Wall clock time and date at job start Sat Apr 11 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46456 * 2 1 4 4 C 1.46499 * 120.00313 * 275.00098 * 3 2 1 5 5 C 1.50706 * 109.46940 * 293.47235 * 4 3 2 6 6 H 1.07998 * 119.99958 * 4.53025 * 5 4 3 7 7 C 1.37871 * 119.99910 * 184.52556 * 5 4 3 8 8 N 1.31514 * 120.00465 * 8.06508 * 7 5 4 9 9 Si 1.86802 * 119.99930 * 188.05728 * 7 5 4 10 10 H 1.48506 * 109.46824 * 90.32022 * 9 7 5 11 11 H 1.48501 * 109.47002 * 210.31774 * 9 7 5 12 12 H 1.48498 * 109.47221 * 330.32012 * 9 7 5 13 13 S 1.65604 * 119.99962 * 95.00337 * 3 2 1 14 14 O 1.42102 * 106.40063 * 331.86897 * 13 3 2 15 15 O 1.42091 * 106.40409 * 198.94667 * 13 3 2 16 16 N 1.65596 * 107.21914 * 85.40456 * 13 3 2 17 17 C 1.46501 * 120.00357 * 67.40341 * 16 13 3 18 18 H 1.09004 * 109.46775 * 336.11610 * 17 16 13 19 19 C 1.52999 * 109.46991 * 96.10873 * 17 16 13 20 20 C 1.52993 * 109.47542 * 216.11588 * 17 16 13 21 21 H 1.08997 * 109.47839 * 55.13275 * 20 17 16 22 22 C 1.53005 * 109.46910 * 295.13132 * 20 17 16 23 23 C 1.50706 * 109.47164 * 175.13963 * 20 17 16 24 24 C 1.38226 * 120.00270 * 79.99801 * 23 20 17 25 25 C 1.38238 * 120.00146 * 179.79102 * 24 23 20 26 26 C 1.38244 * 119.99591 * 0.43818 * 25 24 23 27 27 C 1.38237 * 119.99988 * 359.81138 * 26 25 24 28 28 C 1.38229 * 119.99812 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47671 * 59.99952 * 1 2 3 30 30 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47273 * 299.99282 * 1 2 3 32 32 H 1.08991 * 109.46899 * 240.00341 * 2 1 3 33 33 H 1.08994 * 109.47194 * 120.00083 * 2 1 3 34 34 H 1.08996 * 109.47013 * 53.47130 * 4 3 2 35 35 H 1.08992 * 109.47151 * 173.47581 * 4 3 2 36 36 H 0.96993 * 120.00543 * 179.97438 * 8 7 5 37 37 H 0.97002 * 120.00592 * 247.40752 * 16 13 3 38 38 H 1.08999 * 109.47150 * 306.04297 * 19 17 16 39 39 H 1.08995 * 109.47025 * 66.04834 * 19 17 16 40 40 H 1.08998 * 109.47133 * 186.04670 * 19 17 16 41 41 H 1.08997 * 109.47653 * 300.00318 * 22 20 17 42 42 H 1.08999 * 109.46853 * 60.00180 * 22 20 17 43 43 H 1.09002 * 109.46933 * 179.97438 * 22 20 17 44 44 H 1.07999 * 120.00410 * 359.97438 * 24 23 20 45 45 H 1.07997 * 120.00596 * 180.27387 * 25 24 23 46 46 H 1.08000 * 119.99616 * 179.83507 * 26 25 24 47 47 H 1.07998 * 119.99846 * 180.02562 * 27 26 25 48 48 H 1.08003 * 119.99976 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1580 2.1088 -1.2638 5 6 3.2435 1.4718 -2.0927 6 1 3.7255 0.5685 -1.7490 7 6 3.6212 2.0421 -3.2898 8 7 3.1515 3.2214 -3.6336 9 14 4.8003 1.1398 -4.4234 10 1 4.0284 0.2893 -5.3649 11 1 5.6017 2.1266 -5.1910 12 1 5.7079 0.2861 -3.6155 13 16 2.4120 2.1203 1.4287 14 8 1.6063 1.5136 2.4297 15 8 2.4108 3.5177 1.1714 16 7 3.9781 1.7104 1.7773 17 6 5.0695 2.2030 0.9332 18 1 4.6837 2.4391 -0.0585 19 6 5.6701 3.4629 1.5600 20 6 6.1503 1.1263 0.8169 21 1 5.7041 0.2016 0.4512 22 6 6.7765 0.8818 2.1913 23 6 7.2152 1.5854 -0.1457 24 6 8.1907 2.4704 0.2735 25 6 9.1700 2.8881 -0.6083 26 6 9.1683 2.4277 -1.9118 27 6 8.1897 1.5465 -2.3323 28 6 7.2131 1.1255 -1.4493 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.2154 2.0728 -1.8100 35 1 2.4196 3.1468 -1.0585 36 1 3.4175 3.6228 -4.4755 37 1 4.1730 1.1440 2.5402 38 1 4.8793 4.1908 1.7415 39 1 6.1507 3.2055 2.5038 40 1 6.4081 3.8901 0.8811 41 1 7.2227 1.8065 2.5571 42 1 6.0063 0.5498 2.8876 43 1 7.5461 0.1144 2.1086 44 1 8.1896 2.8334 1.2906 45 1 9.9348 3.5762 -0.2797 46 1 9.9319 2.7561 -2.6014 47 1 8.1887 1.1865 -3.3505 48 1 6.4487 0.4368 -1.7777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337056702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:59 Heat of formation + Delta-G solvation = -63.602648 kcal Electronic energy + Delta-G solvation = -30011.373926 eV Core-core repulsion = 26192.573426 eV Total energy + Delta-G solvation = -3818.800500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.58806 -37.01251 -36.52754 -36.01481 -35.18392 -32.70846 -32.66148 -30.73875 -29.89561 -29.09935 -28.56068 -26.64212 -24.94072 -23.22022 -22.19275 -21.85839 -21.59545 -19.47505 -18.87835 -17.27654 -16.75314 -16.53728 -16.37898 -15.80441 -15.24041 -15.06845 -14.79637 -14.45636 -14.02499 -13.81944 -13.60361 -13.49481 -13.18879 -13.00617 -12.83850 -12.36618 -12.08948 -12.01693 -11.93641 -11.84004 -11.76405 -11.67600 -11.45251 -11.34470 -11.27010 -11.08906 -11.06136 -10.85223 -10.62766 -10.61068 -10.45824 -10.30216 -10.23979 -10.00085 -9.77645 -9.17293 -8.61561 -8.48567 -8.37436 -8.03941 -6.13211 -4.17903 1.29688 1.62261 1.68556 3.20495 3.27046 3.30645 3.54865 4.05453 4.18521 4.33409 4.87354 4.95800 5.07060 5.16702 5.20974 5.21769 5.30789 5.37336 5.43930 5.50982 5.61909 5.70372 5.74038 5.78549 5.81598 5.88834 5.92263 6.05402 6.08696 6.16283 6.17122 6.22902 6.29756 6.35776 6.37101 6.61954 6.66583 6.70934 6.72545 6.77605 6.80724 6.95398 7.26648 7.32024 7.37357 7.47458 7.67590 7.84480 8.16263 8.85837 9.46825 10.94851 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.006284 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.726263 B = 4454.808434 C = 6297.689694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.263 1.263 13 S 2.780 3.220 14 O -1.002 7.002 15 O -0.979 6.979 16 N -1.125 6.125 17 C 0.159 3.841 18 H 0.114 0.886 19 C -0.175 4.175 20 C -0.054 4.054 21 H 0.086 0.914 22 C -0.148 4.148 23 C -0.069 4.069 24 C -0.115 4.115 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.101 4.101 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.027 0.973 35 H 0.059 0.941 36 H 0.264 0.736 37 H 0.404 0.596 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 -5.050 7.869 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.709 3.291 10 H -0.210 1.210 11 H -0.212 1.212 12 H -0.188 1.188 13 S 2.789 3.211 14 O -0.986 6.986 15 O -0.962 6.962 16 N -0.883 5.883 17 C 0.052 3.948 18 H 0.132 0.868 19 C -0.234 4.234 20 C -0.074 4.074 21 H 0.105 0.895 22 C -0.205 4.205 23 C -0.069 4.069 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.119 4.119 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.059 -4.197 8.087 12.164 hybrid contribution 0.962 -0.909 -0.895 1.598 sum 9.022 -5.105 7.192 12.616 Atomic orbital electron populations 1.22195 0.97072 1.01258 1.02376 1.20935 0.93589 0.82896 1.02000 1.57714 1.78564 1.23038 1.23965 1.19229 0.97211 0.92632 0.78931 1.21391 1.20395 1.10856 1.04792 0.91888 1.24907 0.96184 0.94435 0.97908 1.69947 1.44575 1.14632 1.23030 0.86827 0.81154 0.79840 0.81257 1.21024 1.21207 1.18784 1.01907 0.72675 0.73823 0.72735 1.93544 1.66957 1.78849 1.59233 1.93583 1.86518 1.30778 1.85321 1.56183 1.24908 1.66934 1.40241 1.20775 0.86586 0.92210 0.95261 0.86831 1.22483 1.01921 0.98139 1.00838 1.20365 0.93599 0.99187 0.94271 0.89527 1.21966 1.00540 1.01848 0.96183 1.19694 0.95714 0.97182 0.94352 1.21062 0.94808 0.97699 0.99752 1.21038 0.99017 1.00529 0.93946 1.21070 0.99010 0.98220 0.96080 1.21115 0.95192 0.98099 0.99411 1.21329 0.97888 0.99900 0.92765 0.92087 0.92513 0.92659 0.89877 0.92331 0.95546 0.92338 0.92618 0.76334 0.91455 0.92510 0.91272 0.91811 0.92513 0.92615 0.86009 0.86586 0.86688 0.86706 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.27 5.93 -4.04 -0.02 2.24 16 3 N -0.99 -19.78 2.93 -115.67 -0.34 -20.11 16 4 C 0.24 5.79 5.36 -5.19 -0.03 5.77 16 5 C -0.53 -13.07 7.77 -34.44 -0.27 -13.34 16 6 H 0.06 1.47 7.57 -52.49 -0.40 1.07 16 7 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 8 N -0.88 -24.56 13.29 55.43 0.74 -23.82 16 9 Si 0.88 19.58 29.48 -169.99 -5.01 14.57 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -5.33 5.52 56.52 0.31 -5.02 16 13 S 2.78 53.83 6.00 -107.50 -0.65 53.19 16 14 O -1.00 -20.19 17.16 -57.17 -0.98 -21.17 16 15 O -0.98 -22.32 15.84 -57.17 -0.91 -23.22 16 16 N -1.12 -17.55 5.50 -4.89 -0.03 -17.58 16 17 C 0.16 2.57 2.53 -67.93 -0.17 2.39 16 18 H 0.11 2.28 6.71 -51.93 -0.35 1.93 16 19 C -0.18 -2.62 8.13 37.16 0.30 -2.32 16 20 C -0.05 -0.75 2.61 -91.77 -0.24 -0.99 16 21 H 0.09 1.23 8.01 -51.93 -0.42 0.82 16 22 C -0.15 -1.61 8.12 37.16 0.30 -1.31 16 23 C -0.07 -1.02 4.68 -104.62 -0.49 -1.51 16 24 C -0.12 -1.53 7.18 -39.59 -0.28 -1.81 16 25 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 26 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 27 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 28 C -0.10 -1.66 9.59 -39.58 -0.38 -2.04 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 32 H 0.08 1.43 7.38 -51.93 -0.38 1.04 16 33 H 0.06 0.88 7.74 -51.93 -0.40 0.48 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.56 6.70 -51.93 -0.35 1.22 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.40 5.14 7.32 -34.47 -0.25 4.89 16 38 H 0.07 1.12 7.72 -51.93 -0.40 0.72 16 39 H 0.06 0.69 6.00 -51.93 -0.31 0.38 16 40 H 0.07 1.02 6.08 -51.93 -0.32 0.70 16 41 H 0.06 0.65 4.69 -51.93 -0.24 0.40 16 42 H 0.06 0.56 6.73 -51.93 -0.35 0.21 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 1.38 5.70 -52.49 -0.30 1.08 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 47 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 48 H 0.13 2.25 6.47 -52.48 -0.34 1.91 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -30.22 385.57 -10.96 -41.17 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -7.41 Total: 11.12 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.19 Total: -19.96 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.37 Total: -61.51 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.89 Total: -44.39 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.01 Total: 14.57 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.65 Total: 53.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.22 -10.96 -41.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.428 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds