Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47123 * 2 1 4 4 C 1.46501 * 119.99977 * 275.00308 * 3 2 1 5 5 C 1.50707 * 109.46910 * 275.00301 * 4 3 2 6 6 H 1.08000 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99919 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00260 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00052 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00283 * 9 7 5 11 11 H 1.48506 * 109.47222 * 210.00398 * 9 7 5 12 12 H 1.48501 * 109.47244 * 330.00220 * 9 7 5 13 13 S 1.65591 * 120.00161 * 95.00175 * 3 2 1 14 14 O 1.42103 * 106.40018 * 336.45985 * 13 3 2 15 15 O 1.42100 * 106.40336 * 203.54008 * 13 3 2 16 16 N 1.65598 * 107.22078 * 89.99815 * 13 3 2 17 17 C 1.46504 * 119.99984 * 270.00340 * 16 13 3 18 18 C 1.46497 * 120.00086 * 89.99842 * 16 13 3 19 19 H 1.08999 * 109.47422 * 315.22427 * 18 16 13 20 20 C 1.53007 * 109.47082 * 75.21881 * 18 16 13 21 21 C 1.50694 * 109.47481 * 195.22160 * 18 16 13 22 22 C 1.38238 * 119.99790 * 298.55745 * 21 18 16 23 23 C 1.38239 * 119.99867 * 179.78707 * 22 21 18 24 24 C 1.38237 * 119.99680 * 0.44340 * 23 22 21 25 25 C 1.50703 * 119.99719 * 179.83357 * 24 23 22 26 26 C 1.38234 * 120.00175 * 359.80924 * 24 23 22 27 27 C 1.38224 * 119.99954 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.47009 * 300.00289 * 1 2 3 29 29 H 1.08997 * 109.47540 * 59.99948 * 1 2 3 30 30 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46701 * 240.00415 * 2 1 3 32 32 H 1.08994 * 109.47210 * 119.99652 * 2 1 3 33 33 H 1.09005 * 109.46990 * 34.99796 * 4 3 2 34 34 H 1.08997 * 109.47629 * 155.00205 * 4 3 2 35 35 H 0.96995 * 120.00254 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46754 * 264.35027 * 17 16 13 37 37 H 1.08994 * 109.47061 * 24.35126 * 17 16 13 38 38 H 1.09004 * 109.46804 * 144.35359 * 17 16 13 39 39 H 1.08996 * 109.46862 * 300.00090 * 20 18 16 40 40 H 1.09002 * 109.46876 * 60.00401 * 20 18 16 41 41 H 1.09003 * 109.47027 * 179.97438 * 20 18 16 42 42 H 1.07995 * 120.00056 * 0.02562 * 22 21 18 43 43 H 1.07992 * 119.99844 * 180.27901 * 23 22 21 44 44 H 1.08991 * 109.47452 * 269.98031 * 25 24 23 45 45 H 1.09004 * 109.47330 * 29.97924 * 25 24 23 46 46 H 1.08997 * 109.47193 * 149.97369 * 25 24 23 47 47 H 1.08005 * 119.99619 * 179.97438 * 26 24 23 48 48 H 1.08008 * 120.00135 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1723 1.1116 -1.3837 7 6 3.8528 2.3613 -3.0844 8 7 5.0194 2.0825 -3.6240 9 14 2.6812 3.5331 -3.9467 10 1 2.9449 4.9215 -3.4907 11 1 2.8862 3.4469 -5.4150 12 1 1.2808 3.1624 -3.6199 13 16 2.4122 2.1202 1.4286 14 8 1.6869 1.4415 2.4447 15 8 2.3057 3.5186 1.1997 16 7 4.0144 1.8137 1.7137 17 6 4.4090 0.6237 2.4717 18 6 5.0373 2.7324 1.2078 19 1 4.8069 3.0006 0.1767 20 6 5.0596 3.9959 2.0705 21 6 6.3860 2.0624 1.2631 22 6 6.9074 1.6578 2.4778 23 6 8.1426 1.0392 2.5281 24 6 8.8605 0.8336 1.3647 25 6 10.2088 0.1626 1.4200 26 6 8.3413 1.2429 0.1507 27 6 7.1042 1.8574 0.0999 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.3616 1.8097 -1.9453 34 1 2.0922 3.1803 -1.0757 35 1 5.2711 2.4850 -4.4698 36 1 4.5521 0.8909 3.5187 37 1 3.6281 -0.1325 2.3931 38 1 5.3405 0.2277 2.0672 39 1 4.0841 4.4804 2.0303 40 1 5.2901 3.7277 3.1015 41 1 5.8210 4.6792 1.6943 42 1 6.3480 1.8215 3.3869 43 1 8.5479 0.7191 3.4765 44 1 10.9849 0.9168 1.5493 45 1 10.2345 -0.5328 2.2590 46 1 10.3821 -0.3816 0.4917 47 1 8.9025 1.0826 -0.7581 48 1 6.6988 2.1776 -0.8486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336930799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -48.971319 kcal Electronic energy + Delta-G solvation = -29849.176029 eV Core-core repulsion = 26031.009991 eV Total energy + Delta-G solvation = -3818.166038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.58201 -36.83350 -36.46820 -36.15450 -35.26601 -32.67118 -32.43657 -30.71775 -30.28345 -30.24117 -27.14032 -26.63538 -25.62090 -22.93229 -22.47311 -22.24156 -21.51553 -20.18540 -18.25352 -17.26574 -16.94910 -16.68393 -16.33152 -15.56849 -15.14231 -14.96062 -14.43180 -14.18358 -14.07118 -13.87832 -13.53476 -13.39623 -13.11514 -12.96340 -12.76076 -12.64490 -12.47503 -12.26902 -12.13550 -12.01134 -11.94999 -11.81155 -11.59301 -11.45740 -11.40908 -11.20011 -11.13693 -11.06399 -10.98771 -10.54684 -10.48365 -10.46448 -10.23516 -10.11841 -9.59938 -8.68766 -8.66705 -8.54873 -8.23009 -8.07121 -6.19061 -4.18665 1.15980 1.62202 1.73776 3.24277 3.30997 3.35329 3.42509 4.01344 4.10907 4.33057 4.81562 4.95960 5.01790 5.11907 5.14425 5.25319 5.32176 5.38151 5.43622 5.61885 5.63070 5.67717 5.72243 5.72686 5.78041 5.84780 5.88134 5.98582 6.00431 6.05845 6.07514 6.17849 6.25217 6.34471 6.36401 6.49915 6.57673 6.59484 6.61405 6.75964 6.84628 6.90632 6.93949 7.08991 7.14404 7.33768 7.42234 7.54289 8.39225 8.85735 9.42490 10.92551 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.005580 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.060610 B = 5016.560081 C = 6589.684148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.539 4.539 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.786 3.214 14 O -0.995 6.995 15 O -0.978 6.978 16 N -0.998 5.998 17 C 0.092 3.908 18 C 0.192 3.808 19 H 0.110 0.890 20 C -0.174 4.174 21 C -0.086 4.086 22 C -0.103 4.103 23 C -0.135 4.135 24 C -0.092 4.092 25 C -0.111 4.111 26 C -0.121 4.121 27 C -0.083 4.083 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.120 0.880 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 -3.442 10.171 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.692 3.308 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.796 3.204 14 O -0.979 6.979 15 O -0.962 6.962 16 N -0.836 5.836 17 C -0.054 4.054 18 C 0.086 3.914 19 H 0.128 0.872 20 C -0.233 4.233 21 C -0.087 4.087 22 C -0.122 4.122 23 C -0.153 4.153 24 C -0.092 4.092 25 C -0.168 4.168 26 C -0.139 4.139 27 C -0.102 4.102 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.138 0.862 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.822 -2.902 10.561 11.600 hybrid contribution -0.194 0.283 -0.950 1.010 sum 3.628 -2.619 9.611 10.602 Atomic orbital electron populations 1.22217 0.96930 1.01568 1.02247 1.21012 0.93525 0.82687 1.02476 1.57591 1.78702 1.22976 1.23478 1.19592 0.98285 0.92082 0.81125 1.21463 1.00935 1.29076 1.06362 0.89853 1.24811 0.94923 0.95959 0.96771 1.69870 1.20405 1.43719 1.18884 0.87013 0.82330 0.82327 0.79141 1.19736 1.21134 1.18912 1.01789 0.72476 0.73373 0.72787 1.93539 1.70529 1.76440 1.57385 1.93536 1.85936 1.30743 1.85986 1.57940 1.24599 1.33524 1.67570 1.21602 1.02117 0.86659 0.95045 1.19829 0.84378 0.87482 0.99676 0.87211 1.22461 1.03975 0.97405 0.99462 1.19789 0.95695 0.99851 0.93358 1.21048 0.95314 0.98348 0.97476 1.20863 0.95215 1.01772 0.97424 1.19888 0.96517 0.99283 0.93498 1.20754 0.93889 0.99748 1.02411 1.21039 0.96254 0.99579 0.97031 1.21445 0.93773 0.96066 0.98882 0.92614 0.92268 0.92132 0.89940 0.91776 0.94662 0.94018 0.92545 0.93240 0.91748 0.90445 0.90087 0.92849 0.91527 0.86200 0.86686 0.91587 0.91966 0.91712 0.86223 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.21 6.06 -4.04 -0.02 2.19 16 3 N -0.99 -19.72 2.82 -115.66 -0.33 -20.05 16 4 C 0.21 4.82 4.50 -5.19 -0.02 4.80 16 5 C -0.54 -13.55 9.18 -34.44 -0.32 -13.87 16 6 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -24.46 13.96 55.43 0.77 -23.68 16 9 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 13 S 2.79 54.95 5.98 -107.50 -0.64 54.31 16 14 O -0.99 -20.08 16.07 -57.17 -0.92 -21.00 16 15 O -0.98 -21.46 13.99 -57.17 -0.80 -22.26 16 16 N -1.00 -17.40 3.27 -115.85 -0.38 -17.78 16 17 C 0.09 1.34 8.68 59.85 0.52 1.86 16 18 C 0.19 3.38 2.81 -69.08 -0.19 3.19 16 19 H 0.11 2.26 7.10 -51.93 -0.37 1.89 16 20 C -0.17 -2.78 9.13 37.16 0.34 -2.45 16 21 C -0.09 -1.39 3.96 -104.63 -0.41 -1.80 16 22 C -0.10 -1.43 6.55 -39.58 -0.26 -1.69 16 23 C -0.13 -1.70 9.70 -39.58 -0.38 -2.09 16 24 C -0.09 -1.20 5.88 -104.62 -0.62 -1.82 16 25 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 26 C -0.12 -1.82 9.70 -39.59 -0.38 -2.21 16 27 C -0.08 -1.43 9.67 -39.59 -0.38 -1.82 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 32 H 0.06 0.99 7.33 -51.93 -0.38 0.61 16 33 H 0.04 0.79 7.17 -51.93 -0.37 0.42 16 34 H 0.04 0.99 6.34 -51.93 -0.33 0.66 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.05 0.63 7.34 -51.93 -0.38 0.25 16 37 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 38 H 0.08 1.12 5.42 -51.93 -0.28 0.84 16 39 H 0.08 1.42 6.13 -51.93 -0.32 1.10 16 40 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.12 1.49 6.19 -52.49 -0.33 1.16 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 46 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 47 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 48 H 0.14 2.84 7.95 -52.48 -0.42 2.42 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -29.23 388.92 -10.34 -39.57 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.74 Total: 6.20 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.50 Total: -16.69 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.07 Total: -61.51 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -1.72 Total: -43.26 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 16 Polarization: 54.95 SS G_CDS: -0.64 Total: 54.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.23 -10.34 -39.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336930799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.399 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds