Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46456 * 2 1 4 4 C 1.46499 * 120.00313 * 275.00098 * 3 2 1 5 5 C 1.50706 * 109.46940 * 293.47235 * 4 3 2 6 6 H 1.07998 * 119.99958 * 4.53025 * 5 4 3 7 7 C 1.37871 * 119.99910 * 184.52556 * 5 4 3 8 8 N 1.31514 * 120.00465 * 8.06508 * 7 5 4 9 9 Si 1.86802 * 119.99930 * 188.05728 * 7 5 4 10 10 H 1.48506 * 109.46824 * 90.32022 * 9 7 5 11 11 H 1.48501 * 109.47002 * 210.31774 * 9 7 5 12 12 H 1.48498 * 109.47221 * 330.32012 * 9 7 5 13 13 S 1.65604 * 119.99962 * 95.00337 * 3 2 1 14 14 O 1.42102 * 106.40063 * 331.86897 * 13 3 2 15 15 O 1.42091 * 106.40409 * 198.94667 * 13 3 2 16 16 N 1.65596 * 107.21914 * 85.40456 * 13 3 2 17 17 C 1.46501 * 120.00357 * 67.40341 * 16 13 3 18 18 H 1.09004 * 109.46775 * 336.11610 * 17 16 13 19 19 C 1.52999 * 109.46991 * 96.10873 * 17 16 13 20 20 C 1.52993 * 109.47542 * 216.11588 * 17 16 13 21 21 H 1.08997 * 109.47839 * 55.13275 * 20 17 16 22 22 C 1.53005 * 109.46910 * 295.13132 * 20 17 16 23 23 C 1.50706 * 109.47164 * 175.13963 * 20 17 16 24 24 C 1.38226 * 120.00270 * 79.99801 * 23 20 17 25 25 C 1.38238 * 120.00146 * 179.79102 * 24 23 20 26 26 C 1.38244 * 119.99591 * 0.43818 * 25 24 23 27 27 C 1.38237 * 119.99988 * 359.81138 * 26 25 24 28 28 C 1.38229 * 119.99812 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47671 * 59.99952 * 1 2 3 30 30 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47273 * 299.99282 * 1 2 3 32 32 H 1.08991 * 109.46899 * 240.00341 * 2 1 3 33 33 H 1.08994 * 109.47194 * 120.00083 * 2 1 3 34 34 H 1.08996 * 109.47013 * 53.47130 * 4 3 2 35 35 H 1.08992 * 109.47151 * 173.47581 * 4 3 2 36 36 H 0.96993 * 120.00543 * 179.97438 * 8 7 5 37 37 H 0.97002 * 120.00592 * 247.40752 * 16 13 3 38 38 H 1.08999 * 109.47150 * 306.04297 * 19 17 16 39 39 H 1.08995 * 109.47025 * 66.04834 * 19 17 16 40 40 H 1.08998 * 109.47133 * 186.04670 * 19 17 16 41 41 H 1.08997 * 109.47653 * 300.00318 * 22 20 17 42 42 H 1.08999 * 109.46853 * 60.00180 * 22 20 17 43 43 H 1.09002 * 109.46933 * 179.97438 * 22 20 17 44 44 H 1.07999 * 120.00410 * 359.97438 * 24 23 20 45 45 H 1.07997 * 120.00596 * 180.27387 * 25 24 23 46 46 H 1.08000 * 119.99616 * 179.83507 * 26 25 24 47 47 H 1.07998 * 119.99846 * 180.02562 * 27 26 25 48 48 H 1.08003 * 119.99976 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1580 2.1088 -1.2638 5 6 3.2435 1.4718 -2.0927 6 1 3.7255 0.5685 -1.7490 7 6 3.6212 2.0421 -3.2898 8 7 3.1515 3.2214 -3.6336 9 14 4.8003 1.1398 -4.4234 10 1 4.0284 0.2893 -5.3649 11 1 5.6017 2.1266 -5.1910 12 1 5.7079 0.2861 -3.6155 13 16 2.4120 2.1203 1.4287 14 8 1.6063 1.5136 2.4297 15 8 2.4108 3.5177 1.1714 16 7 3.9781 1.7104 1.7773 17 6 5.0695 2.2030 0.9332 18 1 4.6837 2.4391 -0.0585 19 6 5.6701 3.4629 1.5600 20 6 6.1503 1.1263 0.8169 21 1 5.7041 0.2016 0.4512 22 6 6.7765 0.8818 2.1913 23 6 7.2152 1.5854 -0.1457 24 6 8.1907 2.4704 0.2735 25 6 9.1700 2.8881 -0.6083 26 6 9.1683 2.4277 -1.9118 27 6 8.1897 1.5465 -2.3323 28 6 7.2131 1.1255 -1.4493 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.2154 2.0728 -1.8100 35 1 2.4196 3.1468 -1.0585 36 1 3.4175 3.6228 -4.4755 37 1 4.1730 1.1440 2.5402 38 1 4.8793 4.1908 1.7415 39 1 6.1507 3.2055 2.5038 40 1 6.4081 3.8901 0.8811 41 1 7.2227 1.8065 2.5571 42 1 6.0063 0.5498 2.8876 43 1 7.5461 0.1144 2.1086 44 1 8.1896 2.8334 1.2906 45 1 9.9348 3.5762 -0.2797 46 1 9.9319 2.7561 -2.6014 47 1 8.1887 1.1865 -3.3505 48 1 6.4487 0.4368 -1.7777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337056702.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -82.542803 kcal Electronic energy + Delta-G solvation = -30012.195233 eV Core-core repulsion = 26192.573426 eV Total energy + Delta-G solvation = -3819.621807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68456 -38.40982 -37.98453 -37.64763 -36.86637 -34.62975 -33.87047 -31.81626 -31.47354 -30.25788 -29.64338 -28.49793 -26.00849 -24.97088 -23.28493 -23.20272 -23.01843 -20.63045 -20.39680 -18.81651 -18.38195 -18.33192 -17.61485 -17.28966 -16.73493 -16.30263 -16.07483 -15.93367 -15.37992 -15.17615 -14.91865 -14.69825 -14.54715 -14.46643 -14.12467 -13.70332 -13.62317 -13.48492 -13.41018 -13.28654 -13.18414 -12.97496 -12.79917 -12.74226 -12.72074 -12.68551 -12.53831 -12.36260 -12.15135 -11.99349 -11.71190 -11.64157 -11.63166 -11.46771 -11.41310 -10.56296 -10.46234 -9.74625 -9.70251 -9.47335 -8.13811 -6.23778 -0.27376 0.53323 0.59222 1.41557 1.43611 1.52005 2.02619 2.44351 2.64032 2.95926 3.19290 3.47233 3.79860 3.90954 4.00593 4.01353 4.21260 4.23851 4.32878 4.39973 4.45659 4.47476 4.55234 4.58503 4.65065 4.70265 4.74608 4.86104 4.94398 5.00990 5.05322 5.14822 5.19476 5.23542 5.24468 5.25882 5.30957 5.39616 5.44237 5.52574 5.55000 5.66870 5.70665 5.80804 5.85289 5.91694 6.17164 6.21339 6.29597 6.86817 7.44922 8.94749 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.006284 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.726263 B = 4454.808434 C = 6297.689694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.259 3.741 5 C -0.523 4.523 6 H 0.075 0.925 7 C 0.021 3.979 8 N -0.927 5.927 9 Si 0.935 3.065 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.236 1.236 13 S 2.794 3.206 14 O -1.007 7.007 15 O -1.016 7.016 16 N -1.106 6.106 17 C 0.159 3.841 18 H 0.069 0.931 19 C -0.173 4.173 20 C -0.048 4.048 21 H 0.078 0.922 22 C -0.145 4.145 23 C -0.080 4.080 24 C -0.116 4.116 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.141 4.141 28 C -0.128 4.128 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.421 0.579 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.114 0.886 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -6.518 9.656 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.562 4.562 6 H 0.093 0.907 7 C -0.179 4.179 8 N -0.567 5.567 9 Si 0.761 3.239 10 H -0.212 1.212 11 H -0.220 1.220 12 H -0.159 1.159 13 S 2.802 3.198 14 O -0.991 6.991 15 O -1.000 7.000 16 N -0.869 5.869 17 C 0.052 3.948 18 H 0.088 0.912 19 C -0.231 4.231 20 C -0.068 4.068 21 H 0.097 0.903 22 C -0.202 4.202 23 C -0.080 4.080 24 C -0.133 4.133 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.159 4.159 28 C -0.146 4.146 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.023 0.977 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.258 0.742 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.164 0.836 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.132 0.868 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.343 -5.712 9.910 15.421 hybrid contribution 0.248 -0.446 -1.398 1.488 sum 10.591 -6.158 8.513 14.918 Atomic orbital electron populations 1.22183 0.96204 1.03099 1.01196 1.21220 0.94454 0.81332 1.03281 1.57615 1.79306 1.24112 1.22567 1.18746 0.95991 0.91454 0.80323 1.21601 1.19640 1.10611 1.04364 0.90718 1.25644 0.97849 0.94913 0.99482 1.70090 1.46648 1.16453 1.23504 0.85958 0.79636 0.78890 0.79452 1.21187 1.21983 1.15897 1.01317 0.73287 0.72907 0.72266 1.93529 1.67767 1.78681 1.59079 1.93538 1.87283 1.33420 1.85770 1.55733 1.23372 1.67060 1.40732 1.20701 0.86946 0.93907 0.93266 0.91236 1.22471 1.01343 0.96828 1.02500 1.20307 0.92715 0.97666 0.96149 0.90315 1.21969 1.01125 1.02923 0.94134 1.19835 0.96481 0.97787 0.93937 1.21364 0.94146 0.96809 1.01022 1.21455 0.99297 1.00198 0.93417 1.21391 0.98883 0.97435 0.97114 1.21276 0.95945 0.99178 0.99481 1.21329 0.98322 1.00929 0.94062 0.93605 0.89177 0.93476 0.89898 0.89659 0.97703 0.95755 0.92951 0.74189 0.93793 0.89010 0.91067 0.90582 0.91178 0.91501 0.83631 0.83482 0.84408 0.86757 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.21 10.24 71.98 0.74 -4.48 16 2 C 0.12 4.08 5.93 86.38 0.51 4.59 16 3 N -0.99 -40.28 2.93 -519.87 -1.52 -41.80 16 4 C 0.26 12.93 5.36 85.64 0.46 13.38 16 5 C -0.52 -26.19 7.77 25.60 0.20 -25.99 16 6 H 0.07 3.50 7.57 -2.91 -0.02 3.47 16 7 C 0.02 1.10 5.45 84.65 0.46 1.56 16 8 N -0.93 -53.66 13.29 21.44 0.28 -53.37 16 9 Si 0.93 40.92 29.48 68.60 2.02 42.94 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.24 -9.18 5.52 99.48 0.55 -8.63 16 13 S 2.79 108.47 6.00 -56.49 -0.34 108.13 16 14 O -1.01 -39.51 17.16 -128.00 -2.20 -41.71 16 15 O -1.02 -47.94 15.84 -128.00 -2.03 -49.97 16 16 N -1.11 -33.23 5.50 -169.39 -0.93 -34.16 16 17 C 0.16 5.02 2.53 44.99 0.11 5.14 16 18 H 0.07 2.87 6.71 -2.38 -0.02 2.85 16 19 C -0.17 -4.93 8.13 71.98 0.59 -4.34 16 20 C -0.05 -1.26 2.61 -11.54 -0.03 -1.29 16 21 H 0.08 2.15 8.01 -2.39 -0.02 2.13 16 22 C -0.14 -2.62 8.12 71.98 0.58 -2.03 16 23 C -0.08 -2.25 4.68 -19.87 -0.09 -2.35 16 24 C -0.12 -2.74 7.18 22.27 0.16 -2.58 16 25 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 26 C -0.13 -3.27 10.05 22.27 0.22 -3.04 16 27 C -0.14 -4.24 10.05 22.27 0.22 -4.02 16 28 C -0.13 -4.17 9.59 22.27 0.21 -3.96 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 1.52 8.03 -2.38 -0.02 1.51 16 32 H 0.08 2.77 7.38 -2.39 -0.02 2.75 16 33 H 0.09 2.38 7.74 -2.39 -0.02 2.37 16 34 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.02 1.39 6.70 -2.39 -0.02 1.37 16 36 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.42 9.65 7.32 -96.74 -0.71 8.94 16 38 H 0.04 1.45 7.72 -2.39 -0.02 1.44 16 39 H 0.09 1.92 6.00 -2.39 -0.01 1.91 16 40 H 0.07 1.99 6.08 -2.39 -0.01 1.97 16 41 H 0.08 1.19 4.69 -2.39 -0.01 1.18 16 42 H 0.07 1.09 6.73 -2.39 -0.02 1.07 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.15 2.68 5.70 -2.91 -0.02 2.66 16 45 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 46 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 47 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 48 H 0.11 3.85 6.47 -2.91 -0.02 3.83 16 Total: -1.00 -68.23 385.57 -0.04 -68.26 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.10 Total: 33.67 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 4.57 Total: -31.99 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -2.17 Total: -129.33 kcal Atomic # 8 Polarization: -87.46 SS G_CDS: -4.22 Total: -91.68 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.02 Total: 42.94 kcal Atomic # 16 Polarization: 108.47 SS G_CDS: -0.34 Total: 108.13 kcal Total: -68.23 -0.04 -68.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056702.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.280 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds