Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47123 * 2 1 4 4 C 1.46501 * 119.99977 * 275.00308 * 3 2 1 5 5 C 1.50707 * 109.46910 * 275.00301 * 4 3 2 6 6 H 1.08000 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99919 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00260 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00052 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00283 * 9 7 5 11 11 H 1.48506 * 109.47222 * 210.00398 * 9 7 5 12 12 H 1.48501 * 109.47244 * 330.00220 * 9 7 5 13 13 S 1.65591 * 120.00161 * 95.00175 * 3 2 1 14 14 O 1.42103 * 106.40018 * 336.45985 * 13 3 2 15 15 O 1.42100 * 106.40336 * 203.54008 * 13 3 2 16 16 N 1.65598 * 107.22078 * 89.99815 * 13 3 2 17 17 C 1.46504 * 119.99984 * 270.00340 * 16 13 3 18 18 C 1.46497 * 120.00086 * 89.99842 * 16 13 3 19 19 H 1.08999 * 109.47422 * 315.22427 * 18 16 13 20 20 C 1.53007 * 109.47082 * 75.21881 * 18 16 13 21 21 C 1.50694 * 109.47481 * 195.22160 * 18 16 13 22 22 C 1.38238 * 119.99790 * 298.55745 * 21 18 16 23 23 C 1.38239 * 119.99867 * 179.78707 * 22 21 18 24 24 C 1.38237 * 119.99680 * 0.44340 * 23 22 21 25 25 C 1.50703 * 119.99719 * 179.83357 * 24 23 22 26 26 C 1.38234 * 120.00175 * 359.80924 * 24 23 22 27 27 C 1.38224 * 119.99954 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.47009 * 300.00289 * 1 2 3 29 29 H 1.08997 * 109.47540 * 59.99948 * 1 2 3 30 30 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46701 * 240.00415 * 2 1 3 32 32 H 1.08994 * 109.47210 * 119.99652 * 2 1 3 33 33 H 1.09005 * 109.46990 * 34.99796 * 4 3 2 34 34 H 1.08997 * 109.47629 * 155.00205 * 4 3 2 35 35 H 0.96995 * 120.00254 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46754 * 264.35027 * 17 16 13 37 37 H 1.08994 * 109.47061 * 24.35126 * 17 16 13 38 38 H 1.09004 * 109.46804 * 144.35359 * 17 16 13 39 39 H 1.08996 * 109.46862 * 300.00090 * 20 18 16 40 40 H 1.09002 * 109.46876 * 60.00401 * 20 18 16 41 41 H 1.09003 * 109.47027 * 179.97438 * 20 18 16 42 42 H 1.07995 * 120.00056 * 0.02562 * 22 21 18 43 43 H 1.07992 * 119.99844 * 180.27901 * 23 22 21 44 44 H 1.08991 * 109.47452 * 269.98031 * 25 24 23 45 45 H 1.09004 * 109.47330 * 29.97924 * 25 24 23 46 46 H 1.08997 * 109.47193 * 149.97369 * 25 24 23 47 47 H 1.08005 * 119.99619 * 179.97438 * 26 24 23 48 48 H 1.08008 * 120.00135 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1723 1.1116 -1.3837 7 6 3.8528 2.3613 -3.0844 8 7 5.0194 2.0825 -3.6240 9 14 2.6812 3.5331 -3.9467 10 1 2.9449 4.9215 -3.4907 11 1 2.8862 3.4469 -5.4150 12 1 1.2808 3.1624 -3.6199 13 16 2.4122 2.1202 1.4286 14 8 1.6869 1.4415 2.4447 15 8 2.3057 3.5186 1.1997 16 7 4.0144 1.8137 1.7137 17 6 4.4090 0.6237 2.4717 18 6 5.0373 2.7324 1.2078 19 1 4.8069 3.0006 0.1767 20 6 5.0596 3.9959 2.0705 21 6 6.3860 2.0624 1.2631 22 6 6.9074 1.6578 2.4778 23 6 8.1426 1.0392 2.5281 24 6 8.8605 0.8336 1.3647 25 6 10.2088 0.1626 1.4200 26 6 8.3413 1.2429 0.1507 27 6 7.1042 1.8574 0.0999 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.3616 1.8097 -1.9453 34 1 2.0922 3.1803 -1.0757 35 1 5.2711 2.4850 -4.4698 36 1 4.5521 0.8909 3.5187 37 1 3.6281 -0.1325 2.3931 38 1 5.3405 0.2277 2.0672 39 1 4.0841 4.4804 2.0303 40 1 5.2901 3.7277 3.1015 41 1 5.8210 4.6792 1.6943 42 1 6.3480 1.8215 3.3869 43 1 8.5479 0.7191 3.4765 44 1 10.9849 0.9168 1.5493 45 1 10.2345 -0.5328 2.2590 46 1 10.3821 -0.3816 0.4917 47 1 8.9025 1.0826 -0.7581 48 1 6.6988 2.1776 -0.8486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336930799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = -66.147041 kcal Electronic energy + Delta-G solvation = -29849.920824 eV Core-core repulsion = 26031.009991 eV Total energy + Delta-G solvation = -3818.910833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77151 -38.42855 -37.78827 -37.72327 -36.90105 -34.63671 -33.59029 -31.87429 -31.80205 -31.50960 -28.91206 -27.67286 -26.88033 -24.59818 -23.66312 -23.44738 -23.13505 -21.40436 -19.79240 -19.07529 -18.52934 -18.37889 -17.70207 -16.96974 -16.51389 -16.14138 -16.09802 -15.64343 -15.50515 -15.16544 -14.78441 -14.57391 -14.44693 -14.37105 -14.18277 -14.04882 -13.93409 -13.69739 -13.58704 -13.47440 -13.22105 -13.10450 -13.06362 -12.84463 -12.77233 -12.65316 -12.60703 -12.44235 -12.33229 -12.23443 -12.11075 -11.77719 -11.69673 -11.55481 -11.47822 -10.73098 -10.05836 -9.76515 -9.70182 -9.32820 -8.24607 -6.26941 -0.36746 0.44924 0.57607 1.35405 1.39723 1.45609 1.92209 2.35558 2.50186 2.91127 3.09259 3.33081 3.62488 3.87222 3.94155 4.06334 4.15073 4.22006 4.31245 4.36923 4.37525 4.42059 4.58730 4.60568 4.65273 4.70006 4.76701 4.81330 4.89614 4.90861 4.93937 4.94310 4.97352 5.01876 5.03189 5.16131 5.26914 5.30525 5.35250 5.37463 5.42588 5.49922 5.54582 5.63171 5.77818 5.82969 5.90446 6.19010 6.35417 6.77020 7.35894 8.89208 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.005580 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.060610 B = 5016.560081 C = 6589.684148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.994 5.994 4 C 0.221 3.779 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.927 5.927 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.247 1.247 13 S 2.792 3.208 14 O -0.997 6.997 15 O -1.004 7.004 16 N -0.996 5.996 17 C 0.083 3.917 18 C 0.193 3.807 19 H 0.066 0.934 20 C -0.170 4.170 21 C -0.096 4.096 22 C -0.097 4.097 23 C -0.125 4.125 24 C -0.087 4.087 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.110 4.110 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.153 0.847 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.119 0.881 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -4.595 12.638 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.834 5.834 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.169 4.169 8 N -0.567 5.567 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.171 1.171 13 S 2.802 3.198 14 O -0.981 6.981 15 O -0.989 6.989 16 N -0.836 5.836 17 C -0.061 4.061 18 C 0.088 3.912 19 H 0.084 0.916 20 C -0.228 4.228 21 C -0.097 4.097 22 C -0.115 4.115 23 C -0.143 4.143 24 C -0.087 4.087 25 C -0.166 4.166 26 C -0.152 4.152 27 C -0.129 4.129 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.159 0.841 43 H 0.171 0.829 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.137 0.863 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.156 -4.077 13.041 14.281 hybrid contribution -0.205 0.558 -1.655 1.759 sum 3.951 -3.520 11.385 12.555 Atomic orbital electron populations 1.22194 0.95196 1.03479 1.01698 1.21274 0.95038 0.81184 1.03086 1.57601 1.79265 1.24093 1.22402 1.19324 0.96828 0.91848 0.82342 1.21524 1.01475 1.27739 1.05870 0.92632 1.25474 0.96200 0.97528 0.97714 1.69992 1.22045 1.45228 1.19388 0.86225 0.81456 0.80286 0.78223 1.19973 1.20730 1.17103 1.01476 0.72928 0.72739 0.72611 1.93527 1.71038 1.76310 1.57217 1.93499 1.86576 1.32511 1.86289 1.57794 1.23627 1.34469 1.67698 1.21859 1.02410 0.85745 0.96135 1.19666 0.85294 0.88539 0.97734 0.91634 1.22411 1.03211 0.96549 1.00655 1.19640 0.94948 1.01019 0.94101 1.21230 0.95927 0.97579 0.96794 1.21283 0.94255 1.00052 0.98678 1.20260 0.97796 0.98042 0.92578 1.20819 0.92051 1.00282 1.03466 1.21117 0.95575 0.99997 0.98489 1.21167 0.95479 0.98549 0.97657 0.93232 0.92698 0.89027 0.90417 0.90121 0.93903 0.95073 0.92637 0.90431 0.91185 0.90229 0.91902 0.90202 0.90833 0.84060 0.82944 0.90180 0.89807 0.91622 0.86258 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.80 10.24 71.98 0.74 -4.06 16 2 C 0.12 3.99 6.06 86.38 0.52 4.52 16 3 N -0.99 -40.03 2.82 -519.83 -1.47 -41.50 16 4 C 0.22 10.24 4.50 85.64 0.39 10.62 16 5 C -0.53 -27.67 9.18 25.60 0.23 -27.43 16 6 H 0.06 3.18 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.67 5.47 84.65 0.46 2.13 16 8 N -0.93 -53.47 13.96 21.45 0.30 -53.17 16 9 Si 0.91 42.28 27.47 68.60 1.88 44.17 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 13 S 2.79 110.35 5.98 -56.49 -0.34 110.01 16 14 O -1.00 -39.05 16.07 -128.00 -2.06 -41.10 16 15 O -1.00 -45.05 13.99 -128.00 -1.79 -46.84 16 16 N -1.00 -34.65 3.27 -520.44 -1.70 -36.35 16 17 C 0.08 2.29 8.68 127.77 1.11 3.40 16 18 C 0.19 7.04 2.81 44.25 0.12 7.17 16 19 H 0.07 2.95 7.10 -2.39 -0.02 2.93 16 20 C -0.17 -5.43 9.13 71.98 0.66 -4.77 16 21 C -0.10 -3.14 3.96 -19.87 -0.08 -3.22 16 22 C -0.10 -2.44 6.55 22.27 0.15 -2.30 16 23 C -0.13 -2.71 9.70 22.27 0.22 -2.50 16 24 C -0.09 -2.08 5.88 -19.86 -0.12 -2.20 16 25 C -0.11 -1.84 10.01 71.24 0.71 -1.12 16 26 C -0.13 -4.13 9.70 22.27 0.22 -3.91 16 27 C -0.11 -4.05 9.67 22.27 0.22 -3.83 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 32 H 0.08 2.40 7.33 -2.39 -0.02 2.38 16 33 H 0.04 1.92 7.17 -2.38 -0.02 1.90 16 34 H 0.03 1.52 6.34 -2.39 -0.02 1.50 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.08 1.71 7.34 -2.39 -0.02 1.70 16 37 H 0.07 1.84 7.31 -2.39 -0.02 1.82 16 38 H 0.08 2.17 5.42 -2.38 -0.01 2.16 16 39 H 0.06 2.24 6.13 -2.39 -0.01 2.22 16 40 H 0.08 2.08 7.31 -2.39 -0.02 2.07 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.14 2.94 6.19 -2.91 -0.02 2.92 16 43 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.08 8.09 -2.38 -0.02 1.06 16 46 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 47 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 48 H 0.10 4.36 7.95 -2.91 -0.02 4.34 16 Total: -1.00 -65.93 388.92 1.26 -64.67 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.88 Total: 27.62 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 5.55 Total: -27.50 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -2.87 Total: -131.03 kcal Atomic # 8 Polarization: -84.10 SS G_CDS: -3.85 Total: -87.95 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.17 kcal Atomic # 16 Polarization: 110.35 SS G_CDS: -0.34 Total: 110.01 kcal Total: -65.93 1.26 -64.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336930799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.472 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds