Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 C 1.53003 * 112.84598 * 50.33305 * 7 5 4 9 9 C 1.53779 * 113.61399 * 279.14321 * 7 5 4 10 10 C 1.53953 * 87.01794 * 220.04468 * 9 7 5 11 11 C 1.53771 * 113.61766 * 181.53222 * 7 5 4 12 12 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 13 13 C 1.53946 * 113.74100 * 156.67171 * 12 2 1 14 14 N 1.47578 * 86.11976 * 222.05046 * 13 12 2 15 15 C 1.34780 * 134.49697 * 204.64752 * 14 13 12 16 16 O 1.21275 * 120.00268 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99371 * 359.97438 * 15 14 13 18 18 S 1.81003 * 109.46673 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99849 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99948 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00123 * 180.02562 * 19 18 17 22 22 N 1.31638 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00328 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46816 * 90.00050 * 23 21 19 25 25 H 1.48493 * 109.47458 * 210.00219 * 23 21 19 26 26 H 1.48502 * 109.46993 * 330.00466 * 23 21 19 27 27 C 1.47582 * 91.01613 * 24.64178 * 14 13 12 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 1.08995 * 109.47022 * 69.67205 * 8 7 5 33 33 H 1.08996 * 109.46712 * 189.67005 * 8 7 5 34 34 H 1.08997 * 109.47245 * 309.66961 * 8 7 5 35 35 H 1.08999 * 113.61381 * 334.56059 * 9 7 5 36 36 H 1.08999 * 113.61874 * 105.46671 * 9 7 5 37 37 H 1.08997 * 113.53469 * 270.80791 * 10 9 7 38 38 H 1.09000 * 113.74666 * 139.93959 * 10 9 7 39 39 H 1.09004 * 113.61793 * 254.53087 * 11 7 5 40 40 H 1.09002 * 113.61489 * 25.43212 * 11 7 5 41 41 H 1.08995 * 112.94648 * 288.40645 * 12 2 1 42 42 H 1.08997 * 113.76906 * 336.35314 * 13 12 2 43 43 H 1.08997 * 113.76808 * 107.74821 * 13 12 2 44 44 H 1.09002 * 109.47166 * 300.00298 * 17 15 14 45 45 H 1.08998 * 109.47199 * 60.00622 * 17 15 14 46 46 H 0.96998 * 120.00048 * 179.97438 * 22 21 19 47 47 H 1.08999 * 113.77246 * 221.06204 * 27 14 13 48 48 H 1.08992 * 113.87087 * 89.67461 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 6 3.9509 -1.5071 3.3289 9 6 1.5813 -1.5413 4.3160 10 6 2.2064 -1.0391 5.6302 11 6 2.7204 0.1709 4.8325 12 6 2.0400 -0.7213 -1.2492 13 6 3.4665 -0.3145 -1.6608 14 7 2.9583 -0.3119 -3.0463 15 6 3.5237 -0.4653 -4.2601 16 8 2.8380 -0.4148 -5.2592 17 6 5.0079 -0.6998 -4.3757 18 16 5.4585 -0.8639 -6.1211 19 6 7.1944 -1.1231 -5.9658 20 1 7.6525 -1.1402 -4.9879 21 6 7.9732 -1.3041 -7.1003 22 7 7.4151 -1.2817 -8.2923 23 14 9.8137 -1.5782 -6.9358 24 1 10.0889 -3.0327 -6.8175 25 1 10.5036 -1.0398 -8.1355 26 1 10.3117 -0.8800 -5.7234 27 6 1.5822 -0.0740 -2.5689 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6318 1.1526 32 1 4.7712 -0.8091 3.1617 33 1 4.1753 -2.1310 4.1939 34 1 3.8254 -2.1377 2.4487 35 1 0.5684 -1.1760 4.1467 36 1 1.6739 -2.6176 4.1707 37 1 3.0009 -1.6825 6.0080 38 1 1.4732 -0.7791 6.3938 39 1 3.7315 0.4750 5.1036 40 1 2.0196 1.0053 4.8047 41 1 1.8828 -1.7992 -1.2114 42 1 3.7639 0.6701 -1.3000 43 1 4.2151 -1.0832 -1.4689 44 1 5.5439 0.1435 -3.9402 45 1 5.2740 -1.6133 -3.8440 46 1 7.9595 -1.4079 -9.0851 47 1 0.8264 -0.6506 -3.1021 48 1 1.3243 0.9808 -2.4746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701313672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = -27.327716 kcal Electronic energy + Delta-G solvation = -26887.832091 eV Core-core repulsion = 23070.604590 eV Total energy + Delta-G solvation = -3817.227501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13256 -40.27650 -38.36847 -37.50879 -35.33431 -32.44327 -31.91571 -30.24644 -29.49931 -27.92191 -26.24652 -26.09879 -25.44905 -25.41546 -23.65355 -21.26434 -20.91510 -19.14590 -18.90706 -17.76223 -17.54961 -16.90786 -16.58500 -15.79280 -15.63696 -15.42622 -15.07305 -14.84616 -14.81712 -14.14727 -14.02400 -13.96059 -13.64792 -13.18067 -13.09801 -12.93088 -12.85891 -12.76409 -12.64164 -12.51590 -12.44661 -11.96008 -11.83157 -11.77427 -11.58057 -11.18588 -11.07687 -11.05704 -11.01461 -10.96563 -10.77762 -10.75779 -9.88124 -9.83369 -9.53141 -9.29398 -9.08120 -8.61704 -8.25524 -6.52136 -6.22984 -3.93962 2.30513 2.70788 2.77828 3.05032 3.21000 3.22998 3.28795 3.53556 3.95334 3.95939 4.06575 4.18746 4.23690 4.32869 4.36306 4.53357 4.61112 4.77058 4.94903 4.97672 5.02732 5.08581 5.11205 5.12329 5.16016 5.26159 5.30896 5.32102 5.32734 5.38010 5.41542 5.46732 5.55956 5.56231 5.57540 5.61990 5.74773 5.80983 5.87497 5.92476 5.96174 6.01878 6.12383 6.17572 7.15822 7.58009 7.79801 7.91421 8.33742 8.52729 9.22099 10.84441 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.002082 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.431545 B =13443.458165 C =14918.346563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.093 0.907 4 N -0.723 5.723 5 C 0.530 3.470 6 O -0.538 6.538 7 C -0.112 4.112 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.141 4.141 11 C -0.115 4.115 12 C -0.133 4.133 13 C 0.109 3.891 14 N -0.652 5.652 15 C 0.556 3.444 16 O -0.515 6.515 17 C -0.145 4.145 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.120 3.880 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.084 0.916 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.370 -1.652 28.820 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.111 0.889 4 N -0.374 5.374 5 C 0.317 3.683 6 O -0.414 6.414 7 C -0.115 4.115 8 C -0.186 4.186 9 C -0.159 4.159 10 C -0.179 4.179 11 C -0.152 4.152 12 C -0.153 4.153 13 C -0.014 4.014 14 N -0.390 5.390 15 C 0.345 3.655 16 O -0.388 6.388 17 C -0.295 4.295 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.003 4.003 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.464 -0.753 26.924 30.112 hybrid contribution 2.148 -0.680 1.150 2.529 sum -11.316 -1.434 28.073 30.302 Atomic orbital electron populations 1.22161 0.94723 1.02409 1.02837 1.20962 0.94447 0.97328 0.82700 0.88860 1.46098 1.67606 1.14090 1.09624 1.20413 0.76947 0.86939 0.84032 1.90697 1.50095 1.15955 1.84695 1.22182 0.97848 0.98632 0.92823 1.21606 0.94777 0.99704 1.02467 1.22949 0.97612 0.99668 0.95682 1.22862 1.00646 0.97950 0.96423 1.22875 1.02625 0.96974 0.92767 1.23508 0.96641 1.01482 0.93638 1.23208 0.96301 1.01806 0.80080 1.49988 1.10008 1.73915 1.05135 1.20048 0.89550 0.75146 0.80722 1.90712 1.63977 1.49346 1.34813 1.23472 0.93349 1.04491 1.08222 1.85407 1.07930 1.94161 0.95900 1.22850 0.92564 1.57245 0.95656 0.90951 1.25002 0.99500 0.94659 0.94461 1.70021 1.36224 1.46353 0.97642 0.86157 0.82841 0.78543 0.77892 1.20253 1.20721 1.19699 1.23007 0.86410 1.00605 0.90316 0.92232 0.92011 0.91188 0.76506 0.91499 0.91191 0.91832 0.89764 0.90550 0.89839 0.91014 0.90913 0.88777 0.87422 0.89708 0.89856 0.89386 0.89396 0.92161 0.89759 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.29 37.16 0.35 -0.77 16 2 C 0.15 1.09 2.42 -67.93 -0.16 0.92 16 3 H 0.09 0.85 7.37 -51.93 -0.38 0.47 16 4 N -0.72 -4.65 4.96 -53.81 -0.27 -4.92 16 5 C 0.53 4.54 6.88 -10.98 -0.08 4.46 16 6 O -0.54 -6.75 15.57 5.55 0.09 -6.66 16 7 C -0.11 -0.69 1.25 -154.85 -0.19 -0.88 16 8 C -0.13 -0.60 8.98 37.16 0.33 -0.26 16 9 C -0.12 -0.60 7.21 -25.83 -0.19 -0.78 16 10 C -0.14 -0.67 7.74 -25.83 -0.20 -0.87 16 11 C -0.11 -0.75 6.99 -25.93 -0.18 -0.94 16 12 C -0.13 -1.00 3.50 -89.69 -0.31 -1.32 16 13 C 0.11 1.06 8.17 -2.98 -0.02 1.04 16 14 N -0.65 -9.20 3.61 -178.35 -0.64 -9.84 16 15 C 0.56 10.90 8.07 -10.98 -0.09 10.81 16 16 O -0.51 -12.20 16.59 5.56 0.09 -12.11 16 17 C -0.14 -3.02 5.91 36.01 0.21 -2.80 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.12 1.25 7.46 -2.97 -0.02 1.23 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.44 7.43 -51.93 -0.39 0.06 16 31 H 0.40 1.71 7.59 -40.82 -0.31 1.41 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.26 7.34 -51.93 -0.38 -0.12 16 34 H 0.06 0.23 7.11 -51.93 -0.37 -0.14 16 35 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 37 H 0.08 0.32 7.64 -51.93 -0.40 -0.08 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.09 0.78 7.45 -51.93 -0.39 0.39 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 LS Contribution 405.87 15.07 6.12 6.12 Total: -1.00 -36.86 405.87 -9.53 -46.39 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.05 Total: -2.81 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.36 Total: -3.17 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.18 Total: -40.26 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.18 Total: -18.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.86 -9.53 -46.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701313672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.059 kcal (2) G-P(sol) polarization free energy of solvation -36.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds