Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47471 * 2 1 4 4 C 1.46507 * 120.00034 * 270.00489 * 3 2 1 5 5 C 1.50702 * 109.46699 * 269.99898 * 4 3 2 6 6 H 1.08002 * 120.00190 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99974 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00089 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99776 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47042 * 90.00158 * 9 7 5 11 11 H 1.48502 * 109.46905 * 209.99788 * 9 7 5 12 12 H 1.48494 * 109.47337 * 329.99688 * 9 7 5 13 13 C 1.34778 * 120.00110 * 89.99867 * 3 2 1 14 14 O 1.21276 * 119.99825 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99764 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47001 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00376 * 190.00477 * 16 15 13 18 18 C 1.52999 * 109.46921 * 76.01149 * 17 16 15 19 19 O 1.42901 * 109.47474 * 63.96280 * 18 17 16 20 20 C 1.42899 * 114.00301 * 184.84479 * 19 18 17 21 21 C 1.46894 * 111.00209 * 66.04738 * 16 15 13 22 22 C 1.50695 * 109.47543 * 200.69891 * 21 16 15 23 23 C 1.33385 * 125.20661 * 84.17588 * 22 21 16 24 24 C 1.38421 * 114.92409 * 179.97438 * 23 22 21 25 25 C 1.33383 * 114.92182 * 359.97438 * 24 23 22 26 26 S 1.75887 * 109.59433 * 359.76125 * 25 24 23 27 27 H 1.09001 * 109.47044 * 300.00011 * 1 2 3 28 28 H 1.08999 * 109.47046 * 60.00335 * 1 2 3 29 29 H 1.09003 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47044 * 239.99989 * 2 1 3 31 31 H 1.09002 * 109.47461 * 119.99966 * 2 1 3 32 32 H 1.08996 * 109.46862 * 29.99371 * 4 3 2 33 33 H 1.08991 * 109.46951 * 149.99516 * 4 3 2 34 34 H 0.96999 * 119.99947 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46986 * 60.00780 * 15 13 3 36 36 H 1.08997 * 109.47582 * 300.00472 * 15 13 3 37 37 H 1.08991 * 109.47267 * 196.01505 * 17 16 15 38 38 H 1.09001 * 109.46846 * 316.01575 * 17 16 15 39 39 H 1.09005 * 109.47064 * 183.96458 * 18 17 16 40 40 H 1.09001 * 109.47511 * 303.96093 * 18 17 16 41 41 H 1.09001 * 109.47134 * 304.86758 * 20 19 18 42 42 H 1.08998 * 109.46964 * 64.86584 * 20 19 18 43 43 H 1.09001 * 109.47150 * 184.86897 * 20 19 18 44 44 H 1.08999 * 109.47001 * 320.69953 * 21 16 15 45 45 H 1.08996 * 109.46981 * 80.69481 * 21 16 15 46 46 H 1.08002 * 122.53880 * 359.95411 * 23 22 21 47 47 H 1.08002 * 122.53771 * 180.02562 * 24 23 22 48 48 H 1.08000 * 125.20792 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1494 2.3904 -2.8775 8 7 5.3917 2.1840 -3.2569 9 14 3.0131 3.4360 -3.9287 10 1 3.1159 4.8561 -3.5068 11 1 3.4068 3.3137 -5.3553 12 1 1.6136 2.9693 -3.7597 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2065 3.5888 17 6 2.3049 1.4821 4.8668 18 6 3.5836 0.6504 4.9856 19 8 4.7162 1.5208 5.0243 20 6 5.9727 0.8402 5.0248 21 6 1.3826 3.3459 3.6266 22 6 2.0041 4.4730 4.4103 23 6 2.8531 5.3759 3.9172 24 6 3.2938 6.3206 4.8279 25 6 2.8022 6.1853 6.0604 26 16 1.7141 4.8044 6.1132 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 5.7177 2.5745 -4.0828 35 1 2.6211 0.4187 2.5302 36 1 0.9432 1.0126 2.5298 37 1 2.2581 2.1960 5.6890 38 1 1.4377 0.8230 4.9080 39 1 3.5485 0.0588 5.9005 40 1 3.6657 -0.0147 4.1259 41 1 6.0004 0.1290 5.8504 42 1 6.0977 0.3075 4.0821 43 1 6.7784 1.5648 5.1423 44 1 1.1767 3.6806 2.6099 45 1 0.4515 3.0413 4.1044 46 1 3.1728 5.3700 2.8856 47 1 3.9828 7.1081 4.5604 48 1 3.0333 6.8281 6.8970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353325426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -24.316677 kcal Electronic energy + Delta-G solvation = -28567.822927 eV Core-core repulsion = 24750.725994 eV Total energy + Delta-G solvation = -3817.096932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62150 -38.11531 -37.55103 -36.30532 -35.22240 -32.70735 -31.10774 -30.44721 -29.88648 -28.11907 -26.60632 -26.20493 -24.57102 -22.98870 -22.73172 -22.36717 -20.93422 -18.90593 -18.37794 -17.22802 -16.89185 -16.71688 -16.45640 -15.90714 -15.58002 -15.31696 -15.08621 -14.74017 -14.50044 -14.19937 -13.87818 -13.53066 -13.43872 -12.99908 -12.86914 -12.60300 -12.50958 -12.36246 -12.26288 -12.12067 -11.98199 -11.86928 -11.72566 -11.49472 -11.42993 -11.10706 -10.95072 -10.84544 -10.67767 -10.56445 -10.47631 -10.12647 -9.52165 -9.50402 -8.95424 -8.56265 -8.46148 -8.25880 -8.16533 -7.67508 -6.05927 -4.04210 1.18874 1.80593 2.14414 3.00923 3.30279 3.35971 3.37967 3.38160 3.62279 3.89570 4.16914 4.41616 4.84743 4.91342 5.08534 5.09631 5.17228 5.19416 5.24381 5.25150 5.28098 5.35032 5.43853 5.48766 5.50948 5.54098 5.62181 5.68590 5.72930 5.79084 5.80851 5.88635 5.92910 5.94889 6.13100 6.36438 6.41468 6.65317 6.70146 6.77658 6.93264 7.03038 7.07357 7.33478 7.39599 7.64288 8.29362 8.50332 8.97270 9.05482 9.54666 11.07638 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010472 B = 0.003603 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.192400 B = 7769.425716 C = 8368.952073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.219 3.781 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.517 6.517 15 C 0.036 3.964 16 N -0.504 5.504 17 C 0.051 3.949 18 C 0.069 3.931 19 O -0.367 6.367 20 C 0.032 3.968 21 C 0.127 3.873 22 C -0.147 4.147 23 C -0.110 4.110 24 C -0.127 4.127 25 C -0.218 4.218 26 S 0.056 5.944 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.033 0.967 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.036 0.964 46 H 0.149 0.851 47 H 0.137 0.863 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 -2.861 19.105 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.393 6.393 15 C -0.095 4.095 16 N -0.228 5.228 17 C -0.077 4.077 18 C -0.009 4.009 19 O -0.285 6.285 20 C -0.065 4.065 21 C -0.002 4.002 22 C -0.265 4.265 23 C -0.140 4.140 24 C -0.158 4.158 25 C -0.353 4.353 26 S 0.318 5.682 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.126 0.874 45 H 0.054 0.946 46 H 0.167 0.833 47 H 0.154 0.846 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.600 -2.472 19.996 22.319 hybrid contribution -0.104 0.408 -1.593 1.648 sum -9.704 -2.063 18.403 20.907 Atomic orbital electron populations 1.22236 0.96877 1.01517 1.02138 1.21415 0.93268 0.84087 1.02983 1.47950 1.64578 1.13315 1.07003 1.19605 0.97220 0.93300 0.80038 1.21332 0.95346 1.32763 1.06994 0.90802 1.24849 0.94940 0.95808 0.97369 1.69900 1.15128 1.45089 1.23555 0.86868 0.81446 0.81679 0.79772 1.19927 1.21152 1.19147 1.20100 0.78645 0.87184 0.84608 1.90650 1.44088 1.17845 1.86681 1.22126 1.00173 0.96370 0.90807 1.61452 1.51923 1.07907 1.01491 1.22272 0.95246 0.97412 0.92739 1.22494 0.86714 0.92336 0.99348 1.88047 1.13042 1.32406 1.95052 1.22709 0.86532 0.97683 0.99574 1.20610 0.90942 0.88043 1.00589 1.24172 1.05272 1.01900 0.95112 1.20290 0.97305 0.94312 1.02117 1.20252 1.01988 1.00898 0.92619 1.25426 1.05311 1.03074 1.01513 1.83924 1.47039 1.27446 1.09778 0.93168 0.92178 0.92031 0.89735 0.91674 0.95453 0.94672 0.92627 0.88305 0.92581 0.89573 0.93203 0.93368 0.93391 0.94809 0.94050 0.89862 0.87429 0.94570 0.83298 0.84564 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.11 1.59 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -11.82 2.46 -175.06 -0.43 -12.25 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 9 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.51 10.02 7.18 -10.99 -0.08 9.94 16 14 O -0.52 -12.23 14.14 5.56 0.08 -12.15 16 15 C 0.04 0.53 3.82 -4.98 -0.02 0.51 16 16 N -0.50 -7.51 4.02 -237.53 -0.95 -8.47 16 17 C 0.05 0.61 5.19 -3.82 -0.02 0.59 16 18 C 0.07 0.81 6.13 37.16 0.23 1.04 16 19 O -0.37 -5.50 10.63 -35.23 -0.37 -5.88 16 20 C 0.03 0.38 11.01 101.05 1.11 1.49 16 21 C 0.13 1.86 4.95 -4.98 -0.02 1.84 16 22 C -0.15 -2.19 5.50 -36.01 -0.20 -2.39 16 23 C -0.11 -1.75 10.05 -41.21 -0.41 -2.17 16 24 C -0.13 -1.72 10.18 -41.21 -0.42 -2.14 16 25 C -0.22 -2.64 11.23 29.04 0.33 -2.31 16 26 S 0.06 0.69 22.21 -107.50 -2.39 -1.70 16 27 H 0.05 0.56 7.22 -51.93 -0.37 0.19 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 33 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.10 1.33 5.86 -51.93 -0.30 1.03 16 36 H 0.06 0.67 7.16 -51.93 -0.37 0.29 16 37 H 0.09 1.06 6.31 -51.93 -0.33 0.73 16 38 H 0.05 0.47 8.00 -51.93 -0.42 0.05 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.56 6.70 -51.93 -0.35 0.21 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.11 1.81 5.86 -51.93 -0.30 1.51 16 45 H 0.04 0.45 7.98 -51.93 -0.41 0.03 16 46 H 0.15 2.69 8.06 -52.49 -0.42 2.27 16 47 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -34.74 399.65 -9.29 -44.03 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.73 Total: 2.28 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 0.39 Total: -1.79 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.61 Total: -47.74 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.30 Total: -18.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.39 Total: -1.70 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.74 -9.29 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353325426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.713 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds