Wall clock time and date at job start Sat Apr 11 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.46499 * 119.99939 * 274.99984 * 3 2 1 5 5 C 1.50706 * 109.47148 * 275.00031 * 4 3 2 6 6 H 1.07999 * 120.00009 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99768 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00637 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99809 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47048 * 89.99592 * 9 7 5 11 11 H 1.48497 * 109.47332 * 209.99648 * 9 7 5 12 12 H 1.48498 * 109.47133 * 329.99775 * 9 7 5 13 13 S 1.65599 * 120.00104 * 94.99702 * 3 2 1 14 14 O 1.42103 * 106.40334 * 336.46408 * 13 3 2 15 15 O 1.42105 * 106.40137 * 203.54077 * 13 3 2 16 16 N 1.65603 * 107.21620 * 89.99964 * 13 3 2 17 17 C 1.46493 * 120.00470 * 270.00086 * 16 13 3 18 18 C 1.46509 * 119.99421 * 90.00214 * 16 13 3 19 19 C 1.52997 * 109.47027 * 95.00202 * 18 16 13 20 20 C 1.52995 * 109.47085 * 179.97438 * 19 18 16 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.09006 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47029 * 300.00205 * 1 2 3 29 29 H 1.09003 * 109.46898 * 60.00231 * 1 2 3 30 30 H 1.09003 * 109.47648 * 239.99796 * 2 1 3 31 31 H 1.08997 * 109.47351 * 119.99734 * 2 1 3 32 32 H 1.08998 * 109.47093 * 34.99829 * 4 3 2 33 33 H 1.08995 * 109.47253 * 154.99950 * 4 3 2 34 34 H 0.96993 * 120.00481 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47214 * 270.00318 * 17 16 13 36 36 H 1.09003 * 109.47119 * 29.99699 * 17 16 13 37 37 H 1.09000 * 109.47325 * 150.00245 * 17 16 13 38 38 H 1.08992 * 109.47597 * 334.99908 * 18 16 13 39 39 H 1.08999 * 109.46361 * 214.99610 * 18 16 13 40 40 H 1.08995 * 109.47671 * 59.99445 * 19 18 16 41 41 H 1.09004 * 109.46984 * 299.99461 * 19 18 16 42 42 H 1.09005 * 109.47610 * 59.99944 * 20 19 18 43 43 H 1.09000 * 109.47256 * 299.99285 * 20 19 18 44 44 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 45 45 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 47 47 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 48 48 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1116 -1.3836 7 6 3.8530 2.3613 -3.0844 8 7 3.0281 3.1862 -3.6916 9 14 5.5100 1.9653 -3.8506 10 1 5.3749 0.7823 -4.7381 11 1 5.9789 3.1290 -4.6449 12 1 6.4934 1.6695 -2.7779 13 16 2.4122 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1997 16 7 4.0144 1.8136 1.7137 17 6 4.4090 0.6238 2.4718 18 6 5.0372 2.7325 1.2078 19 6 5.4100 3.7336 2.3030 20 6 6.4786 4.6928 1.7749 21 6 6.8454 5.6794 2.8535 22 6 7.8703 5.3904 3.7350 23 6 8.2071 6.2956 4.7240 24 6 7.5194 7.4900 4.8311 25 6 6.4911 7.7766 3.9530 26 6 6.1573 6.8734 2.9611 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 3.2803 3.5893 -4.5370 35 1 4.4546 0.8677 3.5332 36 1 3.6771 -0.1680 2.3121 37 1 5.3889 0.2863 2.1341 38 1 4.6480 3.2688 0.3425 39 1 5.9220 2.1663 0.9166 40 1 5.7993 3.1974 3.1684 41 1 4.5252 4.2997 2.5943 42 1 6.0897 5.2292 0.9094 43 1 7.3634 4.1265 1.4840 44 1 8.4079 4.4574 3.6510 45 1 9.0075 6.0697 5.4130 46 1 7.7829 8.1973 5.6036 47 1 5.9509 8.7078 4.0394 48 1 5.3571 7.0995 2.2719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336950107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:51 Heat of formation + Delta-G solvation = -65.559162 kcal Electronic energy + Delta-G solvation = -28502.381942 eV Core-core repulsion = 24683.496601 eV Total energy + Delta-G solvation = -3818.885341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.32055 -36.77432 -36.52018 -36.00688 -35.16708 -33.79720 -32.72881 -30.90555 -30.18658 -29.94219 -26.81298 -26.59303 -24.58404 -23.13439 -22.58515 -21.91756 -21.64606 -20.69931 -18.32392 -17.10894 -16.91008 -16.77500 -16.30374 -15.87222 -15.39267 -15.17744 -14.87920 -14.31582 -14.15041 -13.94164 -13.76057 -13.39720 -13.29817 -13.14291 -12.95114 -12.88625 -12.49952 -12.12587 -12.04191 -11.95173 -11.77288 -11.69098 -11.54172 -11.35183 -11.32089 -11.09118 -11.06504 -10.96655 -10.95645 -10.82182 -10.50547 -10.43172 -10.29763 -10.04028 -9.77874 -8.94671 -8.84739 -8.56939 -8.49926 -8.03983 -6.12855 -4.19631 1.26665 1.35741 1.37625 3.22370 3.30129 3.31008 3.49295 3.76741 4.12867 4.34093 4.76301 4.82757 4.93884 4.98416 5.06695 5.09510 5.20373 5.24709 5.41264 5.44365 5.52203 5.53834 5.56110 5.70176 5.72035 5.76410 5.81046 5.92231 5.94397 5.99934 6.02651 6.09572 6.14305 6.18487 6.32215 6.43549 6.46784 6.48172 6.57601 6.65522 6.67478 6.71099 6.95684 7.00435 7.35561 7.45105 7.65900 7.84589 8.14293 8.85745 9.46430 10.94993 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.003869 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.008399 B = 7235.771870 C = 8838.817226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.993 5.993 4 C 0.245 3.755 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.783 3.217 14 O -0.999 6.999 15 O -0.975 6.975 16 N -1.007 6.007 17 C 0.101 3.899 18 C 0.128 3.872 19 C -0.131 4.131 20 C -0.083 4.083 21 C -0.072 4.072 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.119 4.119 26 C -0.116 4.116 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 0.288 12.921 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.834 5.834 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.792 3.208 14 O -0.983 6.983 15 O -0.959 6.959 16 N -0.845 5.845 17 C -0.045 4.045 18 C 0.002 3.998 19 C -0.171 4.171 20 C -0.121 4.121 21 C -0.072 4.072 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.137 4.137 26 C -0.134 4.134 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.563 0.895 13.298 14.856 hybrid contribution 1.241 -0.453 -0.810 1.549 sum 7.804 0.442 12.488 14.733 Atomic orbital electron populations 1.22209 0.96943 1.01384 1.02397 1.20978 0.93677 0.83016 1.01961 1.57797 1.78445 1.22867 1.24288 1.19191 0.97302 0.92214 0.79027 1.21556 1.02227 1.27983 1.06069 0.91931 1.24945 0.97155 0.94829 0.96865 1.69929 1.35969 1.29738 1.17037 0.86609 0.84067 0.77949 0.79440 1.20686 1.21120 1.19753 1.01900 0.72589 0.73472 0.72849 1.93527 1.70593 1.76487 1.57695 1.93569 1.85731 1.30699 1.85927 1.57897 1.25478 1.33340 1.67767 1.21332 1.01313 0.86576 0.95318 1.21305 0.91801 0.90369 0.96283 1.22021 0.98850 0.97114 0.99092 1.20601 0.99263 0.95854 0.96389 1.19995 0.95306 0.95168 0.96767 1.21067 0.97741 0.99482 0.95511 1.21106 0.99964 0.94460 0.98489 1.21100 0.96879 0.97349 0.99619 1.21159 0.97560 0.99491 0.95513 1.21200 0.99725 0.93812 0.98654 0.92343 0.92669 0.92056 0.90244 0.92124 0.94475 0.93191 0.92591 0.93265 0.91750 0.91452 0.88340 0.90893 0.91968 0.91173 0.90061 0.90792 0.86194 0.86400 0.86475 0.86209 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.26 6.06 -4.04 -0.02 2.24 16 3 N -0.99 -20.40 2.82 -115.66 -0.33 -20.73 16 4 C 0.24 5.96 5.44 -5.19 -0.03 5.93 16 5 C -0.54 -13.62 9.38 -34.44 -0.32 -13.95 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.80 13.29 55.43 0.74 -24.07 16 9 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 S 2.78 56.04 5.97 -107.50 -0.64 55.40 16 14 O -1.00 -20.64 16.18 -57.17 -0.93 -21.57 16 15 O -0.98 -22.47 15.66 -57.17 -0.90 -23.36 16 16 N -1.01 -16.94 3.24 -121.76 -0.39 -17.34 16 17 C 0.10 1.34 10.33 59.84 0.62 1.96 16 18 C 0.13 2.08 5.37 -4.04 -0.02 2.05 16 19 C -0.13 -1.88 5.52 -26.74 -0.15 -2.03 16 20 C -0.08 -1.07 5.34 -27.88 -0.15 -1.22 16 21 C -0.07 -0.91 5.13 -104.62 -0.54 -1.45 16 22 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 24 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 31 H 0.06 0.94 7.26 -51.93 -0.38 0.56 16 32 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.83 7.44 -51.93 -0.39 0.44 16 37 H 0.07 0.76 7.94 -51.93 -0.41 0.34 16 38 H 0.10 1.88 7.61 -51.93 -0.40 1.48 16 39 H 0.07 1.05 7.96 -51.93 -0.41 0.64 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 43 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 44 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 48 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 408.62 15.07 6.16 6.16 Total: -1.00 -30.97 408.62 -11.82 -42.80 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.22 Total: 3.55 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.29 Total: -15.91 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.01 Total: -62.13 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -1.82 Total: -44.93 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 56.04 SS G_CDS: -0.64 Total: 55.40 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.97 -11.82 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336950107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.764 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds