Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47088 * 2 1 4 4 C 1.46493 * 120.00100 * 278.50656 * 3 2 1 5 5 C 1.50694 * 109.47554 * 274.65637 * 4 3 2 6 6 H 1.08004 * 119.99766 * 4.95519 * 5 4 3 7 7 C 1.37878 * 120.00225 * 184.95502 * 5 4 3 8 8 N 1.31510 * 120.00020 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99798 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47537 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47085 * 120.00051 * 9 7 5 12 12 H 1.48500 * 109.47345 * 240.00025 * 9 7 5 13 13 S 1.65606 * 119.99752 * 98.50842 * 3 2 1 14 14 O 1.42097 * 106.40093 * 354.88408 * 13 3 2 15 15 O 1.42102 * 106.40189 * 221.95871 * 13 3 2 16 16 N 1.65601 * 107.21659 * 108.42131 * 13 3 2 17 17 C 1.46506 * 119.99963 * 279.71186 * 16 13 3 18 18 C 1.53001 * 109.47031 * 156.14044 * 17 16 13 19 19 C 1.53001 * 109.47025 * 36.14020 * 17 16 13 20 20 C 1.50701 * 109.46890 * 276.14227 * 17 16 13 21 21 C 1.38257 * 120.00077 * 349.16732 * 20 17 16 22 22 C 1.38217 * 120.00264 * 180.02562 * 21 20 17 23 23 C 1.38254 * 119.99588 * 359.96025 * 22 21 20 24 24 C 1.38210 * 120.00121 * 0.13181 * 23 22 21 25 25 C 1.50709 * 120.00110 * 179.97438 * 24 23 22 26 26 C 1.38210 * 119.99864 * 169.19422 * 20 17 16 27 27 H 1.09001 * 109.47317 * 299.99988 * 1 2 3 28 28 H 1.09002 * 109.47157 * 59.99738 * 1 2 3 29 29 H 1.09004 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47317 * 240.00012 * 2 1 3 31 31 H 1.09002 * 109.47157 * 120.00262 * 2 1 3 32 32 H 1.09002 * 109.47109 * 34.65773 * 4 3 2 33 33 H 1.08997 * 109.46990 * 154.65126 * 4 3 2 34 34 H 0.96996 * 119.99823 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00336 * 99.70904 * 16 13 3 36 36 H 1.09003 * 109.46683 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47133 * 299.99589 * 18 17 16 38 38 H 1.09002 * 109.46708 * 60.00033 * 18 17 16 39 39 H 1.08996 * 109.47225 * 291.62000 * 19 17 16 40 40 H 1.08997 * 109.47315 * 51.62096 * 19 17 16 41 41 H 1.08998 * 109.47060 * 171.62472 * 19 17 16 42 42 H 1.08006 * 119.99953 * 359.97438 * 21 20 17 43 43 H 1.07997 * 120.00327 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.99885 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46874 * 269.91161 * 25 24 23 46 46 H 1.09004 * 109.46917 * 29.91015 * 25 24 23 47 47 H 1.08995 * 109.47028 * 149.91093 * 25 24 23 48 48 H 1.07999 * 119.99874 * 359.70041 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0855 2.1344 -1.2547 5 6 3.3876 1.8346 -1.9515 6 1 4.0586 1.0918 -1.5459 7 6 3.7224 2.5084 -3.1069 8 7 2.9052 3.4125 -3.6011 9 14 5.3368 2.1372 -3.9702 10 1 6.0704 1.0876 -3.2182 11 1 5.0622 1.6573 -5.3484 12 1 6.1610 3.3710 -4.0306 13 16 2.4944 2.0911 1.4184 14 8 2.1991 1.1611 2.4514 15 8 1.9818 3.4163 1.3957 16 7 4.1441 2.2270 1.3691 17 6 4.9842 1.0681 1.6815 18 6 6.3533 1.2374 1.0198 19 6 4.3163 -0.2032 1.1536 20 6 5.1576 0.9614 3.1747 21 6 4.7532 1.9995 3.9935 22 6 4.9127 1.9019 5.3630 23 6 5.4759 0.7659 5.9141 24 6 5.8819 -0.2710 5.0954 25 6 6.4964 -1.5091 5.6960 26 6 5.7214 -0.1739 3.7256 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.2543 1.8445 -1.8975 33 1 2.0248 3.2016 -1.0415 34 1 3.1409 3.8868 -4.4137 35 1 4.5542 3.0738 1.1332 36 1 6.9784 0.3754 1.2527 37 1 6.2278 1.3145 -0.0602 38 1 6.8290 2.1431 1.3960 39 1 3.4128 -0.4048 1.7290 40 1 4.0558 -0.0677 0.1039 41 1 5.0044 -1.0428 1.2518 42 1 4.3134 2.8870 3.5630 43 1 4.5972 2.7129 6.0026 44 1 5.6002 0.6894 6.9842 45 1 7.5770 -1.3826 5.7628 46 1 6.0872 -1.6706 6.6934 47 1 6.2694 -2.3694 5.0665 48 1 6.0332 -0.9865 3.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337081391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -76.015616 kcal Electronic energy + Delta-G solvation = -29957.596184 eV Core-core repulsion = 26138.257418 eV Total energy + Delta-G solvation = -3819.338767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84618 -38.53242 -37.82365 -37.52530 -36.86367 -34.66842 -33.37312 -32.41260 -31.48125 -30.36261 -28.59762 -28.25862 -27.57952 -24.92910 -24.19876 -23.24080 -22.34974 -21.11030 -19.89242 -18.78622 -18.60820 -18.21721 -17.70545 -17.24742 -16.70115 -16.15437 -16.10132 -15.55697 -15.27979 -14.90644 -14.82656 -14.63393 -14.58040 -14.19432 -13.96667 -13.88580 -13.72214 -13.57674 -13.31760 -13.20497 -13.14774 -13.02927 -12.88618 -12.77980 -12.75553 -12.66994 -12.59960 -12.57720 -12.22691 -12.07551 -11.93004 -11.85322 -11.77752 -11.58757 -11.44403 -10.59092 -10.46952 -9.73041 -9.61497 -9.41658 -8.12817 -6.25906 -0.22322 0.50719 0.54290 1.44611 1.47244 1.57647 2.04030 2.45795 2.59730 2.88797 3.19785 3.48772 3.69939 3.88357 3.93901 4.03899 4.07249 4.16726 4.29198 4.37942 4.43742 4.50390 4.57915 4.60500 4.69051 4.76366 4.79996 4.89193 4.92426 4.94323 5.00738 5.02651 5.12829 5.16963 5.22227 5.25185 5.31241 5.35746 5.41192 5.41923 5.57239 5.62427 5.74602 5.78149 5.81867 5.94308 6.15235 6.18443 6.22441 6.88523 7.44609 8.95545 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.004619 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.017130 B = 6060.668939 C = 6945.084556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.995 5.995 4 C 0.263 3.737 5 C -0.529 4.529 6 H 0.082 0.918 7 C 0.010 3.990 8 N -0.933 5.933 9 Si 0.956 3.044 10 H -0.251 1.251 11 H -0.287 1.287 12 H -0.287 1.287 13 S 2.799 3.201 14 O -0.991 6.991 15 O -1.034 7.034 16 N -1.106 6.106 17 C 0.226 3.774 18 C -0.142 4.142 19 C -0.206 4.206 20 C -0.082 4.082 21 C -0.140 4.140 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.091 4.091 25 C -0.110 4.110 26 C -0.118 4.118 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.017 0.983 33 H 0.008 0.992 34 H 0.263 0.737 35 H 0.417 0.583 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.131 0.869 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -11.161 14.692 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.836 5.836 4 C 0.139 3.861 5 C -0.568 4.568 6 H 0.100 0.900 7 C -0.189 4.189 8 N -0.573 5.573 9 Si 0.782 3.218 10 H -0.174 1.174 11 H -0.213 1.213 12 H -0.213 1.213 13 S 2.808 3.192 14 O -0.975 6.975 15 O -1.018 7.018 16 N -0.866 5.866 17 C 0.138 3.862 18 C -0.201 4.201 19 C -0.263 4.263 20 C -0.084 4.084 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.091 4.091 25 C -0.166 4.166 26 C -0.136 4.136 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.035 0.965 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.251 0.749 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.149 0.851 44 H 0.160 0.840 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.617 -10.942 15.308 20.299 hybrid contribution 0.517 1.150 -1.421 1.900 sum 8.134 -9.792 13.887 18.839 Atomic orbital electron populations 1.22205 0.96262 1.03219 1.01086 1.21494 0.94415 0.81677 1.03831 1.57612 1.78746 1.23496 1.23779 1.18679 0.97017 0.89731 0.80666 1.21898 1.04426 1.21903 1.08551 0.90010 1.25805 1.00247 0.94750 0.98108 1.70090 1.38487 1.26312 1.22398 0.85526 0.79702 0.78258 0.78313 1.17423 1.21320 1.21319 1.01155 0.73195 0.71920 0.72947 1.93521 1.84617 1.63894 1.55465 1.93516 1.79143 1.41167 1.87952 1.55811 1.25209 1.20047 1.85486 1.18933 0.92298 0.84817 0.90167 1.22069 0.93588 1.03588 1.00855 1.23023 1.03268 0.97284 1.02764 1.20251 0.98305 0.94838 0.95030 1.20998 1.01381 0.98869 0.94556 1.21330 0.99502 0.99139 0.94530 1.21286 0.99736 0.93358 1.00656 1.20262 0.98381 0.97125 0.93334 1.20821 1.00951 0.93565 1.01268 1.21034 1.00164 0.97285 0.95139 0.94026 0.93380 0.88859 0.89825 0.88654 0.96458 0.97419 0.92819 0.74908 0.89030 0.91799 0.91785 0.90562 0.90290 0.87595 0.88449 0.85125 0.84020 0.90051 0.90676 0.90707 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.22 10.21 71.98 0.73 -4.48 16 2 C 0.11 3.72 4.66 86.38 0.40 4.12 16 3 N -1.00 -40.62 2.09 -519.87 -1.09 -41.71 16 4 C 0.26 13.02 5.42 85.63 0.46 13.48 16 5 C -0.53 -26.14 9.38 25.60 0.24 -25.90 16 6 H 0.08 3.73 6.37 -2.91 -0.02 3.71 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -53.21 13.29 21.45 0.28 -52.93 16 9 Si 0.96 40.53 29.54 68.60 2.03 42.56 16 10 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 13 S 2.80 114.05 5.22 -56.49 -0.29 113.76 16 14 O -0.99 -39.60 13.33 -128.00 -1.71 -41.31 16 15 O -1.03 -50.86 17.22 -128.00 -2.20 -53.06 16 16 N -1.11 -38.11 4.04 -155.17 -0.63 -38.73 16 17 C 0.23 6.47 0.90 2.86 0.00 6.48 16 18 C -0.14 -3.49 8.55 71.98 0.62 -2.88 16 19 C -0.21 -5.62 6.11 71.98 0.44 -5.18 16 20 C -0.08 -2.31 4.22 -19.87 -0.08 -2.39 16 21 C -0.14 -4.23 8.70 22.27 0.19 -4.04 16 22 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 23 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 24 C -0.09 -1.89 5.88 -19.86 -0.12 -2.00 16 25 C -0.11 -1.47 10.01 71.24 0.71 -0.76 16 26 C -0.12 -2.72 8.60 22.27 0.19 -2.53 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.60 7.86 -2.39 -0.02 1.58 16 29 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.08 2.69 8.13 -2.39 -0.02 2.67 16 31 H 0.10 2.89 4.85 -2.39 -0.01 2.87 16 32 H 0.02 0.91 7.82 -2.39 -0.02 0.89 16 33 H 0.01 0.44 7.31 -2.39 -0.02 0.42 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.42 13.92 8.73 -96.74 -0.84 13.08 16 36 H 0.09 1.75 7.99 -2.39 -0.02 1.73 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 2.26 4.17 -2.39 -0.01 2.25 16 40 H 0.08 2.40 5.15 -2.39 -0.01 2.38 16 41 H 0.11 2.16 7.21 -2.39 -0.02 2.14 16 42 H 0.10 3.16 6.84 -2.91 -0.02 3.14 16 43 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 47 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 48 H 0.14 2.56 7.11 -2.91 -0.02 2.54 16 Total: -1.00 -68.22 384.75 1.21 -67.01 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.12 Total: 35.26 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.70 Total: -30.85 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -1.43 Total: -133.37 kcal Atomic # 8 Polarization: -90.46 SS G_CDS: -3.91 Total: -94.37 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 16 Polarization: 114.05 SS G_CDS: -0.29 Total: 113.76 kcal Total: -68.22 1.21 -67.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337081391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.004 kcal (2) G-P(sol) polarization free energy of solvation -68.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds