Wall clock time and date at job start Sat Apr 11 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.46499 * 119.99939 * 274.99984 * 3 2 1 5 5 C 1.50706 * 109.47148 * 275.00031 * 4 3 2 6 6 H 1.07999 * 120.00009 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99768 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00637 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99809 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47048 * 89.99592 * 9 7 5 11 11 H 1.48497 * 109.47332 * 209.99648 * 9 7 5 12 12 H 1.48498 * 109.47133 * 329.99775 * 9 7 5 13 13 S 1.65599 * 120.00104 * 94.99702 * 3 2 1 14 14 O 1.42103 * 106.40334 * 336.46408 * 13 3 2 15 15 O 1.42105 * 106.40137 * 203.54077 * 13 3 2 16 16 N 1.65603 * 107.21620 * 89.99964 * 13 3 2 17 17 C 1.46493 * 120.00470 * 270.00086 * 16 13 3 18 18 C 1.46509 * 119.99421 * 90.00214 * 16 13 3 19 19 C 1.52997 * 109.47027 * 95.00202 * 18 16 13 20 20 C 1.52995 * 109.47085 * 179.97438 * 19 18 16 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.09006 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47029 * 300.00205 * 1 2 3 29 29 H 1.09003 * 109.46898 * 60.00231 * 1 2 3 30 30 H 1.09003 * 109.47648 * 239.99796 * 2 1 3 31 31 H 1.08997 * 109.47351 * 119.99734 * 2 1 3 32 32 H 1.08998 * 109.47093 * 34.99829 * 4 3 2 33 33 H 1.08995 * 109.47253 * 154.99950 * 4 3 2 34 34 H 0.96993 * 120.00481 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47214 * 270.00318 * 17 16 13 36 36 H 1.09003 * 109.47119 * 29.99699 * 17 16 13 37 37 H 1.09000 * 109.47325 * 150.00245 * 17 16 13 38 38 H 1.08992 * 109.47597 * 334.99908 * 18 16 13 39 39 H 1.08999 * 109.46361 * 214.99610 * 18 16 13 40 40 H 1.08995 * 109.47671 * 59.99445 * 19 18 16 41 41 H 1.09004 * 109.46984 * 299.99461 * 19 18 16 42 42 H 1.09005 * 109.47610 * 59.99944 * 20 19 18 43 43 H 1.09000 * 109.47256 * 299.99285 * 20 19 18 44 44 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 45 45 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 47 47 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 48 48 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1116 -1.3836 7 6 3.8530 2.3613 -3.0844 8 7 3.0281 3.1862 -3.6916 9 14 5.5100 1.9653 -3.8506 10 1 5.3749 0.7823 -4.7381 11 1 5.9789 3.1290 -4.6449 12 1 6.4934 1.6695 -2.7779 13 16 2.4122 2.1202 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1997 16 7 4.0144 1.8136 1.7137 17 6 4.4090 0.6238 2.4718 18 6 5.0372 2.7325 1.2078 19 6 5.4100 3.7336 2.3030 20 6 6.4786 4.6928 1.7749 21 6 6.8454 5.6794 2.8535 22 6 7.8703 5.3904 3.7350 23 6 8.2071 6.2956 4.7240 24 6 7.5194 7.4900 4.8311 25 6 6.4911 7.7766 3.9530 26 6 6.1573 6.8734 2.9611 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 3.2803 3.5893 -4.5370 35 1 4.4546 0.8677 3.5332 36 1 3.6771 -0.1680 2.3121 37 1 5.3889 0.2863 2.1341 38 1 4.6480 3.2688 0.3425 39 1 5.9220 2.1663 0.9166 40 1 5.7993 3.1974 3.1684 41 1 4.5252 4.2997 2.5943 42 1 6.0897 5.2292 0.9094 43 1 7.3634 4.1265 1.4840 44 1 8.4079 4.4574 3.6510 45 1 9.0075 6.0697 5.4130 46 1 7.7829 8.1973 5.6036 47 1 5.9509 8.7078 4.0394 48 1 5.3571 7.0995 2.2719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336950107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:51 Heat of formation + Delta-G solvation = -82.968783 kcal Electronic energy + Delta-G solvation = -28503.136880 eV Core-core repulsion = 24683.496601 eV Total energy + Delta-G solvation = -3819.640279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.18740 -38.39217 -37.81948 -37.65341 -36.86386 -34.84536 -34.66856 -31.73991 -31.53758 -31.20715 -28.48116 -27.85557 -25.73074 -24.91642 -23.42738 -23.24696 -23.04311 -21.67471 -19.85752 -18.70250 -18.55250 -18.18200 -17.69337 -17.31686 -16.65562 -16.33996 -16.07489 -15.80470 -15.37678 -15.20280 -15.09732 -14.76110 -14.60547 -14.22974 -14.12008 -13.88611 -13.81513 -13.75897 -13.59389 -13.38233 -13.25358 -13.07637 -13.00438 -12.71289 -12.69505 -12.67454 -12.58210 -12.35782 -12.24784 -12.10911 -11.89060 -11.78559 -11.70317 -11.58929 -11.47478 -10.55966 -10.05026 -9.79777 -9.75616 -9.51746 -8.13808 -6.27755 -0.30366 0.47846 0.52336 1.45577 1.46374 1.56449 1.99289 2.44764 2.56155 2.90717 3.18040 3.39414 3.76950 3.82848 3.93831 4.02229 4.17969 4.21063 4.30154 4.40484 4.40789 4.45417 4.48485 4.52586 4.66591 4.67084 4.72110 4.75451 4.77954 4.92064 4.95378 4.99151 5.02007 5.13095 5.18420 5.18500 5.26185 5.28887 5.37257 5.39476 5.52835 5.60553 5.64481 5.69538 5.78949 5.79232 6.01613 6.13306 6.16492 6.84522 7.42559 8.94427 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.003869 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.008399 B = 7235.771870 C = 8838.817226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.998 5.998 4 C 0.262 3.738 5 C -0.536 4.536 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.254 1.254 13 S 2.790 3.210 14 O -1.005 7.005 15 O -1.014 7.014 16 N -1.004 6.004 17 C 0.089 3.911 18 C 0.127 3.873 19 C -0.122 4.122 20 C -0.079 4.079 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.142 4.142 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.139 0.861 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.134 0.866 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.946 -1.543 14.651 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.839 5.839 4 C 0.138 3.862 5 C -0.576 4.576 6 H 0.092 0.908 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.178 1.178 13 S 2.800 3.200 14 O -0.988 6.988 15 O -0.998 6.998 16 N -0.845 5.845 17 C -0.055 4.055 18 C 0.001 3.999 19 C -0.161 4.161 20 C -0.117 4.117 21 C -0.090 4.090 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.160 4.160 27 H 0.111 0.889 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.157 0.843 45 H 0.164 0.836 46 H 0.161 0.839 47 H 0.152 0.848 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.330 -0.967 15.056 17.738 hybrid contribution 0.352 0.117 -1.255 1.309 sum 9.682 -0.850 13.801 16.879 Atomic orbital electron populations 1.22203 0.96031 1.03309 1.01212 1.21272 0.94607 0.81365 1.03244 1.57727 1.79287 1.24024 1.22828 1.18709 0.96688 0.90634 0.80179 1.21803 1.02388 1.27477 1.05898 0.90792 1.25805 1.00754 0.94639 0.97532 1.70073 1.38140 1.31213 1.17558 0.85569 0.79952 0.77467 0.78831 1.20176 1.21565 1.17762 1.01478 0.73461 0.72520 0.72581 1.93507 1.71464 1.76320 1.57556 1.93518 1.86660 1.33293 1.86341 1.57661 1.24068 1.34747 1.67976 1.21675 1.02913 0.85121 0.95810 1.21357 0.91992 0.90769 0.95736 1.21918 0.98274 0.96774 0.99172 1.20546 0.99384 0.95785 0.95986 1.20034 0.96379 0.95129 0.97431 1.21322 0.97235 1.00531 0.95241 1.21490 1.00276 0.94008 0.98379 1.21468 0.96075 0.97953 0.99632 1.21404 0.98171 0.99808 0.95311 1.21307 1.00210 0.94923 0.99573 0.88864 0.93613 0.93470 0.90022 0.89637 0.96447 0.96774 0.92690 0.91768 0.91265 0.88611 0.92058 0.88252 0.89829 0.93971 0.91962 0.88775 0.84301 0.83636 0.83900 0.84819 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 10.24 71.98 0.74 -4.52 16 2 C 0.12 4.07 6.06 86.38 0.52 4.60 16 3 N -1.00 -41.60 2.82 -519.85 -1.47 -43.07 16 4 C 0.26 13.26 5.44 85.64 0.47 13.72 16 5 C -0.54 -27.39 9.38 25.60 0.24 -27.15 16 6 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -53.54 13.29 21.45 0.28 -53.26 16 9 Si 0.96 40.91 29.54 68.60 2.03 42.93 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 13 S 2.79 113.90 5.97 -56.49 -0.34 113.56 16 14 O -1.00 -41.04 16.18 -128.00 -2.07 -43.11 16 15 O -1.01 -49.29 15.66 -128.00 -2.00 -51.29 16 16 N -1.00 -32.71 3.24 -539.13 -1.75 -34.46 16 17 C 0.09 2.11 10.33 127.77 1.32 3.43 16 18 C 0.13 4.04 5.37 86.38 0.46 4.50 16 19 C -0.12 -3.46 5.52 30.59 0.17 -3.29 16 20 C -0.08 -2.03 5.34 29.85 0.16 -1.87 16 21 C -0.09 -2.23 5.13 -19.86 -0.10 -2.33 16 22 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 23 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 24 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 25 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 26 C -0.14 -3.70 9.70 22.27 0.22 -3.48 16 27 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 31 H 0.09 2.46 7.26 -2.39 -0.02 2.44 16 32 H 0.02 0.94 8.11 -2.39 -0.02 0.92 16 33 H 0.01 0.82 6.91 -2.39 -0.02 0.80 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 35 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.07 1.58 7.44 -2.39 -0.02 1.56 16 37 H 0.10 1.75 7.94 -2.39 -0.02 1.73 16 38 H 0.06 2.42 7.61 -2.39 -0.02 2.41 16 39 H 0.10 2.61 7.96 -2.39 -0.02 2.59 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.06 1.79 8.09 -2.38 -0.02 1.77 16 43 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 44 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 48 H 0.11 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -69.06 408.62 1.13 -67.93 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.91 Total: 25.22 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 5.54 Total: -24.45 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -2.93 Total: -130.79 kcal Atomic # 8 Polarization: -90.33 SS G_CDS: -4.08 Total: -94.41 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 113.90 SS G_CDS: -0.34 Total: 113.56 kcal Total: -69.06 1.13 -67.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336950107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.036 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds