Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99764 * 179.97438 * 6 5 4 9 9 C 1.53001 * 110.91422 * 56.03542 * 8 6 5 10 10 C 1.54636 * 111.03786 * 292.02296 * 8 6 5 11 11 C 1.51093 * 104.72511 * 266.60233 * 10 8 6 12 12 C 1.30531 * 111.10615 * 343.56504 * 11 10 8 13 13 C 1.51102 * 111.10328 * 359.97438 * 12 11 10 14 14 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 15 15 C 1.46509 * 119.99920 * 60.00125 * 14 2 1 16 16 C 1.34776 * 120.00710 * 240.00300 * 14 2 1 17 17 O 1.21283 * 119.99682 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00475 * 180.02562 * 16 14 2 19 19 S 1.80998 * 109.47294 * 179.97438 * 18 16 14 20 20 C 1.76190 * 100.00244 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99926 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00206 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99880 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46973 * 90.00202 * 24 22 20 26 26 H 1.48504 * 109.47199 * 209.99857 * 24 22 20 27 27 H 1.48498 * 109.47364 * 329.99941 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 32 32 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 33 33 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 34 34 H 1.09006 * 109.47391 * 60.69581 * 9 8 6 35 35 H 1.08998 * 109.46964 * 180.70001 * 9 8 6 36 36 H 1.08996 * 109.47091 * 300.70071 * 9 8 6 37 37 H 1.08997 * 110.38704 * 25.41826 * 10 8 6 38 38 H 1.09005 * 110.38372 * 147.78708 * 10 8 6 39 39 H 1.07997 * 124.44820 * 163.58652 * 11 10 8 40 40 H 1.07996 * 124.45092 * 180.02562 * 12 11 10 41 41 H 1.08996 * 110.39191 * 257.62802 * 13 12 11 42 42 H 1.08997 * 110.48227 * 135.29734 * 13 12 11 43 43 H 1.09003 * 109.46975 * 89.99812 * 15 14 2 44 44 H 1.08995 * 109.47277 * 209.99863 * 15 14 2 45 45 H 1.09003 * 109.46743 * 330.00349 * 15 14 2 46 46 H 1.08994 * 109.46908 * 299.99876 * 18 16 14 47 47 H 1.09006 * 109.46757 * 60.00028 * 18 16 14 48 48 H 0.97000 * 120.00475 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5701 -1.8825 -3.1403 8 6 5.6751 -1.5359 -2.1310 9 6 6.1215 -2.2360 -0.8459 10 6 6.3371 -0.1448 -2.2650 11 6 6.6262 0.0024 -3.7407 12 6 6.5678 -1.1514 -4.3484 13 6 6.2307 -2.2604 -3.3792 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7931 -0.0356 2.0834 17 8 3.0865 1.1255 1.8913 18 6 3.2959 -0.7461 3.3136 19 16 4.3019 0.3914 4.2986 20 6 4.7444 -0.6694 5.6340 21 1 4.3932 -1.6905 5.6517 22 6 5.5434 -0.1923 6.6638 23 7 5.9702 1.0526 6.6431 24 14 6.0131 -1.3173 8.0793 25 1 7.2809 -2.0189 7.7542 26 1 6.1959 -0.5108 9.3128 27 1 4.9360 -2.3162 8.2961 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 3.9824 -0.4628 -0.4315 34 1 5.7069 -3.2438 -0.8182 35 1 7.2099 -2.2900 -0.8208 36 1 5.7657 -1.6731 0.0170 37 1 5.6522 0.6352 -1.9325 38 1 7.2631 -0.1081 -1.6910 39 1 6.8518 0.9391 -4.2285 40 1 6.7389 -1.2946 -5.4051 41 1 7.1263 -2.8264 -3.1232 42 1 5.4737 -2.9203 -3.8030 43 1 2.4157 -2.7377 0.9718 44 1 1.6238 -2.2851 2.5002 45 1 0.6904 -2.3002 0.9847 46 1 2.4484 -1.0890 3.9070 47 1 3.9017 -1.6022 3.0165 48 1 6.5283 1.3861 7.3630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701227856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = -79.964180 kcal Electronic energy + Delta-G solvation = -28140.135566 eV Core-core repulsion = 24320.625577 eV Total energy + Delta-G solvation = -3819.509989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74961 -40.95664 -38.75892 -37.59494 -35.38551 -34.56440 -33.44448 -32.42058 -30.18531 -29.20348 -27.87560 -27.63813 -27.45928 -26.46426 -23.53384 -22.73269 -20.71303 -20.07728 -19.82575 -19.55379 -18.31267 -18.10963 -17.34256 -16.92815 -16.85573 -16.76783 -16.40990 -16.20552 -15.83275 -15.40752 -14.65590 -14.58290 -14.50781 -14.13518 -14.08804 -13.92178 -13.74063 -13.59169 -13.51011 -13.26138 -13.17445 -13.10747 -13.08927 -13.04521 -12.88553 -12.80311 -12.57754 -12.26097 -12.12243 -11.95439 -11.69755 -11.66924 -11.12522 -10.88354 -10.85855 -10.23503 -10.16824 -9.83414 -9.74595 -8.63416 -8.32942 -6.09823 1.27016 1.34132 1.42983 1.46881 1.55440 1.56249 1.57078 2.01103 2.19539 2.29168 3.01541 3.27945 3.39663 3.55417 3.58939 3.67644 3.82062 4.03748 4.07314 4.19105 4.21475 4.29588 4.30574 4.42369 4.50118 4.56411 4.60466 4.63514 4.66930 4.71009 4.78277 4.79118 4.86306 4.89834 4.95466 4.98504 5.02443 5.10211 5.21304 5.24006 5.36761 5.43968 5.56825 5.59732 5.95323 6.21173 6.24258 6.39826 7.09075 7.12728 7.13142 8.75840 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.003169 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.404652 B = 8833.495354 C =10360.685357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.720 5.720 6 C 0.531 3.469 7 O -0.572 6.572 8 C -0.089 4.089 9 C -0.133 4.133 10 C -0.090 4.090 11 C -0.182 4.182 12 C -0.162 4.162 13 C -0.082 4.082 14 N -0.602 5.602 15 C 0.069 3.931 16 C 0.534 3.466 17 O -0.559 6.559 18 C -0.126 4.126 19 S -0.144 6.144 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.994 3.006 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.259 1.259 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.402 0.598 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -9.068 -18.458 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.370 5.370 6 C 0.318 3.682 7 O -0.451 6.451 8 C -0.092 4.092 9 C -0.191 4.191 10 C -0.127 4.127 11 C -0.200 4.200 12 C -0.180 4.180 13 C -0.119 4.119 14 N -0.337 5.337 15 C -0.073 4.073 16 C 0.322 3.678 17 O -0.437 6.437 18 C -0.277 4.277 19 S 0.084 5.916 20 C -0.693 4.693 21 H 0.099 0.901 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.816 3.184 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.183 1.183 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.747 -7.566 -19.329 21.538 hybrid contribution 0.250 -1.219 1.516 1.961 sum -5.497 -8.784 -17.813 20.608 Atomic orbital electron populations 1.22026 0.91414 1.04031 1.03455 1.21368 0.96538 0.97158 0.82666 0.89649 1.21775 0.79719 1.01764 0.97576 1.45988 1.08180 1.59305 1.23565 1.20565 0.90058 0.76304 0.81252 1.90636 1.70814 1.49395 1.34264 1.21663 0.90395 0.98361 0.98807 1.21784 1.03156 1.00337 0.93803 1.21482 1.01089 0.94250 0.95904 1.23375 1.02218 0.99070 0.95330 1.23423 0.99900 0.94817 0.99854 1.21366 1.01097 0.97416 0.92064 1.47882 1.50272 1.13614 1.21920 1.22042 1.02525 0.79411 1.03286 1.20108 0.77693 0.86188 0.83842 1.90698 1.58328 1.18164 1.76526 1.23388 1.03652 1.03189 0.97437 1.85534 1.63155 1.19252 1.23692 1.23184 1.37319 1.00017 1.08773 0.90078 1.26050 0.94897 0.97047 1.00891 1.70167 1.34068 1.16483 1.33921 0.85022 0.79003 0.77844 0.76553 1.19306 1.20520 1.18286 0.90026 0.89445 0.92431 0.90127 0.90234 0.76261 0.91430 0.89687 0.92629 0.91781 0.88428 0.84558 0.84377 0.88280 0.90861 0.91922 0.90336 0.88239 0.87716 0.87520 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.17 71.98 0.66 -1.53 16 2 C 0.13 2.56 2.80 44.99 0.13 2.68 16 3 H 0.09 2.21 6.90 -2.39 -0.02 2.19 16 4 C 0.12 2.25 4.97 86.38 0.43 2.68 16 5 N -0.72 -16.43 5.22 -463.06 -2.42 -18.85 16 6 C 0.53 13.28 6.51 87.66 0.57 13.85 16 7 O -0.57 -17.45 15.53 -3.02 -0.05 -17.50 16 8 C -0.09 -1.88 0.84 -51.81 -0.04 -1.92 16 9 C -0.13 -2.52 8.36 71.98 0.60 -1.92 16 10 C -0.09 -1.86 5.93 30.53 0.18 -1.68 16 11 C -0.18 -3.55 10.77 26.25 0.28 -3.27 16 12 C -0.16 -3.09 10.78 26.26 0.28 -2.81 16 13 C -0.08 -1.62 5.72 30.54 0.17 -1.44 16 14 N -0.60 -13.90 2.24 -822.59 -1.85 -15.75 16 15 C 0.07 1.13 9.40 127.77 1.20 2.33 16 16 C 0.53 17.98 7.40 87.66 0.65 18.63 16 17 O -0.56 -23.59 15.19 -3.04 -0.05 -23.63 16 18 C -0.13 -4.65 4.71 71.24 0.34 -4.31 16 19 S -0.14 -7.58 20.57 -56.49 -1.16 -8.75 16 20 C -0.55 -30.01 9.50 67.95 0.65 -29.36 16 21 H 0.08 4.15 7.80 -2.91 -0.02 4.13 16 22 C 0.02 0.89 5.49 84.86 0.47 1.36 16 23 N -0.91 -54.48 13.22 21.65 0.29 -54.20 16 24 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 28 H 0.08 0.88 6.66 -2.39 -0.02 0.86 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.08 1.44 7.84 -2.39 -0.02 1.42 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.40 9.95 7.15 -92.71 -0.66 9.28 16 34 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 36 H 0.05 1.17 7.46 -2.39 -0.02 1.15 16 37 H 0.06 1.44 7.85 -2.39 -0.02 1.43 16 38 H 0.10 1.85 7.88 -2.38 -0.02 1.83 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.10 1.58 7.89 -2.39 -0.02 1.56 16 42 H 0.07 1.66 7.01 -2.39 -0.02 1.64 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.30 6.44 -2.39 -0.02 1.28 16 45 H 0.10 1.09 6.43 -2.39 -0.02 1.08 16 46 H 0.10 3.56 7.40 -2.40 -0.02 3.54 16 47 H 0.11 3.56 8.11 -2.39 -0.02 3.54 16 48 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.97 401.27 3.65 -71.32 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.29 Total: 29.60 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 6.56 Total: -6.71 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.98 Total: -88.80 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.09 Total: -41.13 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.75 kcal Total: -74.97 3.65 -71.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701227856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.640 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds