Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47088 * 2 1 4 4 C 1.46493 * 120.00100 * 278.50656 * 3 2 1 5 5 C 1.50694 * 109.47554 * 274.65637 * 4 3 2 6 6 H 1.08004 * 119.99766 * 4.95519 * 5 4 3 7 7 C 1.37878 * 120.00225 * 184.95502 * 5 4 3 8 8 N 1.31510 * 120.00020 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47537 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47085 * 120.00051 * 9 7 5 12 12 H 1.48500 * 109.47345 * 240.00025 * 9 7 5 13 13 S 1.65606 * 119.99752 * 98.50842 * 3 2 1 14 14 O 1.42097 * 106.40093 * 354.88408 * 13 3 2 15 15 O 1.42102 * 106.40189 * 221.95871 * 13 3 2 16 16 N 1.65601 * 107.21659 * 108.42131 * 13 3 2 17 17 C 1.46506 * 119.99963 * 279.71186 * 16 13 3 18 18 C 1.53001 * 109.47031 * 156.14044 * 17 16 13 19 19 C 1.53001 * 109.47025 * 36.14020 * 17 16 13 20 20 C 1.50701 * 109.46890 * 276.14227 * 17 16 13 21 21 C 1.38257 * 120.00077 * 349.16732 * 20 17 16 22 22 C 1.38217 * 120.00264 * 180.02562 * 21 20 17 23 23 C 1.38254 * 119.99588 * 359.96025 * 22 21 20 24 24 C 1.38210 * 120.00121 * 0.13181 * 23 22 21 25 25 C 1.50709 * 120.00110 * 179.97438 * 24 23 22 26 26 C 1.38210 * 119.99864 * 169.19422 * 20 17 16 27 27 H 1.09001 * 109.47317 * 299.99988 * 1 2 3 28 28 H 1.09002 * 109.47157 * 59.99738 * 1 2 3 29 29 H 1.09004 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47317 * 240.00012 * 2 1 3 31 31 H 1.09002 * 109.47157 * 120.00262 * 2 1 3 32 32 H 1.09002 * 109.47109 * 34.65773 * 4 3 2 33 33 H 1.08997 * 109.46990 * 154.65126 * 4 3 2 34 34 H 0.96996 * 119.99823 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00336 * 99.70904 * 16 13 3 36 36 H 1.09003 * 109.46683 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47133 * 299.99589 * 18 17 16 38 38 H 1.09002 * 109.46708 * 60.00033 * 18 17 16 39 39 H 1.08996 * 109.47225 * 291.62000 * 19 17 16 40 40 H 1.08997 * 109.47315 * 51.62096 * 19 17 16 41 41 H 1.08998 * 109.47060 * 171.62472 * 19 17 16 42 42 H 1.08006 * 119.99953 * 359.97438 * 21 20 17 43 43 H 1.07997 * 120.00327 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99885 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46874 * 269.91161 * 25 24 23 46 46 H 1.09004 * 109.46917 * 29.91015 * 25 24 23 47 47 H 1.08995 * 109.47028 * 149.91093 * 25 24 23 48 48 H 1.07999 * 119.99874 * 359.70041 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0855 2.1344 -1.2547 5 6 3.3876 1.8346 -1.9515 6 1 4.0586 1.0918 -1.5459 7 6 3.7224 2.5084 -3.1069 8 7 2.9052 3.4125 -3.6011 9 14 5.3368 2.1372 -3.9702 10 1 6.0704 1.0876 -3.2182 11 1 5.0622 1.6573 -5.3484 12 1 6.1610 3.3710 -4.0306 13 16 2.4944 2.0911 1.4184 14 8 2.1991 1.1611 2.4514 15 8 1.9818 3.4163 1.3957 16 7 4.1441 2.2270 1.3691 17 6 4.9842 1.0681 1.6815 18 6 6.3533 1.2374 1.0198 19 6 4.3163 -0.2032 1.1536 20 6 5.1576 0.9614 3.1747 21 6 4.7532 1.9995 3.9935 22 6 4.9127 1.9019 5.3630 23 6 5.4759 0.7659 5.9141 24 6 5.8819 -0.2710 5.0954 25 6 6.4964 -1.5091 5.6960 26 6 5.7214 -0.1739 3.7256 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2543 1.8445 -1.8975 33 1 2.0248 3.2016 -1.0415 34 1 3.1409 3.8868 -4.4137 35 1 4.5542 3.0738 1.1332 36 1 6.9784 0.3754 1.2527 37 1 6.2278 1.3145 -0.0602 38 1 6.8290 2.1431 1.3960 39 1 3.4128 -0.4048 1.7290 40 1 4.0558 -0.0677 0.1039 41 1 5.0044 -1.0428 1.2518 42 1 4.3134 2.8870 3.5630 43 1 4.5972 2.7129 6.0026 44 1 5.6002 0.6894 6.9842 45 1 7.5770 -1.3826 5.7628 46 1 6.0872 -1.6706 6.6934 47 1 6.2694 -2.3694 5.0665 48 1 6.0332 -0.9865 3.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337081391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -57.270693 kcal Electronic energy + Delta-G solvation = -29956.783343 eV Core-core repulsion = 26138.257418 eV Total energy + Delta-G solvation = -3818.525926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.80579 -37.14540 -36.30607 -36.02346 -35.17516 -32.75534 -32.47827 -31.18530 -29.91709 -29.28423 -27.33032 -26.74465 -26.58767 -23.32270 -23.01469 -21.68648 -21.35200 -19.90891 -18.42807 -17.23136 -17.01838 -16.49905 -16.36070 -15.89115 -15.25086 -15.08457 -14.59083 -14.13556 -13.96182 -13.83379 -13.71596 -13.36167 -13.12728 -13.00640 -12.79924 -12.61408 -12.33584 -12.21246 -11.99174 -11.89337 -11.78295 -11.74392 -11.53313 -11.45696 -11.44505 -11.27451 -11.06590 -10.96848 -10.89703 -10.78994 -10.62837 -10.43603 -10.30967 -10.03496 -9.74249 -9.18499 -8.64038 -8.53744 -8.43268 -8.02268 -6.14263 -4.20876 1.36312 1.50367 1.52853 3.20426 3.29207 3.30384 3.56682 3.87180 4.13964 4.32741 4.75386 4.87285 4.95548 5.06362 5.11947 5.18654 5.19688 5.22829 5.35095 5.47621 5.51240 5.54474 5.60623 5.69363 5.76160 5.77239 5.81926 5.83362 5.99998 6.03225 6.10604 6.14834 6.20156 6.28503 6.33517 6.43513 6.51457 6.63701 6.65179 6.67776 6.70305 6.84994 7.14490 7.29445 7.39993 7.49842 7.68987 7.84618 8.13018 8.85341 9.45403 10.93507 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.004619 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.017130 B = 6060.668939 C = 6945.084556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.994 5.994 4 C 0.247 3.753 5 C -0.535 4.535 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 S 2.788 3.212 14 O -0.991 6.991 15 O -0.991 6.991 16 N -1.111 6.111 17 C 0.232 3.768 18 C -0.147 4.147 19 C -0.206 4.206 20 C -0.070 4.070 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.090 4.090 25 C -0.111 4.111 26 C -0.111 4.111 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.032 -8.255 13.432 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 N -0.835 5.835 4 C 0.125 3.875 5 C -0.574 4.574 6 H 0.084 0.916 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 S 2.796 3.204 14 O -0.975 6.975 15 O -0.975 6.975 16 N -0.868 5.868 17 C 0.143 3.857 18 C -0.205 4.205 19 C -0.264 4.264 20 C -0.072 4.072 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.090 4.090 25 C -0.168 4.168 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.248 0.752 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.341 -8.004 14.021 17.006 hybrid contribution 1.239 0.286 -1.152 1.715 sum 6.580 -7.718 12.870 16.386 Atomic orbital electron populations 1.22190 0.97168 1.01274 1.02150 1.21231 0.93538 0.83294 1.02746 1.57720 1.78040 1.22475 1.25314 1.19119 0.97530 0.91296 0.79550 1.21619 1.04431 1.22358 1.09042 0.91564 1.24965 0.96984 0.94877 0.97137 1.69945 1.36311 1.24781 1.21743 0.86556 0.83677 0.78201 0.79620 1.19619 1.21057 1.20995 1.01685 0.72639 0.72965 0.73115 1.93531 1.84129 1.64208 1.55653 1.93579 1.77656 1.38792 1.87436 1.56004 1.26166 1.18960 1.85636 1.18660 0.91951 0.85766 0.89319 1.22086 0.94243 1.02117 1.02084 1.23024 1.02911 0.96293 1.04133 1.20245 0.97288 0.94101 0.95573 1.20921 0.99608 0.98702 0.93350 1.21079 0.99309 0.97936 0.94990 1.20928 1.00611 0.93947 0.99156 1.19821 0.99498 0.96147 0.93576 1.20757 1.00298 0.94998 1.00733 1.20760 1.00482 0.97493 0.94203 0.93264 0.92011 0.92302 0.90453 0.90332 0.94676 0.93795 0.92666 0.75152 0.91668 0.90400 0.92151 0.89423 0.88849 0.90772 0.86769 0.86338 0.86569 0.91485 0.91812 0.91638 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.21 37.16 0.38 -2.28 16 2 C 0.12 2.02 4.66 -4.04 -0.02 2.00 16 3 N -0.99 -19.94 2.09 -115.67 -0.24 -20.18 16 4 C 0.25 5.91 5.42 -5.20 -0.03 5.88 16 5 C -0.54 -13.17 9.38 -34.44 -0.32 -13.49 16 6 H 0.07 1.55 6.37 -52.48 -0.33 1.21 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 9 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 S 2.79 55.42 5.22 -107.50 -0.56 54.86 16 14 O -0.99 -19.75 13.33 -57.17 -0.76 -20.51 16 15 O -0.99 -23.20 17.22 -57.17 -0.98 -24.18 16 16 N -1.11 -18.91 4.04 -0.40 0.00 -18.91 16 17 C 0.23 3.48 0.90 -132.97 -0.12 3.36 16 18 C -0.15 -1.96 8.55 37.16 0.32 -1.64 16 19 C -0.21 -3.03 6.11 37.16 0.23 -2.81 16 20 C -0.07 -1.03 4.22 -104.62 -0.44 -1.48 16 21 C -0.11 -1.64 8.70 -39.58 -0.34 -1.98 16 22 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.13 -1.56 9.70 -39.59 -0.38 -1.94 16 24 C -0.09 -1.08 5.88 -104.62 -0.62 -1.70 16 25 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 26 C -0.11 -1.44 8.60 -39.58 -0.34 -1.78 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.02 7.86 -51.93 -0.41 0.61 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.08 1.24 4.85 -51.93 -0.25 0.99 16 32 H 0.04 0.88 7.82 -51.93 -0.41 0.47 16 33 H 0.04 1.17 7.31 -51.93 -0.38 0.79 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.42 6.69 8.73 -34.47 -0.30 6.39 16 36 H 0.06 0.74 7.99 -51.93 -0.42 0.32 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.38 4.17 -51.93 -0.22 1.16 16 40 H 0.09 1.50 5.15 -51.93 -0.27 1.23 16 41 H 0.07 0.89 7.21 -51.93 -0.37 0.52 16 42 H 0.11 1.77 6.84 -52.48 -0.36 1.41 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 47 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 48 H 0.12 1.34 7.11 -52.49 -0.37 0.96 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -30.99 384.75 -10.31 -41.29 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.44 Total: 9.78 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.83 Total: -18.84 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.49 Total: -63.08 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.75 Total: -44.69 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.56 Total: 54.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.99 -10.31 -41.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337081391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.977 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds