Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00223 * 2 1 4 4 C 1.47198 * 109.47128 * 179.97438 * 3 2 1 5 5 C 3.40062 * 161.18884 * 0.02562 * 2 1 3 6 6 C 4.78781 * 168.18533 * 0.02562 * 2 1 3 7 7 N 1.46901 * 109.47116 * 69.58266 * 6 5 4 8 8 C 1.46902 * 111.00090 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47044 * 35.00388 * 8 7 6 10 10 C 1.52996 * 109.47223 * 275.00486 * 8 7 6 11 11 C 1.52999 * 109.47173 * 155.00161 * 8 7 6 12 12 H 1.09001 * 110.88321 * 65.47468 * 11 8 7 13 13 C 1.55158 * 111.00456 * 301.59742 * 11 8 7 14 14 C 1.54319 * 102.94016 * 206.42115 * 13 11 8 15 15 N 1.47023 * 107.27219 * 22.19409 * 14 13 11 16 16 C 1.34780 * 125.64968 * 181.02234 * 15 14 13 17 17 O 1.21275 * 120.00198 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99867 * 0.02562 * 16 15 14 19 19 S 1.80998 * 109.47177 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00201 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00050 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00103 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00130 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99941 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47296 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47064 * 119.99945 * 24 22 20 27 27 H 1.48502 * 109.47408 * 240.00005 * 24 22 20 28 28 C 1.47420 * 108.70256 * 1.28564 * 15 14 13 29 29 H 1.09003 * 109.47331 * 59.99519 * 1 2 3 30 30 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47133 * 299.99888 * 1 2 3 32 32 H 1.09006 * 109.46346 * 60.00047 * 3 2 1 33 33 H 1.08994 * 109.47348 * 300.00630 * 3 2 1 34 34 H 1.09003 * 109.47128 * 309.58800 * 6 5 4 35 35 H 1.08998 * 109.47177 * 189.58676 * 6 5 4 36 36 H 1.00904 * 111.00041 * 56.04917 * 7 6 5 37 37 H 1.09000 * 109.47049 * 295.26121 * 10 8 7 38 38 H 1.08997 * 109.47391 * 55.26407 * 10 8 7 39 39 H 1.09005 * 109.47285 * 175.26272 * 10 8 7 40 40 H 1.09005 * 110.72015 * 88.05780 * 13 11 8 41 41 H 1.09000 * 110.72153 * 324.78807 * 13 11 8 42 42 H 1.09000 * 109.88449 * 262.77430 * 14 13 11 43 43 H 1.09003 * 109.88184 * 141.60912 * 14 13 11 44 44 H 1.09009 * 109.47607 * 300.00204 * 18 16 15 45 45 H 1.08998 * 109.47218 * 59.99795 * 18 16 15 46 46 H 0.96999 * 120.00136 * 180.02562 * 23 22 20 47 47 H 1.09000 * 110.36943 * 94.48209 * 28 15 14 48 48 H 1.09005 * 110.36674 * 216.80556 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.4777 1.1892 0.0006 5 6 4.6480 1.0965 0.0005 6 6 6.1154 0.9803 0.0004 7 7 6.5653 0.4600 -1.2976 8 6 8.0282 0.3309 -1.3346 9 1 8.3922 0.0393 -0.3494 10 6 8.6486 1.6721 -1.7310 11 6 8.4204 -0.7353 -2.3594 12 1 8.1523 -0.4217 -3.3683 13 6 7.7761 -2.1035 -2.0127 14 6 8.7522 -3.1160 -2.6480 15 7 10.0484 -2.4383 -2.7969 16 6 11.1609 -2.9794 -3.3318 17 8 12.1792 -2.3248 -3.4040 18 6 11.1393 -4.3978 -3.8403 19 16 12.7714 -4.8297 -4.4928 20 6 12.4680 -6.4890 -5.0022 21 1 11.4901 -6.9261 -4.8640 22 6 13.4855 -7.2339 -5.5821 23 7 14.6771 -6.7011 -5.7510 24 14 13.1636 -8.9928 -6.1228 25 1 11.7537 -9.3520 -5.8252 26 1 13.4072 -9.1143 -7.5827 27 1 14.0737 -9.9101 -5.3910 28 6 9.9315 -1.0709 -2.2584 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 6.4259 0.2987 0.7924 35 1 6.5576 1.9617 0.1716 36 1 6.2346 1.0401 -2.0540 37 1 8.3514 1.9231 -2.7493 38 1 8.3016 2.4486 -1.0494 39 1 9.7349 1.6001 -1.6769 40 1 6.7863 -2.1885 -2.4614 41 1 7.7244 -2.2430 -0.9329 42 1 8.3813 -3.4256 -3.6251 43 1 8.8605 -3.9844 -1.9981 44 1 10.8848 -5.0730 -3.0232 45 1 10.3954 -4.4888 -4.6317 46 1 15.3881 -7.2216 -6.1566 47 1 10.2600 -1.0430 -1.2194 48 1 10.5154 -0.3748 -2.8606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699939018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = -54.471188 kcal Electronic energy + Delta-G solvation = -25663.624794 eV Core-core repulsion = 21845.220264 eV Total energy + Delta-G solvation = -3818.404530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11734 -39.27558 -38.91282 -37.47180 -34.84782 -34.59561 -32.98471 -31.38404 -30.80114 -29.22134 -28.51033 -27.66422 -26.95211 -25.72750 -24.43569 -22.85635 -21.27230 -20.67802 -19.57474 -18.44672 -18.02163 -17.46086 -17.42257 -16.90155 -16.89067 -16.79473 -16.39183 -16.22345 -15.64573 -15.61329 -15.36122 -14.75482 -14.49360 -14.34237 -14.17969 -13.94960 -13.74901 -13.69780 -13.55135 -13.48349 -13.29518 -13.14936 -13.02244 -12.91366 -12.60739 -12.45527 -12.15102 -11.93676 -11.76477 -11.68764 -11.51798 -11.29873 -11.16361 -11.09286 -10.97886 -10.48814 -10.29542 -9.68378 -9.37282 -8.69001 -8.35475 -6.14298 1.23684 1.40564 1.41327 1.44863 1.54870 1.56652 1.58890 2.11125 2.26597 2.93749 2.98697 3.13598 3.25631 3.52341 3.64743 3.70130 3.81282 4.05044 4.18114 4.24167 4.27459 4.31895 4.36049 4.40165 4.43744 4.45162 4.48674 4.50062 4.56486 4.59625 4.61672 4.72451 4.81151 4.88160 4.89564 4.91636 5.02627 5.04267 5.20450 5.28675 5.34935 5.41188 5.47654 5.98989 6.15626 6.19330 6.38099 6.40883 6.57928 7.05665 7.10900 8.74210 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.001650 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.212623 B =16961.841730 C =18497.784824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.173 3.827 4 C -0.207 4.207 5 C -0.159 4.159 6 C 0.172 3.828 7 N -0.682 5.682 8 C 0.106 3.894 9 H 0.092 0.908 10 C -0.184 4.184 11 C -0.077 4.077 12 H 0.084 0.916 13 C -0.096 4.096 14 C 0.087 3.913 15 N -0.617 5.617 16 C 0.545 3.455 17 O -0.568 6.568 18 C -0.120 4.120 19 S -0.150 6.150 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.273 1.273 28 C 0.109 3.891 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.349 0.651 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.272 0.728 47 H 0.074 0.926 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.576 18.716 13.824 37.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.098 3.902 4 C -0.209 4.209 5 C -0.159 4.159 6 C 0.045 3.955 7 N -0.313 5.313 8 C -0.004 4.004 9 H 0.110 0.890 10 C -0.243 4.243 11 C -0.096 4.096 12 H 0.102 0.898 13 C -0.134 4.134 14 C -0.035 4.035 15 N -0.352 5.352 16 C 0.333 3.667 17 O -0.447 6.447 18 C -0.271 4.271 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.014 4.014 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.168 0.832 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.854 18.806 13.813 36.336 hybrid contribution -0.650 -0.574 -0.520 1.011 sum -28.503 18.232 13.293 36.353 Atomic orbital electron populations 1.22982 0.78421 1.04089 1.01547 1.87935 1.22196 1.28031 1.95782 1.19291 0.82625 0.85246 1.03042 1.22415 0.93989 1.04190 1.00288 1.22726 0.94306 0.96991 1.01908 1.18974 0.82880 1.00464 0.93217 1.60431 1.10391 1.56312 1.04135 1.21372 0.86422 0.93605 0.99037 0.88970 1.22521 1.02079 0.97480 1.02235 1.22285 0.91465 0.95604 1.00291 0.89765 1.22445 0.97816 0.91493 1.01628 1.22414 0.82074 0.97135 1.01853 1.48462 1.10826 1.15628 1.60242 1.19752 0.82190 0.87873 0.76891 1.90675 1.32853 1.63539 1.57612 1.23304 1.03484 0.95991 1.04332 1.85545 1.11505 1.16647 1.78570 1.23228 1.00911 0.98341 1.46972 0.90000 1.26134 0.93932 1.04166 0.94809 1.70187 1.03115 1.39167 1.42270 0.84890 0.79006 0.75975 0.77965 1.18075 1.19819 1.19800 1.22406 0.97678 0.82349 0.98944 0.92444 0.88807 0.92311 0.89024 0.89133 0.87701 0.90841 0.83237 0.92089 0.91414 0.92000 0.88602 0.89769 0.90894 0.90724 0.87721 0.87765 0.91933 0.90792 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.42 -6.60 10.66 -148.98 -1.59 -8.19 16 3 C 0.17 2.00 6.41 70.18 0.45 2.45 16 4 C -0.21 -3.44 13.73 31.13 0.43 -3.02 16 5 C -0.16 -2.48 13.60 31.13 0.42 -2.06 16 6 C 0.17 1.79 5.96 84.50 0.50 2.30 16 7 N -0.68 -7.51 5.84 -501.31 -2.93 -10.44 16 8 C 0.11 1.16 2.13 44.91 0.10 1.25 16 9 H 0.09 0.94 7.70 -2.39 -0.02 0.92 16 10 C -0.18 -1.88 9.00 71.98 0.65 -1.23 16 11 C -0.08 -1.18 2.76 -9.33 -0.03 -1.20 16 12 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 13 C -0.10 -1.46 6.05 31.78 0.19 -1.27 16 14 C 0.09 1.84 6.48 86.73 0.56 2.41 16 15 N -0.62 -18.01 3.32 -811.37 -2.70 -20.71 16 16 C 0.54 22.05 7.87 87.66 0.69 22.74 16 17 O -0.57 -28.03 16.12 -3.01 -0.05 -28.08 16 18 C -0.12 -5.12 5.35 71.24 0.38 -4.73 16 19 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 20 C -0.55 -31.96 9.50 67.95 0.65 -31.32 16 21 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.83 5.49 84.86 0.47 1.30 16 23 N -0.91 -56.68 13.22 21.65 0.29 -56.40 16 24 Si 1.00 44.23 29.55 68.60 2.03 46.25 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 C 0.11 2.50 5.78 86.93 0.50 3.00 16 29 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.99 8.06 -2.39 -0.02 0.97 16 35 H 0.07 0.53 7.36 -2.39 -0.02 0.52 16 36 H 0.35 3.67 8.46 -89.69 -0.76 2.91 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.54 7.36 -2.39 -0.02 0.52 16 39 H 0.06 0.75 7.76 -2.38 -0.02 0.73 16 40 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.08 1.18 8.04 -2.39 -0.02 1.16 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 45 H 0.10 4.08 8.14 -2.40 -0.02 4.06 16 46 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.07 1.58 7.96 -2.39 -0.02 1.56 16 48 H 0.06 1.63 8.03 -2.38 -0.02 1.61 16 Total: -1.00 -81.53 416.28 1.29 -80.24 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.19 Total: 15.06 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 7.21 Total: -7.97 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -5.34 Total: -87.54 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.64 Total: -36.26 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -81.53 1.29 -80.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699939018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.770 kcal (2) G-P(sol) polarization free energy of solvation -81.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds