Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99764 * 179.97438 * 6 5 4 9 9 C 1.53001 * 110.91422 * 56.03542 * 8 6 5 10 10 C 1.54636 * 111.03786 * 292.02296 * 8 6 5 11 11 C 1.51093 * 104.72511 * 266.60233 * 10 8 6 12 12 C 1.30531 * 111.10615 * 343.56504 * 11 10 8 13 13 C 1.51102 * 111.10328 * 359.97438 * 12 11 10 14 14 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 15 15 C 1.46509 * 119.99920 * 60.00125 * 14 2 1 16 16 C 1.34776 * 120.00710 * 240.00300 * 14 2 1 17 17 O 1.21283 * 119.99682 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00475 * 180.02562 * 16 14 2 19 19 S 1.80998 * 109.47294 * 179.97438 * 18 16 14 20 20 C 1.76190 * 100.00244 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99926 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00206 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99880 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46973 * 90.00202 * 24 22 20 26 26 H 1.48504 * 109.47199 * 209.99857 * 24 22 20 27 27 H 1.48498 * 109.47364 * 329.99941 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 32 32 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 33 33 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 34 34 H 1.09006 * 109.47391 * 60.69581 * 9 8 6 35 35 H 1.08998 * 109.46964 * 180.70001 * 9 8 6 36 36 H 1.08996 * 109.47091 * 300.70071 * 9 8 6 37 37 H 1.08997 * 110.38704 * 25.41826 * 10 8 6 38 38 H 1.09005 * 110.38372 * 147.78708 * 10 8 6 39 39 H 1.07997 * 124.44820 * 163.58652 * 11 10 8 40 40 H 1.07996 * 124.45092 * 180.02562 * 12 11 10 41 41 H 1.08996 * 110.39191 * 257.62802 * 13 12 11 42 42 H 1.08997 * 110.48227 * 135.29734 * 13 12 11 43 43 H 1.09003 * 109.46975 * 89.99812 * 15 14 2 44 44 H 1.08995 * 109.47277 * 209.99863 * 15 14 2 45 45 H 1.09003 * 109.46743 * 330.00349 * 15 14 2 46 46 H 1.08994 * 109.46908 * 299.99876 * 18 16 14 47 47 H 1.09006 * 109.46757 * 60.00028 * 18 16 14 48 48 H 0.97000 * 120.00475 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5701 -1.8825 -3.1403 8 6 5.6751 -1.5359 -2.1310 9 6 6.1215 -2.2360 -0.8459 10 6 6.3371 -0.1448 -2.2650 11 6 6.6262 0.0024 -3.7407 12 6 6.5678 -1.1514 -4.3484 13 6 6.2307 -2.2604 -3.3792 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7931 -0.0356 2.0834 17 8 3.0865 1.1255 1.8913 18 6 3.2959 -0.7461 3.3136 19 16 4.3019 0.3914 4.2986 20 6 4.7444 -0.6694 5.6340 21 1 4.3932 -1.6905 5.6517 22 6 5.5434 -0.1923 6.6638 23 7 5.9702 1.0526 6.6431 24 14 6.0131 -1.3173 8.0793 25 1 7.2809 -2.0189 7.7542 26 1 6.1959 -0.5108 9.3128 27 1 4.9360 -2.3162 8.2961 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 5.7069 -3.2438 -0.8182 35 1 7.2099 -2.2900 -0.8208 36 1 5.7657 -1.6731 0.0170 37 1 5.6522 0.6352 -1.9325 38 1 7.2631 -0.1081 -1.6910 39 1 6.8518 0.9391 -4.2285 40 1 6.7389 -1.2946 -5.4051 41 1 7.1263 -2.8264 -3.1232 42 1 5.4737 -2.9203 -3.8030 43 1 2.4157 -2.7377 0.9718 44 1 1.6238 -2.2851 2.5002 45 1 0.6904 -2.3002 0.9847 46 1 2.4484 -1.0890 3.9070 47 1 3.9017 -1.6022 3.0165 48 1 6.5283 1.3861 7.3630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701227856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = -59.219265 kcal Electronic energy + Delta-G solvation = -28139.235999 eV Core-core repulsion = 24320.625577 eV Total energy + Delta-G solvation = -3818.610422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78061 -39.78789 -37.79899 -36.45680 -34.32776 -32.48280 -32.47334 -31.53305 -28.80411 -28.38718 -26.97182 -26.59576 -25.65586 -25.53021 -22.59813 -21.66780 -19.63688 -19.09114 -18.92523 -17.78895 -17.19988 -17.00863 -16.32785 -15.90983 -15.59021 -15.40981 -15.08119 -14.84707 -14.47218 -14.20167 -13.51351 -13.38719 -13.31418 -13.13676 -13.11185 -12.87158 -12.80657 -12.54773 -12.44696 -12.34516 -12.30900 -12.24734 -12.03795 -11.84488 -11.43264 -11.32910 -11.12545 -11.09816 -11.05969 -10.83833 -10.79706 -9.85787 -9.84878 -9.48714 -9.18920 -9.11255 -9.01813 -8.67730 -8.29191 -6.56094 -6.26545 -3.97596 2.12826 2.55826 2.78458 2.90815 3.06522 3.18738 3.22693 3.26839 3.53251 4.15555 4.23280 4.42207 4.46675 4.54895 4.79745 4.89754 4.99320 5.02735 5.05212 5.07960 5.08944 5.23578 5.32663 5.38941 5.42641 5.44677 5.48262 5.51981 5.52684 5.58056 5.64681 5.67141 5.76488 5.80717 5.81590 5.86683 5.91559 5.97182 6.02203 6.06495 6.29590 6.38166 6.55784 6.73102 7.38407 7.41932 7.54947 8.13286 8.30233 8.41994 9.19103 10.80749 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.003169 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.404652 B = 8833.495354 C =10360.685357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.109 0.891 4 C 0.112 3.888 5 N -0.722 5.722 6 C 0.532 3.468 7 O -0.542 6.542 8 C -0.089 4.089 9 C -0.137 4.137 10 C -0.089 4.089 11 C -0.173 4.173 12 C -0.157 4.157 13 C -0.083 4.083 14 N -0.619 5.619 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.151 4.151 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.405 0.595 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -6.744 -18.055 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 H 0.127 0.873 4 C -0.012 4.012 5 N -0.374 5.374 6 C 0.319 3.681 7 O -0.419 6.419 8 C -0.092 4.092 9 C -0.195 4.195 10 C -0.126 4.126 11 C -0.191 4.191 12 C -0.175 4.175 13 C -0.120 4.120 14 N -0.355 5.355 15 C -0.065 4.065 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.301 4.301 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.241 0.759 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.962 -5.209 -18.906 20.229 hybrid contribution 0.110 -1.918 1.509 2.442 sum -4.852 -7.126 -17.398 19.416 Atomic orbital electron populations 1.22055 0.93841 1.02629 1.03082 1.21290 0.94845 0.98553 0.83424 0.87297 1.21726 0.80430 1.01249 0.97845 1.45923 1.07565 1.59914 1.23983 1.20247 0.89284 0.76900 0.81710 1.90654 1.70073 1.47969 1.33223 1.21631 0.91596 0.97950 0.98027 1.21801 1.02348 1.00485 0.94829 1.21459 1.01066 0.94775 0.95280 1.23218 1.01906 0.98371 0.95565 1.23217 1.00206 0.94989 0.99076 1.21349 1.00871 0.97437 0.92358 1.47951 1.52214 1.12634 1.22738 1.21760 1.00669 0.81444 1.02652 1.20434 0.77140 0.86778 0.83657 1.90707 1.56332 1.16362 1.75557 1.23568 1.04332 1.04714 0.97533 1.85384 1.60837 1.15259 1.21809 1.22846 1.37371 0.99710 1.08484 0.90972 1.24979 0.95086 0.95506 0.97905 1.70006 1.33085 1.14309 1.32807 0.86186 0.78917 0.79955 0.80559 1.20242 1.20747 1.19695 0.92004 0.91168 0.91384 0.91237 0.90593 0.75896 0.91884 0.90933 0.91513 0.90691 0.89142 0.85737 0.85839 0.89964 0.89544 0.92781 0.90527 0.91160 0.89218 0.89279 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.17 37.16 0.34 -0.99 16 2 C 0.12 1.33 2.80 -67.94 -0.19 1.14 16 3 H 0.11 1.40 6.90 -51.93 -0.36 1.04 16 4 C 0.11 1.18 4.97 -4.05 -0.02 1.16 16 5 N -0.72 -8.48 5.22 -60.30 -0.31 -8.80 16 6 C 0.53 6.83 6.51 -10.98 -0.07 6.75 16 7 O -0.54 -8.47 15.53 5.56 0.09 -8.38 16 8 C -0.09 -0.97 0.84 -153.93 -0.13 -1.10 16 9 C -0.14 -1.37 8.36 37.16 0.31 -1.05 16 10 C -0.09 -0.93 5.93 -26.83 -0.16 -1.09 16 11 C -0.17 -1.76 10.77 -35.70 -0.38 -2.14 16 12 C -0.16 -1.59 10.78 -35.70 -0.38 -1.97 16 13 C -0.08 -0.86 5.72 -26.82 -0.15 -1.01 16 14 N -0.62 -7.61 2.24 -173.93 -0.39 -8.00 16 15 C 0.08 0.75 9.40 59.85 0.56 1.31 16 16 C 0.53 9.02 7.40 -10.99 -0.08 8.94 16 17 O -0.52 -10.56 15.19 5.56 0.08 -10.48 16 18 C -0.15 -2.84 4.71 36.01 0.17 -2.67 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -14.71 9.50 30.94 0.29 -14.41 16 21 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.43 13.22 55.49 0.73 -24.70 16 24 Si 0.92 20.85 29.55 -169.99 -5.02 15.82 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H 0.06 0.45 6.66 -51.93 -0.35 0.11 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.41 5.03 7.15 -40.82 -0.29 4.74 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.07 0.72 7.46 -51.93 -0.39 0.33 16 37 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 38 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.08 0.72 7.89 -51.93 -0.41 0.31 16 42 H 0.09 1.01 7.01 -51.93 -0.36 0.64 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 45 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 46 H 0.09 1.59 7.40 -51.92 -0.38 1.20 16 47 H 0.09 1.54 8.11 -51.91 -0.42 1.12 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -33.71 401.27 -8.76 -42.47 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.78 Total: 4.93 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 0.01 Total: -5.17 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.03 Total: -41.50 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.17 Total: -18.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.71 -8.76 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701227856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.753 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds