Wall clock time and date at job start Sat Apr 11 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46969 * 2 1 4 4 N 1.46490 * 109.47189 * 239.99532 * 2 1 3 5 5 C 1.34779 * 119.99963 * 85.00178 * 4 2 1 6 6 O 1.21279 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00042 * 179.97438 * 5 4 2 8 8 C 1.53004 * 112.84878 * 50.33215 * 7 5 4 9 9 C 1.53774 * 113.61502 * 279.13636 * 7 5 4 10 10 C 1.53947 * 87.02016 * 220.04664 * 9 7 5 11 11 C 1.53775 * 113.61541 * 181.52809 * 7 5 4 12 12 C 1.52996 * 109.46838 * 119.99521 * 2 1 3 13 13 C 1.53500 * 114.20750 * 185.05743 * 12 2 1 14 14 N 1.47061 * 87.98617 * 139.65554 * 13 12 2 15 15 C 1.34779 * 136.05554 * 152.84292 * 14 13 12 16 16 O 1.21281 * 120.00035 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00240 * 179.72234 * 15 14 13 18 18 S 1.80996 * 109.47278 * 180.27865 * 17 15 14 19 19 C 1.76205 * 99.99801 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00085 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00037 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99751 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00041 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47026 * 89.99912 * 23 21 19 25 25 H 1.48505 * 109.46976 * 210.00164 * 23 21 19 26 26 H 1.48498 * 109.47165 * 329.99654 * 23 21 19 27 27 C 1.47056 * 87.88913 * 333.10068 * 14 13 12 28 28 H 1.08996 * 109.47434 * 179.12497 * 1 2 3 29 29 H 1.09007 * 109.47362 * 299.12905 * 1 2 3 30 30 H 1.09003 * 109.46923 * 59.12339 * 1 2 3 31 31 H 0.96997 * 120.00200 * 265.00001 * 4 2 1 32 32 H 1.09007 * 109.46894 * 69.66503 * 8 7 5 33 33 H 1.08991 * 109.47268 * 189.66803 * 8 7 5 34 34 H 1.08998 * 109.46999 * 309.67189 * 8 7 5 35 35 H 1.09007 * 113.61582 * 334.57028 * 9 7 5 36 36 H 1.09008 * 113.61564 * 105.46931 * 9 7 5 37 37 H 1.09000 * 113.53802 * 270.80733 * 10 9 7 38 38 H 1.09008 * 113.74332 * 139.94218 * 10 9 7 39 39 H 1.08999 * 113.61508 * 254.53028 * 11 7 5 40 40 H 1.09002 * 113.61378 * 25.43149 * 11 7 5 41 41 H 1.09002 * 113.28813 * 51.98796 * 12 2 1 42 42 H 1.08999 * 113.46754 * 24.87286 * 13 12 2 43 43 H 1.08997 * 113.51843 * 254.44651 * 13 12 2 44 44 H 1.09004 * 109.46903 * 300.27734 * 17 15 14 45 45 H 1.08998 * 109.46921 * 60.27325 * 17 15 14 46 46 H 0.97001 * 120.00107 * 179.97438 * 22 21 19 47 47 H 1.08996 * 113.47108 * 141.68128 * 27 14 13 48 48 H 1.09004 * 113.47153 * 272.12171 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6500 -0.7287 -3.5874 8 6 1.9032 -2.0347 -3.8664 9 6 4.1803 -0.8724 -3.6335 10 6 4.0843 -0.5560 -5.1370 11 6 2.7748 0.1845 -4.8182 12 6 2.0399 -0.7211 1.2493 13 6 3.5645 -0.6786 1.4224 14 7 3.3433 -0.4660 2.8606 15 6 4.0245 -0.7206 3.9953 16 8 5.1099 -1.2594 3.9431 17 6 3.4409 -0.3297 5.3286 18 16 4.5885 -0.7936 6.6490 19 6 3.6802 -0.2380 8.0530 20 1 2.7148 0.2280 7.9217 21 6 4.2059 -0.3983 9.3276 22 7 5.3827 -0.9659 9.4875 23 14 3.2433 0.1913 10.8159 24 1 2.3708 -0.9053 11.3073 25 1 4.1879 0.5913 11.8897 26 1 2.4060 1.3567 10.4339 27 6 2.0486 0.1407 2.5164 28 1 -0.3634 -1.0275 -0.0157 29 1 -0.3634 0.5003 0.8977 30 1 -0.3633 0.5274 -0.8820 31 1 2.2490 -1.6318 -1.1524 32 1 0.8843 -1.8102 -4.1821 33 1 2.4154 -2.5846 -4.6558 34 1 1.8776 -2.6394 -2.9599 35 1 4.7079 -0.1103 -3.0597 36 1 4.5307 -1.8823 -3.4203 37 1 3.9457 -1.4397 -5.7598 38 1 4.8781 0.0971 -5.4997 39 1 1.9922 0.0267 -5.5603 40 1 2.9174 1.2361 -4.5690 41 1 1.6022 -1.7102 1.3848 42 1 4.0343 0.1702 0.9254 43 1 4.0548 -1.6248 1.1938 44 1 3.2769 0.7477 5.3515 45 1 2.4915 -0.8449 5.4746 46 1 5.7503 -1.0776 10.3782 47 1 1.2516 -0.1108 3.2161 48 1 2.1104 1.2099 2.3137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701313673.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:48 Heat of formation + Delta-G solvation = -24.107058 kcal Electronic energy + Delta-G solvation = -26854.751848 eV Core-core repulsion = 23037.664005 eV Total energy + Delta-G solvation = -3817.087843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16553 -40.37995 -38.36941 -37.56250 -35.37371 -32.44612 -31.88052 -30.31540 -29.64025 -27.80981 -26.22003 -26.06466 -25.52203 -25.31349 -23.63360 -21.35227 -20.94123 -19.13588 -18.94039 -17.78430 -17.54710 -16.85813 -16.55900 -15.78703 -15.71849 -15.38862 -15.11738 -14.81827 -14.60690 -14.39425 -14.04451 -13.96699 -13.83911 -13.23695 -12.95077 -12.88357 -12.83050 -12.68531 -12.62870 -12.58980 -12.45480 -12.00493 -11.83371 -11.79175 -11.57148 -11.25766 -11.07710 -11.04549 -10.95695 -10.83915 -10.77266 -10.73679 -9.87300 -9.83949 -9.53428 -9.34028 -9.08274 -8.64301 -8.26238 -6.52651 -6.23235 -3.94290 2.31180 2.71261 2.75370 3.02581 3.21237 3.23425 3.28978 3.54009 3.94802 3.98727 4.06739 4.18606 4.27730 4.34387 4.35344 4.51676 4.61298 4.76611 4.86865 4.97857 5.02755 5.07672 5.11929 5.15768 5.18470 5.26710 5.30194 5.32864 5.36011 5.38293 5.44245 5.44893 5.54504 5.54708 5.57645 5.62732 5.75168 5.79335 5.86741 5.95641 5.97396 5.98947 6.12019 6.15541 7.16401 7.58036 7.81779 7.91615 8.33659 8.50548 9.21937 10.84224 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.001852 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.281858 B =15114.629407 C =15737.584777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.093 0.907 4 N -0.723 5.723 5 C 0.531 3.469 6 O -0.538 6.538 7 C -0.113 4.113 8 C -0.127 4.127 9 C -0.122 4.122 10 C -0.141 4.141 11 C -0.114 4.114 12 C -0.139 4.139 13 C 0.113 3.887 14 N -0.653 5.653 15 C 0.563 3.437 16 O -0.514 6.514 17 C -0.144 4.144 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.920 3.080 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.083 0.917 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -0.956 -29.505 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.111 0.889 4 N -0.374 5.374 5 C 0.317 3.683 6 O -0.415 6.415 7 C -0.116 4.116 8 C -0.184 4.184 9 C -0.160 4.160 10 C -0.179 4.179 11 C -0.152 4.152 12 C -0.158 4.158 13 C -0.010 4.010 14 N -0.392 5.392 15 C 0.352 3.648 16 O -0.387 6.387 17 C -0.295 4.295 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.011 4.011 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.235 0.765 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.513 -1.004 -29.240 30.470 hybrid contribution -1.806 0.567 1.157 2.219 sum -10.319 -0.437 -28.083 29.922 Atomic orbital electron populations 1.22149 0.94628 1.02385 1.02847 1.20876 0.94429 0.97189 0.82590 0.88916 1.46064 1.67554 1.14198 1.09581 1.20410 0.76653 0.87036 0.84178 1.90694 1.49697 1.16086 1.84991 1.22187 0.97478 0.97694 0.94214 1.21591 1.00230 0.94194 1.02386 1.22964 0.92747 1.02782 0.97485 1.22861 0.98234 1.00723 0.96067 1.22871 0.97694 0.99501 0.95107 1.23312 0.96992 1.01114 0.94430 1.22842 0.94900 1.02184 0.81087 1.49596 1.21780 1.62428 1.05384 1.19949 0.83875 0.77555 0.83378 1.90717 1.20124 1.41799 1.86099 1.23471 1.05420 1.04516 0.96078 1.85406 1.24167 1.79317 0.94505 1.22856 1.07129 1.46070 0.92289 0.90903 1.25000 0.95191 0.94848 0.98558 1.70017 1.16260 1.40578 1.23395 0.86155 0.79339 0.79000 0.80934 1.20251 1.20719 1.19680 1.22837 0.86481 0.97848 0.93918 0.92262 0.91184 0.91979 0.76481 0.91714 0.91170 0.91902 0.89582 0.90447 0.89887 0.90943 0.91029 0.88744 0.87094 0.90137 0.90473 0.89283 0.89286 0.92155 0.89839 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.47 37.16 0.35 -0.72 16 2 C 0.15 1.10 2.34 -67.94 -0.16 0.94 16 3 H 0.09 0.83 7.44 -51.93 -0.39 0.44 16 4 N -0.72 -4.77 4.84 -53.81 -0.26 -5.03 16 5 C 0.53 4.59 6.88 -10.98 -0.08 4.51 16 6 O -0.54 -6.75 15.57 5.56 0.09 -6.66 16 7 C -0.11 -0.70 1.25 -154.85 -0.19 -0.90 16 8 C -0.13 -0.54 8.98 37.16 0.33 -0.21 16 9 C -0.12 -0.69 7.21 -25.83 -0.19 -0.88 16 10 C -0.14 -0.72 7.74 -25.83 -0.20 -0.92 16 11 C -0.11 -0.76 6.99 -25.92 -0.18 -0.94 16 12 C -0.14 -1.05 3.48 -90.24 -0.31 -1.36 16 13 C 0.11 1.19 8.08 -8.51 -0.07 1.13 16 14 N -0.65 -9.25 3.69 -185.40 -0.68 -9.93 16 15 C 0.56 11.02 8.10 -10.99 -0.09 10.93 16 16 O -0.51 -12.16 16.64 5.56 0.09 -12.07 16 17 C -0.14 -3.00 5.98 36.00 0.22 -2.78 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 23 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.11 1.08 7.97 -8.65 -0.07 1.01 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.40 1.85 7.59 -40.82 -0.31 1.54 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.24 7.34 -51.93 -0.38 -0.14 16 34 H 0.06 0.21 7.11 -51.93 -0.37 -0.16 16 35 H 0.09 0.58 8.09 -51.92 -0.42 0.16 16 36 H 0.08 0.35 8.10 -51.92 -0.42 -0.07 16 37 H 0.08 0.33 7.64 -51.93 -0.40 -0.06 16 38 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.09 0.80 7.45 -51.93 -0.39 0.41 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 0.73 8.00 -51.93 -0.42 0.32 16 LS Contribution 407.39 15.07 6.14 6.14 Total: -1.00 -36.71 407.39 -9.66 -46.38 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -8.10 Total: -2.68 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.44 Total: -3.18 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.21 Total: -40.44 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.71 -9.66 -46.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701313673.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.272 kcal (2) G-P(sol) polarization free energy of solvation -36.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds