.88 -26.69 -0.16 -1.48 16 17 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 18 C 0.11 1.16 6.33 -3.71 -0.02 1.14 16 19 N -0.61 -9.09 2.97 -165.22 -0.49 -9.58 16 20 C 0.49 8.64 7.15 -10.99 -0.08 8.56 16 21 O -0.42 -9.61 7.57 5.56 0.04 -9.56 16 22 C -0.19 -2.45 3.58 -27.88 -0.10 -2.55 16 23 C 0.27 4.28 1.40 -26.73 -0.04 4.24 16 24 F -0.17 -3.21 16.10 2.25 0.04 -3.17 16 25 F -0.15 -3.12 16.12 2.25 0.04 -3.08 16 26 C 0.23 2.72 4.83 37.16 0.18 2.90 16 27 F -0.19 -2.08 16.80 2.25 0.04 -2.04 16 28 F -0.18 -2.63 17.30 2.25 0.04 -2.59 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.84 7.04 -51.93 -0.37 0.48 16 32 H 0.38 9.95 5.61 -40.82 -0.23 9.72 16 33 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.08 1.52 6.03 -51.93 -0.31 1.20 16 35 H 0.07 1.02 7.04 -51.93 -0.37 0.66 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.63 5.96 -51.93 -0.31 0.32 16 42 H 0.12 1.20 7.48 -51.93 -0.39 0.81 16 43 H 0.12 1.15 7.77 -51.93 -0.40 0.75 16 44 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -35.55 354.01 -6.19 -41.74 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.03 Total: 4.13 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.70 Total: 5.82 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.04 Total: -55.99 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.04 Total: -9.56 kcal Atomic # 9 Polarization: -11.05 SS G_CDS: 0.15 Total: -10.90 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.02 Total: 19.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.55 -6.19 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689909440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.431 kcal (2) G-P(sol) polarization free energy of solvation -35.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds