Wall clock time and date at job start Sat Apr 11 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47528 * 2 1 4 4 C 1.46499 * 119.99838 * 275.73244 * 3 2 1 5 5 C 1.50699 * 109.47115 * 283.62671 * 4 3 2 6 6 H 1.07998 * 120.00014 * 4.72438 * 5 4 3 7 7 C 1.37878 * 120.00082 * 184.71692 * 5 4 3 8 8 N 1.31517 * 119.99988 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00148 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47290 * 89.99207 * 9 7 5 11 11 H 1.48501 * 109.47207 * 209.99673 * 9 7 5 12 12 H 1.48501 * 109.46736 * 329.99512 * 9 7 5 13 13 S 1.65601 * 120.00038 * 96.00471 * 3 2 1 14 14 O 1.42100 * 106.40022 * 194.75612 * 13 3 2 15 15 O 1.42096 * 106.40222 * 327.67780 * 13 3 2 16 16 N 1.65602 * 107.21462 * 81.22022 * 13 3 2 17 17 C 1.46497 * 120.00338 * 65.51154 * 16 13 3 18 18 H 1.09006 * 109.46864 * 333.49914 * 17 16 13 19 19 C 1.53000 * 109.47063 * 93.49363 * 17 16 13 20 20 C 1.52994 * 109.47329 * 213.49783 * 17 16 13 21 21 H 1.09001 * 109.47008 * 303.40999 * 20 17 16 22 22 C 1.53003 * 109.47127 * 63.40740 * 20 17 16 23 23 C 1.50699 * 109.47430 * 183.40946 * 20 17 16 24 24 C 1.38239 * 120.00013 * 299.72845 * 23 20 17 25 25 C 1.38231 * 119.99809 * 179.78438 * 24 23 20 26 26 C 1.38236 * 120.00287 * 0.44263 * 25 24 23 27 27 C 1.38238 * 119.99743 * 359.81052 * 26 25 24 28 28 C 1.38231 * 120.00058 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47786 * 185.03316 * 1 2 3 30 30 H 1.09000 * 109.47091 * 305.03731 * 1 2 3 31 31 H 1.09003 * 109.47158 * 65.03271 * 1 2 3 32 32 H 1.08997 * 109.46446 * 239.99702 * 2 1 3 33 33 H 1.09001 * 109.46902 * 120.00008 * 2 1 3 34 34 H 1.09007 * 109.47170 * 43.62431 * 4 3 2 35 35 H 1.09003 * 109.47343 * 163.62559 * 4 3 2 36 36 H 0.96998 * 119.99642 * 180.02562 * 8 7 5 37 37 H 0.97003 * 119.99699 * 245.51164 * 16 13 3 38 38 H 1.09003 * 109.46884 * 60.00004 * 19 17 16 39 39 H 1.09002 * 109.47033 * 179.97438 * 19 17 16 40 40 H 1.09004 * 109.47401 * 300.00453 * 19 17 16 41 41 H 1.09009 * 109.47006 * 186.24450 * 22 20 17 42 42 H 1.09001 * 109.47423 * 306.24403 * 22 20 17 43 43 H 1.09003 * 109.46972 * 66.24816 * 22 20 17 44 44 H 1.08001 * 119.99630 * 359.97438 * 24 23 20 45 45 H 1.08003 * 119.99933 * 180.26840 * 25 24 23 46 46 H 1.08001 * 120.00439 * 179.83508 * 26 25 24 47 47 H 1.07999 * 119.99971 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.00261 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1432 2.1139 -1.2624 5 6 3.3688 1.6394 -1.9997 6 1 3.9497 0.8172 -1.6086 7 6 3.7486 2.2548 -3.1736 8 7 4.8185 1.8410 -3.8168 9 14 2.7442 3.6773 -3.8498 10 1 3.2648 4.9555 -3.3019 11 1 2.8466 3.6955 -5.3312 12 1 1.3225 3.5116 -3.4540 13 16 2.4359 2.1118 1.4263 14 8 2.5272 3.5032 1.1526 15 8 1.5779 1.5699 2.4209 16 7 3.9675 1.6083 1.8049 17 6 5.0953 1.9862 0.9497 18 1 4.7388 2.1607 -0.0656 19 6 5.7397 3.2641 1.4906 20 6 6.1288 0.8582 0.9405 21 1 6.4404 0.6427 1.9625 22 6 5.5094 -0.3961 0.3209 23 6 7.3262 1.2806 0.1288 24 6 7.1771 1.6014 -1.2076 25 6 8.2747 1.9931 -1.9510 26 6 9.5230 2.0552 -1.3604 27 6 9.6730 1.7293 -0.0254 28 6 8.5747 1.3419 0.7191 29 1 -0.3634 -1.0236 0.0902 30 1 -0.3633 0.5900 0.8414 31 1 -0.3633 0.4338 -0.9316 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.2591 1.9359 -1.8748 35 1 2.2335 3.1805 -1.0561 36 1 5.0858 2.2742 -4.6425 37 1 4.1178 1.0631 2.5930 38 1 6.0960 3.0897 2.5059 39 1 6.5791 3.5451 0.8545 40 1 5.0033 4.0678 1.4971 41 1 6.2057 -1.2295 0.4146 42 1 4.5818 -0.6376 0.8399 43 1 5.2994 -0.2149 -0.7332 44 1 6.2025 1.5489 -1.6699 45 1 8.1574 2.2479 -2.9939 46 1 10.3810 2.3586 -1.9419 47 1 10.6482 1.7782 0.4361 48 1 8.6918 1.0877 1.7623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337056703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:02 Heat of formation + Delta-G solvation = -65.456068 kcal Electronic energy + Delta-G solvation = -30195.490355 eV Core-core repulsion = 26376.609485 eV Total energy + Delta-G solvation = -3818.880870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.30348 -36.89844 -36.52756 -36.12497 -35.27423 -32.72304 -32.55141 -30.38600 -30.23281 -29.09545 -28.74259 -27.17186 -23.67919 -22.95293 -22.37548 -21.76855 -21.52969 -19.67596 -18.82238 -17.45783 -16.81707 -16.79854 -16.23563 -15.93898 -15.23538 -14.71960 -14.35950 -14.28282 -13.91476 -13.60671 -13.56118 -13.30410 -12.99536 -12.81015 -12.69794 -12.51354 -12.47781 -12.08810 -12.00661 -11.94793 -11.63521 -11.54446 -11.40678 -11.38710 -11.21418 -11.17222 -11.00974 -10.92129 -10.61839 -10.56824 -10.37198 -10.31839 -10.18145 -10.01230 -9.51216 -9.13794 -8.68617 -8.41652 -8.19212 -8.13990 -6.23529 -4.22853 1.22539 1.79988 1.90955 3.23659 3.30883 3.36464 3.46507 4.10430 4.26449 4.31157 4.95593 5.03427 5.07665 5.12898 5.33236 5.34323 5.43713 5.49367 5.61803 5.68583 5.72100 5.74323 5.86946 5.89531 5.93008 6.03787 6.09172 6.14809 6.23627 6.25354 6.31435 6.34080 6.48117 6.53117 6.61533 6.63393 6.66063 6.71695 6.82581 6.87562 6.89161 7.08732 7.16839 7.21787 7.28793 7.45441 7.56258 7.59805 8.35268 8.79264 9.38611 10.86180 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010205 B = 0.006039 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.174545 B = 4635.749852 C = 6197.837360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.986 5.986 4 C 0.210 3.790 5 C -0.546 4.546 6 H 0.090 0.910 7 C 0.083 3.917 8 N -0.885 5.885 9 Si 0.863 3.137 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.783 3.217 14 O -0.981 6.981 15 O -1.000 7.000 16 N -1.123 6.123 17 C 0.147 3.853 18 H 0.124 0.876 19 C -0.167 4.167 20 C -0.048 4.048 21 H 0.070 0.930 22 C -0.147 4.147 23 C -0.076 4.076 24 C -0.097 4.097 25 C -0.110 4.110 26 C -0.133 4.133 27 C -0.134 4.134 28 C -0.124 4.124 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.046 0.954 36 H 0.266 0.734 37 H 0.405 0.595 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.162 0.838 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.073 -3.382 7.424 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.827 5.827 4 C 0.087 3.913 5 C -0.584 4.584 6 H 0.108 0.892 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.690 3.310 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.190 1.190 13 S 2.791 3.209 14 O -0.964 6.964 15 O -0.984 6.984 16 N -0.880 5.880 17 C 0.041 3.959 18 H 0.142 0.858 19 C -0.226 4.226 20 C -0.068 4.068 21 H 0.089 0.911 22 C -0.204 4.204 23 C -0.077 4.077 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.152 4.152 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.237 0.763 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.180 0.820 45 H 0.139 0.861 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.595 -2.612 7.591 8.796 hybrid contribution 0.043 0.263 -0.412 0.491 sum 3.638 -2.350 7.178 8.384 Atomic orbital electron populations 1.22208 0.96968 1.01437 1.02321 1.20976 0.93552 0.82502 1.02393 1.57515 1.78660 1.23102 1.23414 1.19613 0.98310 0.92316 0.81081 1.21504 1.10042 1.19289 1.07604 0.89184 1.24780 0.94667 0.96441 0.96275 1.69811 1.23942 1.41245 1.17221 0.87037 0.81723 0.83835 0.78392 1.19765 1.21200 1.19009 1.01830 0.72668 0.73770 0.72644 1.93567 1.86609 1.31164 1.85090 1.93555 1.64617 1.80783 1.59415 1.56053 1.25014 1.69622 1.37333 1.21102 0.85906 0.92862 0.96064 0.85799 1.22298 1.01490 0.98188 1.00659 1.20322 0.92716 0.95545 0.98175 0.91135 1.21922 0.99722 0.95630 1.03110 1.19761 0.93803 0.99552 0.94584 1.21828 1.01532 0.95086 0.92985 1.21229 0.92386 0.98981 1.00248 1.21112 0.97426 1.01435 0.95135 1.20938 0.98071 1.01607 0.94573 1.20935 0.92547 1.01527 0.99177 0.92328 0.92487 0.92304 0.89689 0.92026 0.94933 0.93634 0.92417 0.76297 0.93201 0.91564 0.91468 0.93408 0.92579 0.90191 0.82025 0.86091 0.87058 0.87084 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 10.23 37.16 0.38 -2.13 16 2 C 0.13 2.12 6.02 -4.04 -0.02 2.09 16 3 N -0.99 -18.48 2.86 -115.66 -0.33 -18.82 16 4 C 0.21 4.55 4.55 -5.19 -0.02 4.53 16 5 C -0.55 -12.70 7.62 -34.44 -0.26 -12.97 16 6 H 0.09 2.13 5.85 -52.49 -0.31 1.82 16 7 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.88 -22.38 13.20 55.43 0.73 -21.64 16 9 Si 0.86 19.68 27.38 -169.99 -4.65 15.03 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -5.92 6.68 56.52 0.38 -5.54 16 13 S 2.78 52.03 5.97 -107.50 -0.64 51.39 16 14 O -0.98 -21.40 15.59 -57.17 -0.89 -22.29 16 15 O -1.00 -19.55 17.29 -57.17 -0.99 -20.54 16 16 N -1.12 -17.44 4.82 -4.89 -0.02 -17.47 16 17 C 0.15 2.44 2.14 -67.93 -0.15 2.29 16 18 H 0.12 2.45 5.07 -51.93 -0.26 2.18 16 19 C -0.17 -2.70 9.22 37.16 0.34 -2.36 16 20 C -0.05 -0.70 2.27 -91.77 -0.21 -0.91 16 21 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 22 C -0.15 -2.20 9.04 37.16 0.34 -1.86 16 23 C -0.08 -1.21 3.35 -104.62 -0.35 -1.56 16 24 C -0.10 -1.76 8.68 -39.58 -0.34 -2.10 16 25 C -0.11 -1.87 10.05 -39.58 -0.40 -2.27 16 26 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 27 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 28 C -0.12 -1.74 9.67 -39.58 -0.38 -2.13 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.89 8.01 -51.93 -0.42 0.47 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.38 7.96 -51.93 -0.41 0.96 16 33 H 0.06 0.88 7.81 -51.93 -0.41 0.47 16 34 H 0.03 0.70 7.53 -51.93 -0.39 0.31 16 35 H 0.05 1.05 5.88 -51.93 -0.31 0.75 16 36 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.40 5.14 8.82 -34.47 -0.30 4.83 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.08 7.12 -51.93 -0.37 0.71 16 40 H 0.07 1.18 7.48 -51.93 -0.39 0.79 16 41 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 43 H 0.08 1.43 5.34 -51.93 -0.28 1.15 16 44 H 0.16 3.43 6.02 -52.49 -0.32 3.12 16 45 H 0.12 2.06 8.06 -52.48 -0.42 1.63 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 48 H 0.11 1.33 7.95 -52.48 -0.42 0.91 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -27.51 387.69 -10.42 -37.93 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -7.49 Total: 12.56 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.97 Total: -21.99 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.38 Total: -57.93 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.88 Total: -42.84 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.65 Total: 15.03 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.64 Total: 51.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.51 -10.42 -37.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.523 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds