Wall clock time and date at job start Sat Apr 11 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47528 * 2 1 4 4 C 1.46499 * 119.99838 * 275.73244 * 3 2 1 5 5 C 1.50699 * 109.47115 * 283.62671 * 4 3 2 6 6 H 1.07998 * 120.00014 * 4.72438 * 5 4 3 7 7 C 1.37878 * 120.00082 * 184.71692 * 5 4 3 8 8 N 1.31517 * 119.99988 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00148 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47290 * 89.99207 * 9 7 5 11 11 H 1.48501 * 109.47207 * 209.99673 * 9 7 5 12 12 H 1.48501 * 109.46736 * 329.99512 * 9 7 5 13 13 S 1.65601 * 120.00038 * 96.00471 * 3 2 1 14 14 O 1.42100 * 106.40022 * 194.75612 * 13 3 2 15 15 O 1.42096 * 106.40222 * 327.67780 * 13 3 2 16 16 N 1.65602 * 107.21462 * 81.22022 * 13 3 2 17 17 C 1.46497 * 120.00338 * 65.51154 * 16 13 3 18 18 H 1.09006 * 109.46864 * 333.49914 * 17 16 13 19 19 C 1.53000 * 109.47063 * 93.49363 * 17 16 13 20 20 C 1.52994 * 109.47329 * 213.49783 * 17 16 13 21 21 H 1.09001 * 109.47008 * 303.40999 * 20 17 16 22 22 C 1.53003 * 109.47127 * 63.40740 * 20 17 16 23 23 C 1.50699 * 109.47430 * 183.40946 * 20 17 16 24 24 C 1.38239 * 120.00013 * 299.72845 * 23 20 17 25 25 C 1.38231 * 119.99809 * 179.78438 * 24 23 20 26 26 C 1.38236 * 120.00287 * 0.44263 * 25 24 23 27 27 C 1.38238 * 119.99743 * 359.81052 * 26 25 24 28 28 C 1.38231 * 120.00058 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47786 * 185.03316 * 1 2 3 30 30 H 1.09000 * 109.47091 * 305.03731 * 1 2 3 31 31 H 1.09003 * 109.47158 * 65.03271 * 1 2 3 32 32 H 1.08997 * 109.46446 * 239.99702 * 2 1 3 33 33 H 1.09001 * 109.46902 * 120.00008 * 2 1 3 34 34 H 1.09007 * 109.47170 * 43.62431 * 4 3 2 35 35 H 1.09003 * 109.47343 * 163.62559 * 4 3 2 36 36 H 0.96998 * 119.99642 * 180.02562 * 8 7 5 37 37 H 0.97003 * 119.99699 * 245.51164 * 16 13 3 38 38 H 1.09003 * 109.46884 * 60.00004 * 19 17 16 39 39 H 1.09002 * 109.47033 * 179.97438 * 19 17 16 40 40 H 1.09004 * 109.47401 * 300.00453 * 19 17 16 41 41 H 1.09009 * 109.47006 * 186.24450 * 22 20 17 42 42 H 1.09001 * 109.47423 * 306.24403 * 22 20 17 43 43 H 1.09003 * 109.46972 * 66.24816 * 22 20 17 44 44 H 1.08001 * 119.99630 * 359.97438 * 24 23 20 45 45 H 1.08003 * 119.99933 * 180.26840 * 25 24 23 46 46 H 1.08001 * 120.00439 * 179.83508 * 26 25 24 47 47 H 1.07999 * 119.99971 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.00261 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1432 2.1139 -1.2624 5 6 3.3688 1.6394 -1.9997 6 1 3.9497 0.8172 -1.6086 7 6 3.7486 2.2548 -3.1736 8 7 4.8185 1.8410 -3.8168 9 14 2.7442 3.6773 -3.8498 10 1 3.2648 4.9555 -3.3019 11 1 2.8466 3.6955 -5.3312 12 1 1.3225 3.5116 -3.4540 13 16 2.4359 2.1118 1.4263 14 8 2.5272 3.5032 1.1526 15 8 1.5779 1.5699 2.4209 16 7 3.9675 1.6083 1.8049 17 6 5.0953 1.9862 0.9497 18 1 4.7388 2.1607 -0.0656 19 6 5.7397 3.2641 1.4906 20 6 6.1288 0.8582 0.9405 21 1 6.4404 0.6427 1.9625 22 6 5.5094 -0.3961 0.3209 23 6 7.3262 1.2806 0.1288 24 6 7.1771 1.6014 -1.2076 25 6 8.2747 1.9931 -1.9510 26 6 9.5230 2.0552 -1.3604 27 6 9.6730 1.7293 -0.0254 28 6 8.5747 1.3419 0.7191 29 1 -0.3634 -1.0236 0.0902 30 1 -0.3633 0.5900 0.8414 31 1 -0.3633 0.4338 -0.9316 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.2591 1.9359 -1.8748 35 1 2.2335 3.1805 -1.0561 36 1 5.0858 2.2742 -4.6425 37 1 4.1178 1.0631 2.5930 38 1 6.0960 3.0897 2.5059 39 1 6.5791 3.5451 0.8545 40 1 5.0033 4.0678 1.4971 41 1 6.2057 -1.2295 0.4146 42 1 4.5818 -0.6376 0.8399 43 1 5.2994 -0.2149 -0.7332 44 1 6.2025 1.5489 -1.6699 45 1 8.1574 2.2479 -2.9939 46 1 10.3810 2.3586 -1.9419 47 1 10.6482 1.7782 0.4361 48 1 8.6918 1.0877 1.7623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337056703.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:02 Heat of formation + Delta-G solvation = -82.031425 kcal Electronic energy + Delta-G solvation = -30196.209117 eV Core-core repulsion = 26376.609485 eV Total energy + Delta-G solvation = -3819.599632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.50540 -38.38078 -37.92692 -37.60345 -36.87344 -34.55046 -33.81189 -31.72805 -31.56366 -30.39045 -29.94894 -28.84303 -24.93221 -24.48769 -23.62343 -23.07425 -22.98496 -20.92618 -20.28352 -19.07054 -18.50971 -18.33122 -17.46126 -17.35351 -16.68476 -16.11395 -15.93201 -15.57899 -15.37833 -14.93009 -14.84838 -14.59959 -14.52344 -14.12540 -14.04211 -13.97566 -13.79998 -13.72366 -13.52614 -13.29864 -13.09098 -13.04163 -12.83640 -12.75771 -12.71074 -12.57595 -12.49319 -12.27398 -12.15874 -12.08089 -11.86396 -11.63036 -11.58096 -11.41211 -11.09141 -10.61825 -10.48180 -9.71784 -9.61382 -9.38097 -8.15420 -6.14913 -0.27711 0.61961 0.71725 1.36455 1.43461 1.47503 1.99909 2.41015 2.62719 3.06514 3.17580 3.47287 3.79612 3.90353 3.99836 4.21154 4.29892 4.31930 4.38005 4.48000 4.49867 4.55217 4.59983 4.65784 4.72456 4.74815 4.85311 4.93271 4.96733 4.98677 5.03781 5.08724 5.10147 5.14134 5.30153 5.36302 5.40307 5.43012 5.46095 5.50619 5.53736 5.61820 5.73405 5.87852 5.94026 6.00096 6.28968 6.35614 6.45538 6.90315 7.46518 8.94887 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010205 B = 0.006039 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.174545 B = 4635.749852 C = 6197.837360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 N -0.989 5.989 4 C 0.218 3.782 5 C -0.530 4.530 6 H 0.082 0.918 7 C 0.045 3.955 8 N -0.907 5.907 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.255 1.255 13 S 2.794 3.206 14 O -1.014 7.014 15 O -1.005 7.005 16 N -1.106 6.106 17 C 0.149 3.851 18 H 0.088 0.912 19 C -0.164 4.164 20 C -0.041 4.041 21 H 0.105 0.895 22 C -0.141 4.141 23 C -0.082 4.082 24 C -0.123 4.123 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.127 4.127 28 C -0.119 4.119 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.422 0.578 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.135 0.865 47 H 0.147 0.853 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -4.530 9.973 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.002 4.002 3 N -0.829 5.829 4 C 0.093 3.907 5 C -0.569 4.569 6 H 0.100 0.900 7 C -0.157 4.157 8 N -0.546 5.546 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.179 1.179 13 S 2.802 3.198 14 O -0.998 6.998 15 O -0.989 6.989 16 N -0.868 5.868 17 C 0.042 3.958 18 H 0.106 0.894 19 C -0.223 4.223 20 C -0.060 4.060 21 H 0.123 0.877 22 C -0.198 4.198 23 C -0.082 4.082 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.137 4.137 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.258 0.742 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.142 0.858 45 H 0.122 0.878 46 H 0.153 0.847 47 H 0.165 0.835 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.718 -3.782 10.156 11.820 hybrid contribution -0.258 0.578 -1.160 1.321 sum 4.460 -3.204 8.996 10.540 Atomic orbital electron populations 1.22192 0.95789 1.03119 1.01568 1.21228 0.94606 0.81032 1.03300 1.57444 1.79138 1.24137 1.22186 1.19352 0.97444 0.91714 0.82197 1.21630 1.09979 1.18335 1.06925 0.89987 1.25240 0.95388 0.97966 0.97074 1.69911 1.24980 1.42229 1.17500 0.86511 0.81466 0.81900 0.77884 1.20822 1.21144 1.17946 1.01332 0.73087 0.73032 0.72318 1.93527 1.87214 1.33545 1.85526 1.93541 1.65284 1.80677 1.59410 1.55664 1.23623 1.69680 1.37845 1.20975 0.86333 0.94150 0.94379 0.89384 1.22251 1.00652 0.97131 1.02232 1.20313 0.91714 0.94297 0.99705 0.87718 1.21844 1.00710 0.96395 1.00880 1.19832 0.95183 0.99666 0.93546 1.21608 1.00273 0.97627 0.94645 1.21220 0.93676 1.00517 0.99762 1.21366 0.96816 1.00719 0.96141 1.21370 0.99588 0.99680 0.93883 1.21300 0.91545 1.00181 1.00685 0.89387 0.93393 0.92941 0.90092 0.89808 0.94722 0.95252 0.92828 0.74197 0.90208 0.92110 0.93601 0.91927 0.91502 0.93915 0.85803 0.87846 0.84743 0.83512 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 10.23 71.98 0.74 -3.94 16 2 C 0.12 3.82 6.02 86.38 0.52 4.34 16 3 N -0.99 -36.93 2.86 -519.85 -1.49 -38.41 16 4 C 0.22 9.60 4.55 85.63 0.39 9.99 16 5 C -0.53 -25.55 7.62 25.60 0.20 -25.35 16 6 H 0.08 4.07 5.85 -2.91 -0.02 4.05 16 7 C 0.04 2.28 5.47 84.65 0.46 2.74 16 8 N -0.91 -48.28 13.20 21.45 0.28 -48.00 16 9 Si 0.90 41.44 27.38 68.60 1.88 43.32 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.26 -11.29 6.68 99.48 0.66 -10.63 16 13 S 2.79 102.86 5.97 -56.49 -0.34 102.52 16 14 O -1.01 -44.80 15.59 -128.00 -1.99 -46.80 16 15 O -1.01 -37.76 17.29 -128.00 -2.21 -39.97 16 16 N -1.11 -32.71 4.82 -169.39 -0.82 -33.53 16 17 C 0.15 4.82 2.14 44.99 0.10 4.92 16 18 H 0.09 3.60 5.07 -2.38 -0.01 3.58 16 19 C -0.16 -5.12 9.22 71.98 0.66 -4.45 16 20 C -0.04 -1.12 2.27 -11.54 -0.03 -1.14 16 21 H 0.10 2.20 7.88 -2.39 -0.02 2.18 16 22 C -0.14 -4.09 9.04 71.98 0.65 -3.43 16 23 C -0.08 -2.48 3.35 -19.86 -0.07 -2.55 16 24 C -0.12 -4.67 8.68 22.27 0.19 -4.47 16 25 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 26 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 27 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 28 C -0.12 -2.94 9.67 22.27 0.22 -2.72 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.42 8.01 -2.39 -0.02 1.40 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 2.57 7.96 -2.39 -0.02 2.55 16 33 H 0.08 2.20 7.81 -2.39 -0.02 2.18 16 34 H 0.03 1.51 7.53 -2.38 -0.02 1.49 16 35 H 0.03 1.40 5.88 -2.39 -0.01 1.39 16 36 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.42 9.47 8.82 -96.74 -0.85 8.62 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.95 7.12 -2.39 -0.02 1.93 16 40 H 0.04 1.61 7.48 -2.38 -0.02 1.59 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.07 1.73 7.53 -2.39 -0.02 1.71 16 43 H 0.04 1.57 5.34 -2.39 -0.01 1.56 16 44 H 0.12 5.67 6.02 -2.91 -0.02 5.65 16 45 H 0.10 3.83 8.06 -2.91 -0.02 3.81 16 46 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 48 H 0.14 2.62 7.95 -2.91 -0.02 2.60 16 Total: -1.00 -61.96 387.69 0.08 -61.88 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: 0.06 Total: 35.75 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 4.70 Total: -36.76 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -2.02 Total: -119.94 kcal Atomic # 8 Polarization: -82.56 SS G_CDS: -4.21 Total: -86.77 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.32 kcal Atomic # 16 Polarization: 102.86 SS G_CDS: -0.34 Total: 102.52 kcal Total: -61.96 0.08 -61.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056703.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.152 kcal (2) G-P(sol) polarization free energy of solvation -61.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds