Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47052 * 2 1 4 4 C 1.46498 * 120.00355 * 275.00418 * 3 2 1 5 5 C 1.50695 * 109.47104 * 278.50659 * 4 3 2 6 6 H 1.08002 * 120.00246 * 5.24251 * 5 4 3 7 7 C 1.37879 * 120.00342 * 185.23999 * 5 4 3 8 8 N 1.31520 * 119.99908 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00285 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47490 * 60.00008 * 9 7 5 11 11 H 1.48500 * 109.47445 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47227 * 299.99829 * 9 7 5 13 13 S 1.65599 * 119.99943 * 94.99999 * 3 2 1 14 14 O 1.42103 * 106.40346 * 330.23165 * 13 3 2 15 15 O 1.42104 * 106.40650 * 197.30799 * 13 3 2 16 16 N 1.65603 * 107.21701 * 83.76781 * 13 3 2 17 17 C 1.46495 * 120.00103 * 293.73092 * 16 13 3 18 18 H 1.08998 * 109.47191 * 27.05340 * 17 16 13 19 19 C 1.53004 * 109.46876 * 267.05769 * 17 16 13 20 20 C 1.52995 * 109.47483 * 147.05939 * 17 16 13 21 21 H 1.08998 * 109.47396 * 59.99526 * 20 17 16 22 22 C 1.53004 * 109.46926 * 299.99800 * 20 17 16 23 23 C 1.50698 * 109.47389 * 179.97438 * 20 17 16 24 24 C 1.38230 * 120.00066 * 59.72553 * 23 20 17 25 25 C 1.38239 * 120.00175 * 179.78872 * 24 23 20 26 26 C 1.38236 * 119.99590 * 0.44183 * 25 24 23 27 27 C 1.38228 * 120.00257 * 359.80984 * 26 25 24 28 28 C 1.38238 * 119.99815 * 239.99969 * 23 20 17 29 29 H 1.09002 * 109.46830 * 299.99439 * 1 2 3 30 30 H 1.08994 * 109.47440 * 60.00019 * 1 2 3 31 31 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46830 * 240.00560 * 2 1 3 33 33 H 1.09000 * 109.47467 * 120.00414 * 2 1 3 34 34 H 1.09002 * 109.47185 * 38.50839 * 4 3 2 35 35 H 1.08996 * 109.47200 * 158.50659 * 4 3 2 36 36 H 0.96995 * 120.00243 * 179.97438 * 8 7 5 37 37 H 0.96999 * 119.99922 * 113.72336 * 16 13 3 38 38 H 1.08991 * 109.47427 * 54.78175 * 19 17 16 39 39 H 1.09003 * 109.47266 * 174.78346 * 19 17 16 40 40 H 1.09002 * 109.47237 * 294.78141 * 19 17 16 41 41 H 1.08995 * 109.47013 * 60.00218 * 22 20 17 42 42 H 1.08998 * 109.46860 * 300.00055 * 22 20 17 43 43 H 1.09000 * 109.47367 * 179.97438 * 22 20 17 44 44 H 1.08002 * 120.00198 * 359.97438 * 24 23 20 45 45 H 1.08001 * 120.00513 * 180.27141 * 25 24 23 46 46 H 1.07999 * 119.99806 * 179.83088 * 26 25 24 47 47 H 1.08003 * 120.00555 * 180.02562 * 27 26 25 48 48 H 1.08001 * 120.00200 * 359.97230 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4566 1.7231 -1.9244 6 1 4.0715 0.9464 -1.4943 7 6 3.8595 2.3617 -3.0781 8 7 3.1104 3.3072 -3.6023 9 14 5.4686 1.8832 -3.8973 10 1 5.4225 0.4488 -4.2788 11 1 5.6714 2.7127 -5.1122 12 1 6.5915 2.1081 -2.9519 13 16 2.4122 2.1202 1.4287 14 8 1.5790 1.5406 2.4233 15 8 2.4489 3.5155 1.1621 16 7 3.9631 1.6741 1.8000 17 6 4.2660 0.2780 2.1247 18 1 3.5437 -0.3741 1.6337 19 6 4.1864 0.0779 3.6395 20 6 5.6755 -0.0646 1.6384 21 1 6.3978 0.5876 2.1294 22 6 5.7551 0.1355 0.1236 23 6 5.9873 -1.5005 1.9729 24 6 5.1980 -2.5155 1.4653 25 6 5.4865 -3.8329 1.7686 26 6 6.5589 -4.1348 2.5870 27 6 7.3451 -3.1196 3.0988 28 6 7.0591 -1.8023 2.7920 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.3267 1.8568 -1.9221 35 1 2.1546 3.1810 -1.0681 36 1 3.3940 3.7567 -4.4136 37 1 4.6711 2.3371 1.8025 38 1 3.2125 0.4095 3.9992 39 1 4.3201 -0.9782 3.8740 40 1 4.9702 0.6598 4.1245 41 1 5.5298 1.1742 -0.1180 42 1 5.0328 -0.5166 -0.3674 43 1 6.7594 -0.1081 -0.2229 44 1 4.3576 -2.2794 0.8293 45 1 4.8725 -4.6262 1.3685 46 1 6.7828 -5.1639 2.8262 47 1 8.1832 -3.3554 3.7379 48 1 7.6734 -1.0091 3.1919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337056704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = -86.546145 kcal Electronic energy + Delta-G solvation = -29686.212287 eV Core-core repulsion = 25866.416882 eV Total energy + Delta-G solvation = -3819.795405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60099 -38.42799 -37.91238 -37.57889 -36.84883 -34.63738 -33.85342 -31.69430 -31.49957 -30.41954 -30.01666 -28.44799 -25.11265 -24.77312 -23.71235 -23.24288 -23.02601 -21.03275 -20.37882 -18.65102 -18.48190 -18.22305 -17.60278 -17.45688 -16.72793 -16.21209 -15.94459 -15.64922 -15.36265 -14.95070 -14.86885 -14.70882 -14.56112 -14.26201 -14.07220 -13.86610 -13.76158 -13.59821 -13.36706 -13.33874 -13.10038 -12.99541 -12.92636 -12.81569 -12.72160 -12.68469 -12.54120 -12.32081 -12.12323 -12.02604 -12.01269 -11.75430 -11.59268 -11.47743 -11.19634 -10.56006 -10.45760 -9.73130 -9.70896 -9.46600 -8.11148 -6.22614 -0.24032 0.55169 0.61098 1.44673 1.45474 1.52169 2.03022 2.45631 2.65221 2.98009 3.21582 3.46131 3.62079 3.84125 3.91996 4.10822 4.20449 4.24793 4.27149 4.38520 4.43902 4.48153 4.53876 4.60481 4.66545 4.73237 4.75788 4.85038 4.92030 4.99074 5.05512 5.09773 5.17385 5.20465 5.27578 5.32046 5.36000 5.38273 5.43031 5.49762 5.58707 5.69910 5.73579 5.83338 5.85273 5.94773 6.19368 6.20738 6.24508 6.91827 7.47100 8.97557 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.005123 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.447997 B = 5464.581574 C = 6893.854385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.993 5.993 4 C 0.260 3.740 5 C -0.537 4.537 6 H 0.092 0.908 7 C 0.011 3.989 8 N -0.933 5.933 9 Si 0.948 3.052 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.263 1.263 13 S 2.796 3.204 14 O -1.002 7.002 15 O -1.022 7.022 16 N -1.111 6.111 17 C 0.159 3.841 18 H 0.080 0.920 19 C -0.164 4.164 20 C -0.046 4.046 21 H 0.095 0.905 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.132 4.132 27 C -0.124 4.124 28 C -0.123 4.123 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.262 0.738 37 H 0.420 0.580 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.120 0.880 45 H 0.134 0.866 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 -15.057 13.135 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.576 4.576 6 H 0.110 0.890 7 C -0.188 4.188 8 N -0.574 5.574 9 Si 0.773 3.227 10 H -0.190 1.190 11 H -0.220 1.220 12 H -0.188 1.188 13 S 2.805 3.195 14 O -0.986 6.986 15 O -1.007 7.007 16 N -0.872 5.872 17 C 0.053 3.947 18 H 0.098 0.902 19 C -0.223 4.223 20 C -0.066 4.066 21 H 0.114 0.886 22 C -0.205 4.205 23 C -0.076 4.076 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.150 4.150 27 C -0.142 4.142 28 C -0.141 4.141 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.255 0.745 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.152 0.848 46 H 0.157 0.843 47 H 0.158 0.842 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.617 -14.492 13.504 20.885 hybrid contribution 0.944 0.501 -1.263 1.655 sum 7.562 -13.991 12.241 20.069 Atomic orbital electron populations 1.22202 0.96003 1.03202 1.01403 1.21331 0.94722 0.81441 1.03057 1.57595 1.79335 1.23879 1.22610 1.18719 0.96589 0.90914 0.80121 1.22093 1.06156 1.20468 1.08862 0.88999 1.25764 1.00150 0.94878 0.98032 1.70079 1.39777 1.25720 1.21775 0.85760 0.80567 0.78456 0.77897 1.19011 1.22011 1.18814 1.01224 0.73668 0.71932 0.72695 1.93533 1.66899 1.79516 1.58607 1.93535 1.87370 1.33862 1.85927 1.55804 1.28382 1.17189 1.85874 1.20926 0.97351 0.80222 0.96249 0.90241 1.22284 1.02654 1.02929 0.94460 1.20369 0.96042 0.93601 0.96594 0.88640 1.21961 1.01556 1.02593 0.94413 1.19728 0.96127 0.94142 0.97589 1.21204 1.00066 0.93187 1.00374 1.21377 0.98109 0.96357 0.98443 1.21432 0.95492 1.00260 0.97797 1.21407 1.00134 0.92557 1.00100 1.21262 0.97209 0.97472 0.98161 0.93362 0.93423 0.89104 0.89833 0.89927 0.96586 0.96470 0.92929 0.74492 0.92749 0.90544 0.91007 0.92309 0.92631 0.92593 0.86248 0.84763 0.84347 0.84249 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 10.24 71.98 0.74 -4.34 16 2 C 0.12 3.85 5.78 86.38 0.50 4.35 16 3 N -0.99 -39.64 2.83 -519.86 -1.47 -41.11 16 4 C 0.26 12.95 5.44 85.63 0.47 13.41 16 5 C -0.54 -26.97 9.32 25.60 0.24 -26.73 16 6 H 0.09 4.16 5.00 -2.91 -0.01 4.14 16 7 C 0.01 0.56 5.46 84.65 0.46 1.03 16 8 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 9 Si 0.95 41.58 29.54 68.60 2.03 43.60 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 13 S 2.80 109.27 6.00 -56.49 -0.34 108.94 16 14 O -1.00 -39.44 16.13 -128.00 -2.07 -41.51 16 15 O -1.02 -49.12 16.56 -128.00 -2.12 -51.24 16 16 N -1.11 -33.79 4.78 -169.40 -0.81 -34.60 16 17 C 0.16 4.02 2.17 44.99 0.10 4.12 16 18 H 0.08 2.04 4.86 -2.39 -0.01 2.03 16 19 C -0.16 -3.71 9.17 71.98 0.66 -3.05 16 20 C -0.05 -1.05 2.25 -11.54 -0.03 -1.07 16 21 H 0.10 1.90 7.88 -2.39 -0.02 1.88 16 22 C -0.15 -4.13 7.84 71.98 0.56 -3.57 16 23 C -0.08 -1.56 3.61 -19.87 -0.07 -1.63 16 24 C -0.13 -2.71 8.71 22.27 0.19 -2.51 16 25 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 26 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 27 C -0.12 -1.95 10.05 22.27 0.22 -1.72 16 28 C -0.12 -2.19 9.67 22.27 0.22 -1.98 16 29 H 0.05 1.53 7.97 -2.39 -0.02 1.51 16 30 H 0.05 1.54 8.11 -2.39 -0.02 1.52 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 33 H 0.08 2.26 5.74 -2.39 -0.01 2.24 16 34 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 35 H 0.02 0.99 6.80 -2.39 -0.02 0.97 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.42 11.68 8.81 -96.74 -0.85 10.83 16 38 H 0.05 1.42 7.36 -2.39 -0.02 1.40 16 39 H 0.08 1.54 7.41 -2.39 -0.02 1.53 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.91 6.73 -2.39 -0.02 1.90 16 42 H 0.05 1.61 6.77 -2.39 -0.02 1.59 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.12 2.49 7.11 -2.91 -0.02 2.47 16 45 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 47 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 48 H 0.13 1.94 7.95 -2.91 -0.02 1.91 16 Total: -1.00 -67.92 391.87 0.32 -67.61 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.11 Total: 29.92 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 4.71 Total: -27.54 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -2.00 Total: -129.77 kcal Atomic # 8 Polarization: -88.57 SS G_CDS: -4.18 Total: -92.75 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 109.27 SS G_CDS: -0.34 Total: 108.94 kcal Total: -67.92 0.32 -67.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.940 kcal (2) G-P(sol) polarization free energy of solvation -67.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds