Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46680 * 2 1 4 4 N 1.46497 * 109.47138 * 120.00339 * 2 1 3 5 5 C 1.36941 * 119.99912 * 274.99834 * 4 2 1 6 6 H 1.08001 * 119.99837 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99882 * 179.72826 * 5 4 2 8 8 N 1.31619 * 120.00021 * 0.27123 * 7 5 4 9 9 Si 1.86800 * 119.99934 * 180.27666 * 7 5 4 10 10 H 1.48499 * 109.47224 * 89.99529 * 9 7 5 11 11 H 1.48502 * 109.47380 * 209.99722 * 9 7 5 12 12 H 1.48502 * 109.46900 * 329.99688 * 9 7 5 13 13 C 1.52997 * 109.46948 * 240.00416 * 2 1 3 14 14 H 1.09001 * 109.58930 * 53.79614 * 13 2 1 15 15 C 1.53198 * 109.58691 * 293.36791 * 13 2 1 16 16 C 1.53037 * 109.31383 * 185.57598 * 15 13 2 17 17 C 1.53042 * 109.53457 * 61.36777 * 16 15 13 18 18 C 1.53189 * 109.31227 * 298.63159 * 17 16 15 19 19 N 1.46923 * 109.58520 * 174.08067 * 13 2 1 20 20 C 1.34768 * 120.63248 * 353.41433 * 19 13 2 21 21 O 1.21280 * 120.00334 * 5.06910 * 20 19 13 22 22 C 1.50708 * 120.00282 * 185.06372 * 20 19 13 23 23 C 1.52996 * 109.47202 * 179.97438 * 22 20 19 24 24 F 1.39898 * 109.47734 * 300.00653 * 23 22 20 25 25 F 1.39903 * 109.46690 * 60.00666 * 23 22 20 26 26 C 1.53001 * 109.47275 * 180.02562 * 23 22 20 27 27 F 1.39897 * 109.46955 * 60.00277 * 26 23 22 28 28 F 1.39895 * 109.47489 * 180.02562 * 26 23 22 29 29 H 1.09001 * 109.46833 * 305.68209 * 1 2 3 30 30 H 1.08996 * 109.46999 * 65.68348 * 1 2 3 31 31 H 1.08999 * 109.46824 * 185.68259 * 1 2 3 32 32 H 0.96992 * 119.99888 * 94.99951 * 4 2 1 33 33 H 0.97000 * 119.99741 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.49869 * 305.53613 * 15 13 2 35 35 H 1.08999 * 109.49514 * 65.62706 * 15 13 2 36 36 H 1.08997 * 109.46371 * 301.34442 * 16 15 13 37 37 H 1.09001 * 109.46263 * 181.38583 * 16 15 13 38 38 H 1.09004 * 109.50057 * 178.67945 * 17 16 15 39 39 H 1.09003 * 109.50055 * 58.58743 * 17 16 15 40 40 H 1.08999 * 109.58958 * 294.84687 * 18 17 16 41 41 H 1.09001 * 109.70151 * 174.49248 * 18 17 16 42 42 H 1.09001 * 109.47193 * 300.00312 * 22 20 19 43 43 H 1.08999 * 109.46255 * 60.00045 * 22 20 19 44 44 H 1.09001 * 109.47014 * 300.00434 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0402 2.4243 7 6 2.6065 -0.6633 3.5104 8 7 2.9195 -1.9404 3.4513 9 14 2.7776 0.2666 5.1214 10 1 1.5063 0.1748 5.8834 11 1 3.8784 -0.3277 5.9217 12 1 3.0842 1.6921 4.8399 13 6 2.0400 -0.7212 -1.2493 14 1 1.5899 -0.2768 -2.1371 15 6 1.6714 -2.2061 -1.1715 16 6 2.3027 -2.9468 -2.3526 17 6 3.8263 -2.8229 -2.2790 18 6 4.2193 -1.3450 -2.3694 19 7 3.5023 -0.6002 -1.3254 20 6 4.1732 0.1786 -0.4538 21 8 3.5823 0.7149 0.4595 22 6 5.6577 0.3832 -0.6141 23 6 6.1687 1.3025 0.4970 24 9 5.5164 2.5376 0.4175 25 9 5.9102 0.7179 1.7415 26 6 7.6756 1.5107 0.3340 27 9 7.9336 2.0954 -0.9105 28 9 8.1430 2.3508 1.3503 29 1 -0.3633 0.5994 0.8348 30 1 -0.3633 0.4232 -0.9365 31 1 -0.3633 -1.0226 0.1018 32 1 2.2491 -1.6317 1.1525 33 1 3.2387 -2.3987 4.2443 34 1 2.0452 -2.6253 -0.2373 35 1 0.5876 -2.3145 -1.2115 36 1 1.9475 -2.5110 -3.2863 37 1 2.0217 -3.9993 -2.3133 38 1 4.2763 -3.3703 -3.1073 39 1 4.1799 -3.2363 -1.3345 40 1 3.9471 -0.9537 -3.3497 41 1 5.2940 -1.2407 -2.2199 42 1 6.1658 -0.5791 -0.5524 43 1 5.8589 0.8389 -1.5835 44 1 8.1841 0.5486 0.3958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689909440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = -204.810108 kcal Electronic energy + Delta-G solvation = -33454.337429 eV Core-core repulsion = 28521.343798 eV Total energy + Delta-G solvation = -4932.993631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.81267 -49.55884 -48.47347 -47.99229 -41.44379 -38.23206 -36.91578 -34.30592 -33.75468 -33.19319 -31.20500 -29.68561 -28.79616 -26.04132 -25.58213 -24.61133 -23.44310 -21.87142 -21.40018 -19.98821 -19.43926 -19.14707 -19.01039 -18.52329 -17.71083 -17.42136 -17.18302 -16.66266 -16.24123 -16.22359 -15.66484 -15.48902 -15.47897 -15.15554 -14.99487 -14.86311 -14.69097 -14.51933 -14.45249 -14.44676 -14.07353 -13.94586 -13.78035 -13.62548 -13.35710 -13.09813 -13.03395 -12.92309 -12.80056 -12.62676 -12.30771 -12.13513 -11.92400 -11.79592 -11.67251 -11.51222 -11.33019 -11.17995 -10.77603 -9.72813 -9.28307 -8.57365 -7.74765 -4.90753 1.39716 1.41877 1.49926 1.62108 1.97163 2.21339 2.66598 2.67910 2.77153 2.99415 3.03887 3.59837 3.65318 3.77232 3.81210 3.99354 4.00962 4.11952 4.17755 4.28827 4.33305 4.41107 4.42497 4.47859 4.69419 4.76418 4.86640 4.91817 4.99480 5.06729 5.12928 5.19183 5.30257 5.37125 5.48077 5.57354 5.63453 5.70377 5.97597 6.49429 6.69982 7.54327 7.63913 8.34939 8.59667 9.50173 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.006876 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.264106 B = 4070.861631 C = 6304.255533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.164 3.836 3 H 0.054 0.946 4 N -0.699 5.699 5 C -0.147 4.147 6 H 0.044 0.956 7 C -0.085 4.085 8 N -0.975 5.975 9 Si 0.940 3.060 10 H -0.294 1.294 11 H -0.300 1.300 12 H -0.292 1.292 13 C 0.152 3.848 14 H 0.092 0.908 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.133 4.133 18 C 0.103 3.897 19 N -0.609 5.609 20 C 0.477 3.523 21 O -0.493 6.493 22 C -0.179 4.179 23 C 0.249 3.751 24 F -0.199 7.199 25 F -0.189 7.189 26 C 0.244 3.756 27 F -0.179 7.179 28 F -0.202 7.202 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.370 0.630 33 H 0.239 0.761 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.946 -0.682 -20.643 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.055 3.945 3 H 0.072 0.928 4 N -0.340 5.340 5 C -0.280 4.280 6 H 0.062 0.938 7 C -0.275 4.275 8 N -0.631 5.631 9 Si 0.774 3.226 10 H -0.222 1.222 11 H -0.227 1.227 12 H -0.218 1.218 13 C 0.048 3.952 14 H 0.110 0.890 15 C -0.166 4.166 16 C -0.149 4.149 17 C -0.171 4.171 18 C -0.018 4.018 19 N -0.345 5.345 20 C 0.263 3.737 21 O -0.365 6.365 22 C -0.219 4.219 23 C 0.211 3.789 24 F -0.180 7.180 25 F -0.170 7.170 26 C 0.190 3.810 27 F -0.160 7.160 28 F -0.183 7.183 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.204 0.796 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.172 0.828 43 H 0.177 0.823 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 8.628 -0.142 -20.004 21.786 hybrid contribution -0.077 0.428 1.968 2.015 sum 8.551 0.286 -18.036 19.963 Atomic orbital electron populations 1.22428 0.98782 1.00603 1.00221 1.20778 0.91019 0.96716 0.85947 0.92798 1.42418 1.77033 1.09029 1.05498 1.19056 1.29262 0.92060 0.87653 0.93803 1.24947 1.06025 0.96779 0.99720 1.69738 1.56177 1.09327 1.27831 0.85570 0.76605 0.77707 0.82755 1.22179 1.22678 1.21818 1.21479 0.79850 0.96038 0.97794 0.88986 1.21896 1.00918 0.94819 0.98947 1.21482 0.95475 1.00275 0.97619 1.21915 0.96336 0.96340 1.02521 1.22031 0.97654 0.91193 0.90942 1.47911 1.06779 1.46985 1.32813 1.20503 0.89336 0.81491 0.82362 1.91101 1.67915 1.47801 1.29726 1.22895 0.95972 1.03138 0.99897 1.22334 0.92273 0.80389 0.83860 1.93043 1.83683 1.44910 1.96350 1.93172 1.94915 1.84036 1.44885 1.23179 0.91374 0.94242 0.72205 1.93042 1.94404 1.86932 1.41635 1.93030 1.89437 1.75218 1.60648 0.95570 0.91212 0.93632 0.79616 0.95245 0.94519 0.90947 0.89850 0.91585 0.87845 0.93905 0.88914 0.87958 0.82829 0.82257 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.91 9.15 71.98 0.66 -5.25 16 2 C 0.16 6.74 1.88 44.99 0.08 6.82 16 3 H 0.05 2.55 5.91 -6.13 -0.04 2.51 16 4 N -0.70 -36.10 3.61 -322.95 -1.17 -37.27 16 5 C -0.15 -8.85 7.98 84.03 0.67 -8.17 16 6 H 0.04 2.77 7.83 -2.91 -0.02 2.75 16 7 C -0.08 -5.32 5.50 84.86 0.47 -4.85 16 8 N -0.97 -62.89 13.06 21.65 0.28 -62.61 16 9 Si 0.94 52.35 29.55 68.60 2.03 54.38 16 10 H -0.29 -15.92 7.11 99.48 0.71 -15.22 16 11 H -0.30 -16.68 7.11 99.48 0.71 -15.97 16 12 H -0.29 -16.32 7.11 99.48 0.71 -15.61 16 13 C 0.15 4.58 2.72 44.98 0.12 4.70 16 14 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.13 -3.62 4.87 30.67 0.15 -3.47 16 16 C -0.11 -2.12 5.88 30.62 0.18 -1.94 16 17 C -0.13 -2.25 6.08 30.67 0.19 -2.06 16 18 C 0.10 1.65 6.33 86.36 0.55 2.20 16 19 N -0.61 -16.72 2.97 -795.02 -2.36 -19.08 16 20 C 0.48 16.32 7.15 87.66 0.63 16.95 16 21 O -0.49 -23.03 7.57 -3.03 -0.02 -23.06 16 22 C -0.18 -4.14 3.58 29.85 0.11 -4.04 16 23 C 0.25 7.63 1.40 30.59 0.04 7.67 16 24 F -0.20 -7.55 16.10 44.97 0.72 -6.83 16 25 F -0.19 -8.01 16.12 44.97 0.73 -7.29 16 26 C 0.24 5.11 4.83 71.98 0.35 5.46 16 27 F -0.18 -3.44 16.80 44.97 0.76 -2.68 16 28 F -0.20 -5.62 17.30 44.97 0.78 -4.84 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.66 7.04 -2.39 -0.02 1.65 16 32 H 0.37 20.28 5.61 -92.71 -0.52 19.76 16 33 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.04 1.38 6.03 -2.39 -0.01 1.37 16 35 H 0.07 1.99 7.04 -2.39 -0.02 1.97 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.11 5.96 -2.39 -0.01 1.09 16 42 H 0.15 2.45 7.48 -2.39 -0.02 2.43 16 43 H 0.16 2.35 7.77 -2.39 -0.02 2.33 16 44 H 0.20 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -85.48 354.01 6.43 -79.05 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.50 Total: 16.20 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 4.19 Total: 14.01 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -3.25 Total: -118.95 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.02 Total: -23.06 kcal Atomic # 9 Polarization: -24.62 SS G_CDS: 2.98 Total: -21.64 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 2.03 Total: 54.38 kcal Total: -85.48 6.43 -79.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689909440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.762 kcal (2) G-P(sol) polarization free energy of solvation -85.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds