Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21282 * 120.00495 * 2 1 4 4 N 1.34777 * 119.99645 * 179.97438 * 2 1 3 5 5 C 1.46998 * 120.60011 * 20.89317 * 4 2 1 6 6 C 1.53372 * 108.62328 * 124.97328 * 5 4 2 7 7 N 1.46958 * 108.68768 * 49.45126 * 6 5 4 8 8 C 1.34775 * 120.61069 * 124.72636 * 7 6 5 9 9 O 1.21278 * 120.00583 * 180.02562 * 8 7 6 10 10 C 1.50708 * 119.99701 * 0.02871 * 8 7 6 11 11 S 1.81000 * 109.47273 * 179.97438 * 10 8 7 12 12 C 1.76193 * 99.99835 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00534 * 359.97438 * 12 11 10 14 14 C 1.38803 * 119.99744 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00108 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99938 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46963 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46812 * 120.00087 * 16 14 12 19 19 H 1.48494 * 109.46841 * 239.99934 * 16 14 12 20 20 C 1.46997 * 118.78615 * 304.75591 * 7 6 5 21 21 C 1.46829 * 120.60318 * 200.90854 * 4 2 1 22 22 C 1.52875 * 109.50812 * 115.24016 * 21 4 2 23 23 C 1.53017 * 109.48133 * 299.50769 * 22 21 4 24 24 C 1.52993 * 109.45216 * 300.15567 * 23 22 21 25 25 C 1.52998 * 109.49446 * 60.06431 * 24 23 22 26 26 C 1.52848 * 109.54991 * 354.85898 * 21 4 2 27 27 H 1.09001 * 109.46841 * 264.64677 * 1 2 3 28 28 H 1.09007 * 109.46432 * 24.63579 * 1 2 3 29 29 H 1.08993 * 109.47551 * 144.64265 * 1 2 3 30 30 H 1.08996 * 109.61348 * 5.22723 * 5 4 2 31 31 H 1.08999 * 109.60967 * 244.70595 * 5 4 2 32 32 H 1.09003 * 109.59532 * 289.68929 * 6 5 4 33 33 H 1.09001 * 109.59914 * 169.21913 * 6 5 4 34 34 H 1.08996 * 109.46750 * 299.99708 * 10 8 7 35 35 H 1.09003 * 109.46878 * 59.99480 * 10 8 7 36 36 H 0.97000 * 120.00096 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.61123 * 295.32922 * 20 7 6 38 38 H 1.09003 * 109.75654 * 174.89404 * 20 7 6 39 39 H 1.09007 * 109.46982 * 179.50305 * 22 21 4 40 40 H 1.09003 * 109.46693 * 59.51510 * 22 21 4 41 41 H 1.09000 * 109.47283 * 180.16059 * 23 22 21 42 42 H 1.09004 * 109.47862 * 60.15539 * 23 22 21 43 43 H 1.08995 * 109.47019 * 180.02562 * 24 23 22 44 44 H 1.09008 * 109.46564 * 300.06519 * 24 23 22 45 45 H 1.09002 * 109.47303 * 59.95422 * 25 24 23 46 46 H 1.09004 * 109.47310 * 179.97438 * 25 24 23 47 47 H 1.08999 * 109.46760 * 180.49092 * 26 21 4 48 48 H 1.08995 * 109.46816 * 300.49003 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5312 -2.4065 -0.4502 6 6 2.3842 -3.0304 -1.5616 7 7 3.7805 -3.0888 -1.1070 8 6 4.4525 -4.2570 -1.1026 9 8 5.6044 -4.2927 -0.7247 10 6 3.7726 -5.5192 -1.5673 11 16 4.9275 -6.9073 -1.4439 12 6 3.9007 -8.2128 -2.0317 13 1 2.8837 -8.0069 -2.3313 14 6 4.3985 -9.5062 -2.1087 15 7 5.6375 -9.7575 -1.7422 16 14 3.3095 -10.8906 -2.7313 17 1 1.9698 -10.3501 -3.0752 18 1 3.9237 -11.4985 -3.9390 19 1 3.1694 -11.9237 -1.6738 20 6 4.4306 -1.8497 -0.6566 21 6 3.5770 -1.2242 0.4516 22 6 3.6709 -2.0802 1.7147 23 6 2.8145 -1.4563 2.8188 24 6 3.3189 -0.0432 3.1177 25 6 3.2205 0.8122 1.8530 26 6 4.0767 0.1895 0.7481 27 1 -0.3633 -0.0959 1.0232 28 1 -0.3632 0.9342 -0.4284 29 1 -0.3634 -0.8380 -0.5946 30 1 0.5373 -2.1793 -0.8356 31 1 1.4523 -3.1027 0.3848 32 1 2.3176 -2.4180 -2.4609 33 1 2.0266 -4.0377 -1.7751 34 1 2.9016 -5.7140 -0.9417 35 1 3.4564 -5.4010 -2.6038 36 1 5.9854 -10.6613 -1.7964 37 1 4.5119 -1.1546 -1.4922 38 1 5.4246 -2.0748 -0.2698 39 1 4.7089 -2.1293 2.0440 40 1 3.3101 -3.0860 1.4996 41 1 2.8838 -2.0652 3.7202 42 1 1.7760 -1.4098 2.4907 43 1 2.7094 0.4013 3.9044 44 1 4.3578 -0.0899 3.4446 45 1 2.1819 0.8584 1.5255 46 1 3.5795 1.8190 2.0664 47 1 5.1158 0.1465 1.0744 48 1 4.0040 0.7972 -0.1538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372318002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = -37.627245 kcal Electronic energy + Delta-G solvation = -29292.822401 eV Core-core repulsion = 25475.148279 eV Total energy + Delta-G solvation = -3817.674122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.72423 -40.71688 -38.58045 -37.43133 -35.12317 -34.56527 -33.40070 -31.63426 -30.87361 -30.59356 -28.85744 -27.71047 -26.61634 -24.57422 -23.60419 -22.67500 -21.80146 -20.64452 -19.73056 -19.12721 -18.29003 -17.50453 -17.20731 -17.09820 -16.86397 -16.62523 -16.48629 -15.98697 -15.72184 -15.60450 -14.99443 -14.91352 -14.73016 -14.48353 -14.30520 -13.85988 -13.69451 -13.50677 -13.32183 -13.19306 -13.13774 -13.09721 -12.98986 -12.90668 -12.71502 -12.59508 -12.47216 -12.32101 -11.89118 -11.68729 -11.26829 -11.24428 -11.14527 -10.87553 -10.84264 -10.24283 -10.20859 -10.00428 -9.14229 -8.65512 -8.33038 -6.11085 1.24928 1.43103 1.45921 1.51443 1.57573 1.62041 1.86450 2.18474 2.28627 3.01689 3.24031 3.42961 3.60460 3.67194 3.78720 3.85767 3.99822 4.12518 4.15116 4.17315 4.24167 4.31397 4.37540 4.44656 4.47346 4.51696 4.56015 4.58935 4.64170 4.67132 4.68885 4.76633 4.81291 4.92024 5.02334 5.13114 5.18792 5.20378 5.23625 5.35230 5.37721 5.43881 5.44280 5.59498 5.67761 6.20954 6.23005 6.53374 7.08612 7.11077 7.16636 8.76314 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.002814 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.136029 B = 9946.429542 C =10406.758716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.496 3.504 3 O -0.538 6.538 4 N -0.605 5.605 5 C 0.093 3.907 6 C 0.084 3.916 7 N -0.604 5.604 8 C 0.535 3.465 9 O -0.565 6.565 10 C -0.121 4.121 11 S -0.156 6.156 12 C -0.541 4.541 13 H 0.086 0.914 14 C 0.012 3.988 15 N -0.913 5.913 16 Si 0.998 3.002 17 H -0.253 1.253 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.110 3.890 21 C 0.176 3.824 22 C -0.116 4.116 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.139 4.139 26 C -0.097 4.097 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.270 0.730 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.114 0.886 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.736 20.703 4.545 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.289 3.711 3 O -0.418 6.418 4 N -0.339 5.339 5 C -0.029 4.029 6 C -0.039 4.039 7 N -0.338 5.338 8 C 0.323 3.677 9 O -0.443 6.443 10 C -0.272 4.272 11 S 0.071 5.929 12 C -0.689 4.689 13 H 0.104 0.896 14 C -0.192 4.192 15 N -0.550 5.550 16 Si 0.820 3.180 17 H -0.176 1.176 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.013 4.013 21 C 0.090 3.910 22 C -0.155 4.155 23 C -0.143 4.143 24 C -0.162 4.162 25 C -0.176 4.176 26 C -0.135 4.135 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.615 21.096 5.108 26.168 hybrid contribution -0.754 -1.053 -0.666 1.456 sum -15.369 20.043 4.442 25.645 Atomic orbital electron populations 1.22106 0.88870 1.06204 1.06031 1.21150 0.91763 0.82235 0.75928 1.90697 1.70910 1.33483 1.46738 1.47935 1.11803 1.08755 1.65432 1.22413 0.97690 0.85522 0.97298 1.22503 0.79114 1.04292 0.98003 1.47960 1.14358 1.06362 1.65127 1.20210 0.85914 0.84724 0.76888 1.90686 1.19190 1.86006 1.48420 1.23357 1.03274 0.95091 1.05526 1.85695 1.20681 1.00211 1.86275 1.23227 1.00981 0.94611 1.50080 0.89570 1.26134 0.96896 1.01211 0.95003 1.70197 1.16495 1.22018 1.46243 0.84908 0.78413 0.76906 0.77740 1.17610 1.20243 1.20125 1.21964 0.97090 0.84993 0.97288 1.20646 0.81684 0.96278 0.92356 1.21731 1.00501 0.98441 0.94824 1.21403 0.99412 0.95984 0.97523 1.21675 1.00720 0.95572 0.98235 1.22687 1.04533 0.97344 0.92986 1.21704 0.98165 0.93020 1.00624 0.87577 0.88883 0.87304 0.84189 0.90341 0.89237 0.86962 0.86824 0.87244 0.92103 0.90825 0.90472 0.92500 0.92591 0.91887 0.91216 0.91436 0.93290 0.86905 0.93523 0.93266 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.92 71.24 0.71 -0.40 16 2 C 0.50 7.49 5.74 87.66 0.50 7.99 16 3 O -0.54 -11.80 10.88 -3.04 -0.03 -11.84 16 4 N -0.61 -9.34 1.93 -772.21 -1.49 -10.83 16 5 C 0.09 1.01 5.98 86.41 0.52 1.53 16 6 C 0.08 1.31 6.50 86.42 0.56 1.87 16 7 N -0.60 -15.54 2.60 -818.20 -2.13 -17.67 16 8 C 0.53 19.39 7.72 87.66 0.68 20.07 16 9 O -0.56 -26.15 15.27 -3.02 -0.05 -26.19 16 10 C -0.12 -4.55 4.50 71.24 0.32 -4.23 16 11 S -0.16 -8.46 20.57 -56.49 -1.16 -9.62 16 12 C -0.54 -29.89 9.50 67.96 0.65 -29.25 16 13 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 14 C 0.01 0.67 5.49 84.86 0.47 1.14 16 15 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 16 Si 1.00 42.44 29.55 68.60 2.03 44.46 16 17 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 20 C 0.11 2.81 5.27 86.36 0.46 3.26 16 21 C 0.18 3.70 0.66 3.53 0.00 3.71 16 22 C -0.12 -2.60 4.53 30.56 0.14 -2.47 16 23 C -0.11 -1.92 5.77 30.60 0.18 -1.74 16 24 C -0.12 -2.29 5.92 30.59 0.18 -2.11 16 25 C -0.14 -2.85 4.65 30.60 0.14 -2.71 16 26 C -0.10 -2.16 4.17 30.55 0.13 -2.03 16 27 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.11 0.14 5.78 -2.39 -0.01 0.12 16 30 H 0.14 0.39 5.57 -2.39 -0.01 0.38 16 31 H 0.08 0.91 7.38 -2.39 -0.02 0.89 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.59 5.92 -2.39 -0.01 1.57 16 34 H 0.11 3.69 7.72 -2.40 -0.02 3.67 16 35 H 0.11 3.66 7.91 -2.39 -0.02 3.64 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.07 1.79 8.11 -2.39 -0.02 1.77 16 38 H 0.08 2.38 6.98 -2.39 -0.02 2.36 16 39 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.06 1.38 7.00 -2.39 -0.02 1.37 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.11 7.55 -2.38 -0.02 1.09 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.11 2.32 3.67 -95.28 -0.35 1.97 16 46 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.89 6.46 -2.39 -0.02 1.87 16 Total: -1.00 -78.25 371.12 3.69 -74.55 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.62 Total: 17.66 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 5.62 Total: -5.37 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.33 Total: -83.65 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.08 Total: -38.03 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -78.25 3.69 -74.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372318002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.927 kcal (2) G-P(sol) polarization free energy of solvation -78.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds