Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47471 * 2 1 4 4 C 1.46507 * 120.00034 * 270.00489 * 3 2 1 5 5 C 1.50702 * 109.46699 * 269.99898 * 4 3 2 6 6 H 1.08002 * 120.00190 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99974 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00089 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99776 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47042 * 90.00158 * 9 7 5 11 11 H 1.48502 * 109.46905 * 209.99788 * 9 7 5 12 12 H 1.48494 * 109.47337 * 329.99688 * 9 7 5 13 13 C 1.34778 * 120.00110 * 89.99867 * 3 2 1 14 14 O 1.21276 * 119.99825 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99764 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47001 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00376 * 190.00477 * 16 15 13 18 18 C 1.52999 * 109.46921 * 76.01149 * 17 16 15 19 19 O 1.42901 * 109.47474 * 63.96280 * 18 17 16 20 20 C 1.42899 * 114.00301 * 184.84479 * 19 18 17 21 21 C 1.46894 * 111.00209 * 66.04738 * 16 15 13 22 22 C 1.50695 * 109.47543 * 200.69891 * 21 16 15 23 23 C 1.33385 * 125.20661 * 84.17588 * 22 21 16 24 24 C 1.38421 * 114.92409 * 179.97438 * 23 22 21 25 25 C 1.33383 * 114.92182 * 359.97438 * 24 23 22 26 26 S 1.75887 * 109.59433 * 359.76125 * 25 24 23 27 27 H 1.09001 * 109.47044 * 300.00011 * 1 2 3 28 28 H 1.08999 * 109.47046 * 60.00335 * 1 2 3 29 29 H 1.09003 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47044 * 239.99989 * 2 1 3 31 31 H 1.09002 * 109.47461 * 119.99966 * 2 1 3 32 32 H 1.08996 * 109.46862 * 29.99371 * 4 3 2 33 33 H 1.08991 * 109.46951 * 149.99516 * 4 3 2 34 34 H 0.96999 * 119.99947 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46986 * 60.00780 * 15 13 3 36 36 H 1.08997 * 109.47582 * 300.00472 * 15 13 3 37 37 H 1.08991 * 109.47267 * 196.01505 * 17 16 15 38 38 H 1.09001 * 109.46846 * 316.01575 * 17 16 15 39 39 H 1.09005 * 109.47064 * 183.96458 * 18 17 16 40 40 H 1.09001 * 109.47511 * 303.96093 * 18 17 16 41 41 H 1.09001 * 109.47134 * 304.86758 * 20 19 18 42 42 H 1.08998 * 109.46964 * 64.86584 * 20 19 18 43 43 H 1.09001 * 109.47150 * 184.86897 * 20 19 18 44 44 H 1.08999 * 109.47001 * 320.69953 * 21 16 15 45 45 H 1.08996 * 109.46981 * 80.69481 * 21 16 15 46 46 H 1.08002 * 122.53880 * 359.95411 * 23 22 21 47 47 H 1.08002 * 122.53771 * 180.02562 * 24 23 22 48 48 H 1.08000 * 125.20792 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1494 2.3904 -2.8775 8 7 5.3917 2.1840 -3.2569 9 14 3.0131 3.4360 -3.9287 10 1 3.1159 4.8561 -3.5068 11 1 3.4068 3.3137 -5.3553 12 1 1.6136 2.9693 -3.7597 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2065 3.5888 17 6 2.3049 1.4821 4.8668 18 6 3.5836 0.6504 4.9856 19 8 4.7162 1.5208 5.0243 20 6 5.9727 0.8402 5.0248 21 6 1.3826 3.3459 3.6266 22 6 2.0041 4.4730 4.4103 23 6 2.8531 5.3759 3.9172 24 6 3.2938 6.3206 4.8279 25 6 2.8022 6.1853 6.0604 26 16 1.7141 4.8044 6.1132 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 5.7177 2.5745 -4.0828 35 1 2.6211 0.4187 2.5302 36 1 0.9432 1.0126 2.5298 37 1 2.2581 2.1960 5.6890 38 1 1.4377 0.8230 4.9080 39 1 3.5485 0.0588 5.9005 40 1 3.6657 -0.0147 4.1259 41 1 6.0004 0.1290 5.8504 42 1 6.0977 0.3075 4.0821 43 1 6.7784 1.5648 5.1423 44 1 1.1767 3.6806 2.6099 45 1 0.4515 3.0413 4.1044 46 1 3.1728 5.3700 2.8856 47 1 3.9828 7.1081 4.5604 48 1 3.0333 6.8281 6.8970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353325426.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -48.540302 kcal Electronic energy + Delta-G solvation = -28568.873342 eV Core-core repulsion = 24750.725994 eV Total energy + Delta-G solvation = -3818.147348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01305 -39.27987 -38.59218 -37.46408 -36.73178 -34.84458 -32.16110 -31.96574 -30.99534 -29.63004 -27.99570 -27.17653 -25.73996 -24.40475 -23.94355 -23.74095 -22.08199 -20.00772 -19.84296 -19.09444 -18.27263 -18.01536 -17.57388 -17.08432 -16.83175 -16.45518 -16.37991 -16.07711 -15.93397 -15.54519 -15.06718 -14.80325 -14.68542 -14.49475 -14.18930 -13.95795 -13.63278 -13.62756 -13.48527 -13.39340 -13.20124 -13.15238 -12.92146 -12.85442 -12.52509 -12.49658 -12.38078 -12.18266 -12.01751 -11.88579 -11.73656 -11.72475 -11.62282 -10.82775 -10.50215 -10.48457 -9.53922 -9.36313 -9.26142 -9.16217 -8.33488 -6.37719 0.13038 0.78282 1.09733 1.30853 1.35542 1.43380 1.86296 1.91250 2.26226 2.30604 2.95900 3.01223 3.06339 3.66742 3.85557 4.02991 4.10763 4.18183 4.19062 4.29096 4.36245 4.37493 4.44330 4.53031 4.55054 4.56412 4.63913 4.66043 4.68273 4.76547 4.80952 4.83268 4.87101 4.91336 4.93769 5.02138 5.02870 5.31802 5.39880 5.48531 5.51793 5.66757 5.69714 5.93671 6.07494 6.26926 6.42660 6.63765 6.79777 7.23594 7.53824 8.83818 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010472 B = 0.003603 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.192400 B = 7769.425716 C = 8368.952073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.230 3.770 5 C -0.532 4.532 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.238 1.238 13 C 0.497 3.503 14 O -0.569 6.569 15 C 0.051 3.949 16 N -0.532 5.532 17 C 0.052 3.948 18 C 0.062 3.938 19 O -0.404 6.404 20 C 0.030 3.970 21 C 0.132 3.868 22 C -0.165 4.165 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.211 4.211 26 S 0.110 5.890 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.015 0.985 34 H 0.267 0.733 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.030 0.970 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.147 0.853 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 -4.084 21.478 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.107 3.893 5 C -0.570 4.570 6 H 0.044 0.956 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.161 1.161 13 C 0.285 3.715 14 O -0.448 6.448 15 C -0.079 4.079 16 N -0.257 5.257 17 C -0.075 4.075 18 C -0.015 4.015 19 O -0.323 6.323 20 C -0.066 4.066 21 C 0.003 3.997 22 C -0.282 4.282 23 C -0.169 4.169 24 C -0.177 4.177 25 C -0.346 4.346 26 S 0.373 5.627 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.127 0.873 47 H 0.164 0.836 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.601 -3.755 22.395 25.969 hybrid contribution 0.907 0.733 -2.230 2.517 sum -11.693 -3.022 20.164 23.505 Atomic orbital electron populations 1.22149 0.93910 1.03601 1.02033 1.21746 0.95617 0.81265 1.03745 1.48067 1.64676 1.15158 1.05705 1.19206 0.94505 0.92868 0.82689 1.21575 0.97158 1.31818 1.06474 0.95581 1.25835 0.96648 0.97196 0.98995 1.70058 1.17444 1.46740 1.24491 0.85734 0.80538 0.78954 0.77814 1.20442 1.19985 1.16081 1.21147 0.77289 0.86865 0.86199 1.90636 1.46238 1.20331 1.87576 1.22025 1.02590 0.95633 0.87641 1.61328 1.52894 1.08582 1.02882 1.22384 0.96621 0.97707 0.90771 1.22722 0.85747 0.92190 1.00797 1.87999 1.14521 1.34488 1.95293 1.22779 0.85750 0.97987 1.00134 1.20492 0.92011 0.88097 0.99135 1.24366 1.04880 1.01621 0.97341 1.20207 0.99184 0.96479 1.01018 1.20303 1.03175 1.01221 0.93030 1.25848 1.04085 1.03060 1.01608 1.83633 1.46042 1.26633 1.06426 0.91954 0.93629 0.88757 0.91227 0.88787 0.93637 0.96677 0.92371 0.86956 0.88762 0.89954 0.89578 0.90327 0.93477 0.92019 0.95090 0.90081 0.90619 0.91818 0.87268 0.83584 0.79282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 71.98 0.74 -2.54 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -24.15 2.46 -826.15 -2.03 -26.17 16 4 C 0.23 11.30 4.23 85.63 0.36 11.66 16 5 C -0.53 -31.86 9.94 25.60 0.25 -31.60 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 7 C 0.01 0.66 5.47 84.65 0.46 1.12 16 8 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 9 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.50 19.93 7.18 87.66 0.63 20.56 16 14 O -0.57 -28.59 14.14 -3.02 -0.04 -28.63 16 15 C 0.05 1.41 3.82 85.56 0.33 1.74 16 16 N -0.53 -15.32 4.02 -905.42 -3.64 -18.95 16 17 C 0.05 1.10 5.19 86.30 0.45 1.54 16 18 C 0.06 1.33 6.13 71.98 0.44 1.77 16 19 O -0.40 -11.82 10.63 -148.98 -1.58 -13.41 16 20 C 0.03 0.70 11.01 113.37 1.25 1.95 16 21 C 0.13 3.80 4.95 85.56 0.42 4.22 16 22 C -0.16 -4.91 5.50 24.59 0.14 -4.78 16 23 C -0.14 -4.68 10.05 21.21 0.21 -4.47 16 24 C -0.15 -4.05 10.18 21.21 0.22 -3.83 16 25 C -0.21 -4.72 11.23 66.72 0.75 -3.97 16 26 S 0.11 2.47 22.21 -56.49 -1.25 1.21 16 27 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 32 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 33 H 0.02 0.81 6.85 -2.39 -0.02 0.79 16 34 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 35 H 0.11 2.77 5.86 -2.39 -0.01 2.76 16 36 H 0.09 1.87 7.16 -2.39 -0.02 1.85 16 37 H 0.08 1.79 6.31 -2.39 -0.02 1.78 16 38 H 0.09 1.19 8.00 -2.39 -0.02 1.17 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.05 1.00 6.70 -2.39 -0.02 0.98 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.66 5.86 -2.39 -0.01 2.65 16 45 H 0.06 1.42 7.98 -2.39 -0.02 1.40 16 46 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 47 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 48 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -82.87 399.65 1.68 -81.19 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.88 Total: 21.57 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 7.16 Total: -3.34 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -5.37 Total: -105.90 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.63 Total: -42.04 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.25 Total: 1.21 kcal Total: -82.87 1.68 -81.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353325426.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.649 kcal (2) G-P(sol) polarization free energy of solvation -82.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds