Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47052 * 2 1 4 4 C 1.46498 * 120.00355 * 275.00418 * 3 2 1 5 5 C 1.50695 * 109.47104 * 278.50659 * 4 3 2 6 6 H 1.08002 * 120.00246 * 5.24251 * 5 4 3 7 7 C 1.37879 * 120.00342 * 185.23999 * 5 4 3 8 8 N 1.31520 * 119.99908 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00285 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47490 * 60.00008 * 9 7 5 11 11 H 1.48500 * 109.47445 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47227 * 299.99829 * 9 7 5 13 13 S 1.65599 * 119.99943 * 94.99999 * 3 2 1 14 14 O 1.42103 * 106.40346 * 330.23165 * 13 3 2 15 15 O 1.42104 * 106.40650 * 197.30799 * 13 3 2 16 16 N 1.65603 * 107.21701 * 83.76781 * 13 3 2 17 17 C 1.46495 * 120.00103 * 293.73092 * 16 13 3 18 18 H 1.08998 * 109.47191 * 27.05340 * 17 16 13 19 19 C 1.53004 * 109.46876 * 267.05769 * 17 16 13 20 20 C 1.52995 * 109.47483 * 147.05939 * 17 16 13 21 21 H 1.08998 * 109.47396 * 59.99526 * 20 17 16 22 22 C 1.53004 * 109.46926 * 299.99800 * 20 17 16 23 23 C 1.50698 * 109.47389 * 179.97438 * 20 17 16 24 24 C 1.38230 * 120.00066 * 59.72553 * 23 20 17 25 25 C 1.38239 * 120.00175 * 179.78872 * 24 23 20 26 26 C 1.38236 * 119.99590 * 0.44183 * 25 24 23 27 27 C 1.38228 * 120.00257 * 359.80984 * 26 25 24 28 28 C 1.38238 * 119.99815 * 239.99969 * 23 20 17 29 29 H 1.09002 * 109.46830 * 299.99439 * 1 2 3 30 30 H 1.08994 * 109.47440 * 60.00019 * 1 2 3 31 31 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46830 * 240.00560 * 2 1 3 33 33 H 1.09000 * 109.47467 * 120.00414 * 2 1 3 34 34 H 1.09002 * 109.47185 * 38.50839 * 4 3 2 35 35 H 1.08996 * 109.47200 * 158.50659 * 4 3 2 36 36 H 0.96995 * 120.00243 * 179.97438 * 8 7 5 37 37 H 0.96999 * 119.99922 * 113.72336 * 16 13 3 38 38 H 1.08991 * 109.47427 * 54.78175 * 19 17 16 39 39 H 1.09003 * 109.47266 * 174.78346 * 19 17 16 40 40 H 1.09002 * 109.47237 * 294.78141 * 19 17 16 41 41 H 1.08995 * 109.47013 * 60.00218 * 22 20 17 42 42 H 1.08998 * 109.46860 * 300.00055 * 22 20 17 43 43 H 1.09000 * 109.47367 * 179.97438 * 22 20 17 44 44 H 1.08002 * 120.00198 * 359.97438 * 24 23 20 45 45 H 1.08001 * 120.00513 * 180.27141 * 25 24 23 46 46 H 1.07999 * 119.99806 * 179.83088 * 26 25 24 47 47 H 1.08003 * 120.00555 * 180.02562 * 27 26 25 48 48 H 1.08001 * 120.00200 * 359.97230 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4566 1.7231 -1.9244 6 1 4.0715 0.9464 -1.4943 7 6 3.8595 2.3617 -3.0781 8 7 3.1104 3.3072 -3.6023 9 14 5.4686 1.8832 -3.8973 10 1 5.4225 0.4488 -4.2788 11 1 5.6714 2.7127 -5.1122 12 1 6.5915 2.1081 -2.9519 13 16 2.4122 2.1202 1.4287 14 8 1.5790 1.5406 2.4233 15 8 2.4489 3.5155 1.1621 16 7 3.9631 1.6741 1.8000 17 6 4.2660 0.2780 2.1247 18 1 3.5437 -0.3741 1.6337 19 6 4.1864 0.0779 3.6395 20 6 5.6755 -0.0646 1.6384 21 1 6.3978 0.5876 2.1294 22 6 5.7551 0.1355 0.1236 23 6 5.9873 -1.5005 1.9729 24 6 5.1980 -2.5155 1.4653 25 6 5.4865 -3.8329 1.7686 26 6 6.5589 -4.1348 2.5870 27 6 7.3451 -3.1196 3.0988 28 6 7.0591 -1.8023 2.7920 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3267 1.8568 -1.9221 35 1 2.1546 3.1810 -1.0681 36 1 3.3940 3.7567 -4.4136 37 1 4.6711 2.3371 1.8025 38 1 3.2125 0.4095 3.9992 39 1 4.3201 -0.9782 3.8740 40 1 4.9702 0.6598 4.1245 41 1 5.5298 1.1742 -0.1180 42 1 5.0328 -0.5166 -0.3674 43 1 6.7594 -0.1081 -0.2229 44 1 4.3576 -2.2794 0.8293 45 1 4.8725 -4.6262 1.3685 46 1 6.7828 -5.1639 2.8262 47 1 8.1832 -3.3554 3.7379 48 1 7.6734 -1.0091 3.1919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337056704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -67.394048 kcal Electronic energy + Delta-G solvation = -29685.381790 eV Core-core repulsion = 25866.416882 eV Total energy + Delta-G solvation = -3818.964907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75342 -37.14849 -36.47594 -36.00590 -35.17667 -32.80672 -32.68514 -30.95388 -29.93841 -29.31131 -29.08500 -26.61438 -23.96417 -23.19458 -22.81956 -22.18194 -21.66496 -20.02450 -18.94788 -17.23807 -16.80420 -16.61640 -16.36983 -16.17600 -15.35742 -15.07006 -14.74079 -14.39627 -13.92381 -13.77148 -13.75493 -13.40636 -13.39824 -13.11143 -12.94655 -12.81503 -12.34802 -12.07729 -11.99359 -11.91502 -11.68635 -11.61366 -11.42690 -11.40435 -11.34360 -11.25796 -11.04537 -11.01753 -10.96086 -10.64869 -10.61458 -10.41811 -10.23634 -10.04282 -9.61182 -9.25899 -8.95965 -8.63883 -8.47337 -8.03945 -6.08972 -4.14684 1.27103 1.35979 1.37820 3.25374 3.31480 3.32126 3.51080 3.75526 4.17846 4.36977 4.62206 4.73234 4.94010 4.94701 5.01181 5.10192 5.12515 5.22524 5.25923 5.40455 5.46524 5.48440 5.62377 5.63682 5.76906 5.78559 5.82441 5.90154 5.99774 6.01848 6.10496 6.17665 6.20028 6.29163 6.36458 6.38960 6.46477 6.50075 6.62914 6.66738 6.68945 6.75534 6.96688 7.24414 7.42253 7.49929 7.70376 7.89182 8.19143 8.90700 9.50936 10.99384 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.005123 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.447997 B = 5464.581574 C = 6893.854385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.541 4.541 6 H 0.072 0.928 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 S 2.784 3.216 14 O -0.998 6.998 15 O -0.979 6.979 16 N -1.121 6.121 17 C 0.165 3.835 18 H 0.082 0.918 19 C -0.170 4.170 20 C -0.058 4.058 21 H 0.081 0.919 22 C -0.149 4.149 23 C -0.063 4.063 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.055 0.945 36 H 0.264 0.736 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -12.303 11.758 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.581 4.581 6 H 0.090 0.910 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.200 1.200 13 S 2.792 3.208 14 O -0.981 6.981 15 O -0.964 6.964 16 N -0.879 5.879 17 C 0.057 3.943 18 H 0.100 0.900 19 C -0.229 4.229 20 C -0.077 4.077 21 H 0.100 0.900 22 C -0.206 4.206 23 C -0.064 4.064 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.246 0.754 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.632 -11.708 12.103 17.465 hybrid contribution 1.571 -0.259 -0.922 1.840 sum 6.203 -11.967 11.181 17.513 Atomic orbital electron populations 1.22212 0.96842 1.01345 1.02597 1.21049 0.93898 0.83147 1.01718 1.57724 1.78571 1.22716 1.24175 1.19195 0.97204 0.92525 0.78765 1.21698 1.06104 1.20846 1.09408 0.90952 1.24942 0.96965 0.94813 0.97086 1.69927 1.37730 1.24032 1.21140 0.86725 0.84162 0.78475 0.79054 1.20234 1.21352 1.20024 1.01798 0.72981 0.73056 0.72987 1.93544 1.66056 1.79741 1.58803 1.93595 1.86486 1.30902 1.85386 1.56113 1.29630 1.15762 1.86356 1.20696 0.96451 0.81924 0.95217 0.90020 1.22350 1.03075 1.01884 0.95632 1.20505 0.96678 0.92301 0.98266 0.90030 1.22026 1.01543 1.04517 0.92542 1.19818 0.95140 0.95030 0.96366 1.21101 0.99810 0.92437 0.99868 1.21139 0.97575 0.96457 0.98319 1.21098 0.96090 0.99004 0.98602 1.21091 0.99636 0.92939 1.00210 1.21055 0.97515 0.96483 0.98497 0.92384 0.92043 0.92470 0.90154 0.92359 0.94889 0.92754 0.92633 0.75396 0.91123 0.91838 0.92427 0.89882 0.91808 0.93151 0.85799 0.86186 0.86503 0.86438 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.11 5.78 -4.04 -0.02 2.09 16 3 N -0.99 -19.50 2.83 -115.67 -0.33 -19.83 16 4 C 0.25 5.89 5.44 -5.20 -0.03 5.86 16 5 C -0.54 -13.46 9.32 -34.44 -0.32 -13.78 16 6 H 0.07 1.65 5.00 -52.49 -0.26 1.39 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 9 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 13 S 2.78 53.84 6.00 -107.50 -0.64 53.19 16 14 O -1.00 -19.80 16.13 -57.17 -0.92 -20.72 16 15 O -0.98 -22.74 16.56 -57.17 -0.95 -23.69 16 16 N -1.12 -17.39 4.78 -4.89 -0.02 -17.41 16 17 C 0.16 2.21 2.17 -67.93 -0.15 2.07 16 18 H 0.08 1.11 4.86 -51.93 -0.25 0.86 16 19 C -0.17 -2.11 9.17 37.16 0.34 -1.77 16 20 C -0.06 -0.71 2.25 -91.77 -0.21 -0.92 16 21 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 22 C -0.15 -2.19 7.84 37.16 0.29 -1.90 16 23 C -0.06 -0.73 3.61 -104.63 -0.38 -1.11 16 24 C -0.11 -1.31 8.71 -39.58 -0.34 -1.65 16 25 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 26 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.12 -1.23 9.67 -39.58 -0.38 -1.61 16 29 H 0.06 0.94 7.97 -51.93 -0.41 0.52 16 30 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 33 H 0.06 0.84 5.74 -51.93 -0.30 0.54 16 34 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.05 1.47 6.80 -51.93 -0.35 1.12 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.41 5.85 8.81 -34.47 -0.30 5.55 16 38 H 0.07 0.98 7.36 -51.93 -0.38 0.60 16 39 H 0.06 0.73 7.41 -51.93 -0.38 0.34 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.39 6.73 -51.93 -0.35 1.05 16 42 H 0.06 0.97 6.77 -51.93 -0.35 0.61 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.12 1.39 7.11 -52.49 -0.37 1.01 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 48 H 0.12 1.08 7.95 -52.49 -0.42 0.66 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -31.10 391.87 -10.84 -41.94 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.49 Total: 7.91 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.11 Total: -18.14 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.39 Total: -61.68 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -1.87 Total: -44.41 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 53.84 SS G_CDS: -0.64 Total: 53.19 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.10 -10.84 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.451 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds